GeneChip profiling of transcriptional responses to soybean cyst nematode, Heterodera glycines, colonization of soybean roots.

Abstract:

:Soybean cyst nematode (SCN) is currently the most devastating pathogen of soybean. SCN penetrates the root and migrates toward the central vascular bundle where it establishes a complex multinucleated feeding structure that provides plant-derived nutrients to support the development and growth of the nematode. To identify host genes that play significant roles in SCN development in susceptible roots, RNA from SCN-inoculated and non-inoculated root pieces were hybridized to the Affymetrix soybean genome GeneChips. RNA was collected at 8, 12, and 16 d post-inoculation from root pieces that displayed multiple swollen female SCN and similar root pieces from non-inoculated roots. Branch roots and root tips were trimmed from the root pieces to minimize the amount of RNA contributed by these organs. Of the 35 593 transcripts represented on the GeneChip, approximately 26,500 were expressed in the SCN-colonized root pieces. ANOVA followed by False Discovery Rate analysis indicated that the expression levels of 4616 transcripts changed significantly (Q-value < or =0.05) in response to SCN. In this set of 4616 transcripts, 1404 transcripts increased >2-fold and 739 decreased >2-fold. Of the transcripts to which a function could be assigned, a large proportion was associated with cell wall structure. Other functional categories that included a large number of up-regulated transcripts were defence, metabolism, and histones, and a smaller group of transcripts associated with signal transduction and transcription.

journal_name

J Exp Bot

authors

Puthoff DP,Ehrenfried ML,Vinyard BT,Tucker ML

doi

10.1093/jxb/erm211

subject

Has Abstract

pub_date

2007-01-01 00:00:00

pages

3407-18

issue

12

eissn

0022-0957

issn

1460-2431

pii

58/12/3407

journal_volume

58

pub_type

杂志文章
  • PhOBF1, a petunia ocs element binding factor, plays an important role in antiviral RNA silencing.

    abstract::Virus-induced gene silencing (VIGS) is a common reverse genetics strategy for characterizing the function of genes in plants. The detailed mechanism governing RNA silencing efficiency triggered by viruses is largely unclear. Here, we reveal that a petunia (Petunia hybrida) ocs element binding factor, PhOBF1, one of th...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw490

    authors: Sun D,Li S,Niu L,Reid MS,Zhang Y,Jiang CZ

    更新日期:2017-02-01 00:00:00

  • The inverse relationship between solar-induced fluorescence yield and photosynthetic capacity: benefits for field phenotyping.

    abstract::Improving photosynthesis is considered a promising way to increase crop yield to feed a growing population. Realizing this goal requires non-destructive techniques to quantify photosynthetic variation among crop cultivars. Despite existing remote sensing-based approaches, it remains a question whether solar-induced fl...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eraa537

    authors: Fu P,Meacham-Hensold K,Siebers MH,Bernacchi CJ

    更新日期:2020-12-19 00:00:00

  • Is C4 photosynthesis less phenotypically plastic than C3 photosynthesis?

    abstract::C4 photosynthesis is a complex specialization that enhances carbon gain in hot, often arid habitats where photorespiration rates can be high. Certain features unique to C4 photosynthesis may reduce the potential for phenotypic plasticity and photosynthetic acclimation to environmental change relative to what is possib...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erj040

    authors: Sage RF,McKown AD

    更新日期:2006-01-01 00:00:00

  • Citrus CitNAC62 cooperates with CitWRKY1 to participate in citric acid degradation via up-regulation of CitAco3.

    abstract::Citric acid is the predominant organic acid of citrus fruit. Degradation of citric acid occurs during fruit development, influencing fruit acidity. Associations of CitAco3 transcripts and citric acid degradation have been reported for citrus fruit. Here, transient overexpression of CitAco3 significantly reduced the ci...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erx187

    authors: Li SJ,Yin XR,Wang WL,Liu XF,Zhang B,Chen KS

    更新日期:2017-06-15 00:00:00

  • Estimating chlorophyll content and photochemical yield of photosystem II (ΦPSII) using solar-induced chlorophyll fluorescence measurements at different growing stages of attached leaves.

    abstract::This paper illustrates the possibility of measuring chlorophyll (Chl) content and Chl fluorescence parameters by the solar-induced Chl fluorescence (SIF) method using the Fraunhofer line depth (FLD) principle, and compares the results with the standard measurement methods. A high-spectral resolution HR2000+ and an ord...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erv272

    authors: Tubuxin B,Rahimzadeh-Bajgiran P,Ginnan Y,Hosoi F,Omasa K

    更新日期:2015-09-01 00:00:00

  • Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references.

    abstract::Quantitative RT-PCR (reverse transcription polymerase chain reaction, also known as qRT-PCR or real-time RT-PCR) has been used in large proportions of transcriptome analyses published to date. The accuracy of the results obtained by this method strongly depends on accurate transcript normalization using stably express...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/ern305

    authors: Guénin S,Mauriat M,Pelloux J,Van Wuytswinkel O,Bellini C,Gutierrez L

    更新日期:2009-01-01 00:00:00

  • A role for brassinosteroids in the regulation of photosynthesis in Cucumis sativus.

    abstract::The effects of 24-epibrassinolide (EBR) spray application on gas-exchange, chlorophyll fluorescence characteristics, Rubisco activity, and carbohydrate metabolism were investigated in cucumber (Cucumis sativus L. cv. Jinchun No. 3) plants grown in a greenhouse. EBR significantly increased the light-saturated net CO(2)...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erh124

    authors: Yu JQ,Huang LF,Hu WH,Zhou YH,Mao WH,Ye SF,Nogués S

    更新日期:2004-05-01 00:00:00

  • Water stress can induce quiescence in newly-germinated onion (Allium cepa L.) seedlings.

    abstract::The effect of water stress on the early seedling growth of onions was studied by placing newly-germinated seedlings in vermiculite equilibrated at different water potentials. Roots and shoots elongated more at -0.29 than at -0.64 MPa, but did not elongate at -1.66 MPa. However, roots and shoots of seedlings that had b...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jexbot/52.358.1129

    authors: Whalley WR,Lipiec J,Finch-Savage WE,Cope RE,Clark LJ,Rowse HR

    更新日期:2001-05-01 00:00:00

  • Exogenous ascorbic acid (vitamin C) increases resistance to salt stress and reduces lipid peroxidation.

    abstract::The transition from reversible to permanent wilting, in whole tomato seedlings (Lycopersicon esculentum Mill. cv. M82) following severe salt-stress by root exposure to 300 mM NaCl, was investigated. Salinized seedlings wilted rapidly but recovered if returned to non-saline nutrient solution within 6 h. However, after ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jexbot/52.364.2207

    authors: Shalata A,Neumann PM

    更新日期:2001-11-01 00:00:00

  • Low responsiveness of grapevine flowers and berries at fruit set to UV-C irradiation.

    abstract::In grapevine, stimulation of defence responses was evidenced in response to various types of abiotic stresses in both leaves and berries, as revealed by the increasing expression of genes encoding defence-related proteins or the stimulation of their corresponding activities. However, the capability of inflorescences t...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ern361

    authors: Petit AN,Baillieul F,Vaillant-Gaveau N,Jacquens L,Conreux A,Jeandet P,Clément C,Fontaine F

    更新日期:2009-01-01 00:00:00

  • A root- and hypocotyl-specific gene coding for copper-containing amine oxidase is related to cell expansion in soybean seedlings.

    abstract::Polyamines are considered to participate in various processes of plant development. In this study, the possible implication of putrescine catabolism by the copper-containing amine oxidases (CuAOs, EC 1.4.3.6) in the development of roots and hypocotyls was examined. For this purpose, two cDNA clones of Glycine max (L.)...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erj009

    authors: Delis C,Dimou M,Flemetakis E,Aivalakis G,Katinakis P

    更新日期:2006-01-01 00:00:00

  • PbrMYB169 positively regulates lignification of stone cells in pear fruit.

    abstract::Stone cells negatively affect fruit quality because of their firm and lignified cell walls, so are targets for reduction in pear breeding programmes. However, there is only limited knowledge of the molecular mechanisms underlying the formation of stone cells. Here, we show that PbrMYB169, an R2R3 MYB transcription fac...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erz039

    authors: Xue C,Yao JL,Xue YS,Su GQ,Wang L,Lin LK,Allan AC,Zhang SL,Wu J

    更新日期:2019-03-27 00:00:00

  • Arabidopsis RETINOBLASTOMA-RELATED and Polycomb group proteins: cooperation during plant cell differentiation and development.

    abstract::RETINOBLASTOMA (RB) is a tumour suppressor gene originally discovered in patients that develop eye tumours. The pRb protein is now well established as a key cell-cycle regulator which suppresses G1-S transition via interaction with E2F-DP complexes. pRb function is also required for a wide range of biological processe...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/eru069

    authors: Kuwabara A,Gruissem W

    更新日期:2014-06-01 00:00:00

  • Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance.

    abstract::Plants show varied cellular responses to salinity that are partly associated with maintaining low cytosolic Na(+) levels and a high K(+)/Na(+) ratio. Plant metabolites change with elevated Na(+), some changes are likely to help restore osmotic balance while others protect Na(+)-sensitive proteins. Metabolic responses ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erp243

    authors: Widodo,Patterson JH,Newbigin E,Tester M,Bacic A,Roessner U

    更新日期:2009-01-01 00:00:00

  • Proteomic analysis of Mn-induced resistance to powdery mildew in grapevine.

    abstract::Previous studies documented that metal hyperaccumulation armours plants with direct defences against pathogens. In the present study, it was found that high leaf Mn concentrations (<2500 µg g(-1)) induced grapevine resistance to powdery mildew [Uncinula necator (Schw.) Burr]. Manganese delayed pathogen spreading after...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers175

    authors: Yao YA,Wang J,Ma X,Lutts S,Sun C,Ma J,Yang Y,Achal V,Xu G

    更新日期:2012-09-01 00:00:00

  • Long-term in vitro culture of grape berries and its application to assess the effects of sugar supply on anthocyanin accumulation.

    abstract::Grape berry development and ripening are under complex regulation by the nutrients, hormones, and environment cues sensed by the berry. However, the biochemical and molecular mechanisms underlying these types of regulation are poorly understood. A simplified but realistic model system that enables fruit growth conditi...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ert489

    authors: Dai ZW,Meddar M,Renaud C,Merlin I,Hilbert G,Delrot S,Gomès E

    更新日期:2014-08-01 00:00:00

  • High water availability increases the negative impact of a native hemiparasite on its non-native host.

    abstract::Environmental factors alter the impacts of parasitic plants on their hosts. However, there have been no controlled studies on how water availability modulates stem hemiparasites' effects on hosts. A glasshouse experiment was conducted to investigate the association between the Australian native stem hemiparasite Cassy...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erv548

    authors: Cirocco RM,Facelli JM,Watling JR

    更新日期:2016-03-01 00:00:00

  • Subcellular localization and interactions among rubber particle proteins from Hevea brasiliensis.

    abstract::Natural rubber (polyisoprene) from the rubber tree Hevea brasiliensis is synthesized by specialized cells called laticifers. It is not clear how rubber particles arise, although one hypothesis is that they derive from the endoplasmic reticulum (ER) membrane. Here we cloned the genes encoding four key proteins found in...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erx331

    authors: Brown D,Feeney M,Ahmadi M,Lonoce C,Sajari R,Di Cola A,Frigerio L

    更新日期:2017-11-02 00:00:00

  • Drying times: plant traits to improve crop water use efficiency and yield.

    abstract::Crop water use efficiency (WUE) has come into sharp focus as population growth and climate change place increasing strain on the water used in cropping. Rainfed crops are being challenged by an upward trend in evaporative demand as average temperatures rise and, in many regions, there is an increased irregularity and ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eraa002

    authors: Condon AG

    更新日期:2020-04-06 00:00:00

  • To grow or not to grow: what can we learn on ethylene-gibberellin cross-talk by in silico gene expression analysis?

    abstract::Ethylene and gibberellins (GAs) are known to influence plant growth by mutual cross-talk and by interaction with other hormones. Transcript meta-analysis shows that GA and ethylene metabolism genes are expressed in the majority of plant organs. Both GAs and the ethylene precursor 1-amino-cyclopropane-1-carboxylic acid...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erm349

    authors: Dugardeyn J,Vandenbussche F,Van Der Straeten D

    更新日期:2008-01-01 00:00:00

  • On the move: induced resistance in monocots.

    abstract::Although plants possess an arsenal of constitutive defences such as structural barriers and preformed antimicrobial defences, many attackers are able to overcome the pre-existing defence layers. In response, a range of inducible plant defences is set up to battle these pathogens. These mechanisms, commonly integrated ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/ers248

    authors: Balmer D,Planchamp C,Mauch-Mani B

    更新日期:2013-03-01 00:00:00

  • Intron-regulated expression of SUVH3, an Arabidopsis Su(var)3-9 homologue.

    abstract::SU(VAR)3-9 proteins are key regulators of heterochromatin structure and function in plants, mammals, Drosophila, and yeast. In contrast to animals and fungi, plants contain numerous Su(var)3-9 homologues (SUVH), the members of which form a discrete subfamily. The SU(VAR)3-9 and SUVH proteins associate with heterochrom...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erl093

    authors: Casas-Mollano JA,Lao NT,Kavanagh TA

    更新日期:2006-01-01 00:00:00

  • The Medicago truncatula Yellow Stripe1-Like3 gene is involved in vascular delivery of transition metals to root nodules.

    abstract::Symbiotic nitrogen fixation carried out in legume root nodules requires transition metals. These nutrients are delivered by the host plant to the endosymbiotic nitrogen-fixing bacteria living within the nodule cells, a process in which vascular transport is essential. As members of the Yellow Stripe-Like (YSL) family ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eraa390

    authors: Castro-Rodríguez R,Abreu I,Reguera M,Novoa-Aponte L,Mijovilovich A,Escudero V,Jiménez-Pastor FJ,Abadía J,Wen J,Mysore KS,Álvarez-Fernández A,Küpper H,Imperial J,González-Guerrero M

    更新日期:2020-12-31 00:00:00

  • Regulation of the calcium-sensing receptor in both stomatal movement and photosynthetic electron transport is crucial for water use efficiency and drought tolerance in Arabidopsis.

    abstract::Production per amount of water used (water use efficiency, WUE) is closely correlated with drought tolerance. Although stomatal aperture can regulate WUE, the underlying molecular mechanisms are still unclear. Previous reports revealed that stomatal closure was inhibited in the calcium-sensing receptor (CAS) antisense...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ert362

    authors: Wang WH,Chen J,Liu TW,Chen J,Han AD,Simon M,Dong XJ,He JX,Zheng HL

    更新日期:2014-01-01 00:00:00

  • Cloning and characterization of a phospholipase C from the C(4) plant Digitaria sanguinalis.

    abstract::As a PLC activity was implicated in the light transduction pathway that controls C(4) photosynthesis in Digitaria sanguinalis, a full length PLC cDNA (DsPLC2) was cloned. The proteins encoded by the two possible open reading frames were produced in Escherichia coli; they both harbour a PLC activity but with different ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:

    authors: Coursol S,Pierre JN,Vidal J,Grisvard J

    更新日期:2002-06-01 00:00:00

  • The FBH family of bHLH transcription factors controls ACC synthase expression in sugarcane.

    abstract::Ethylene is a phytohormone involved in the regulation of several aspects of plant development and in responses to biotic and abiotic stress. The effects of exogenous application of ethylene to sugarcane plants are well characterized as growth inhibition of immature internodes and stimulation of sucrose accumulation. H...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ery083

    authors: Alessio VM,Cavaçana N,Dantas LLB,Lee N,Hotta CT,Imaizumi T,Menossi M

    更新日期:2018-04-27 00:00:00

  • Shifts in stomatal traits following the domestication of plant species.

    abstract::Stomata are the major gates regulating substrate availability for photosynthesis and water loss. Although both processes are critical to yield and to resource-use efficiency, we lack a comprehensive picture on how domestication and further breeding have impacted on leaf stomata. To fill this gap, stomatal sizes and de...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ert147

    authors: Milla R,de Diego-Vico N,Martín-Robles N

    更新日期:2013-08-01 00:00:00

  • Starch bioengineering affects cereal grain germination and seedling establishment.

    abstract::Cereal grain germination is central for plant early development, and efficient germination has a major role in crop propagation and malting. Endosperm starch is the prime energy reserve in germination and seedling establishment. In this study, it was hypothesized that optimized starch granule structure, and not only t...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eru107

    authors: Shaik SS,Carciofi M,Martens HJ,Hebelstrup KH,Blennow A

    更新日期:2014-06-01 00:00:00

  • Non-coding RNA may be associated with cytoplasmic male sterility in Silene vulgaris.

    abstract::Cytoplasmic male sterility (CMS) is a widespread phenomenon in flowering plants caused by mitochondrial (mt) genes. CMS genes typically encode novel proteins that interfere with mt functions and can be silenced by nuclear fertility-restorer genes. Although the molecular basis of CMS is well established in a number of ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erx057

    authors: Stone JD,Koloušková P,Sloan DB,Štorchová H

    更新日期:2017-03-01 00:00:00

  • Multifaceted roles of nitric oxide in tomato fruit ripening: NO-induced metabolic rewiring and consequences for fruit quality traits.

    abstract::Nitric oxide (NO) has been increasingly implicated as part of the ripening regulatory networks in fleshy fruits. However, very little is known about the simultaneous action of NO on the intertwined web of regulatory events and metabolic reactions behind the ripening-related changes in fruit color, taste, aroma and nut...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eraa526

    authors: Zuccarelli R,Rodríguez-Ruiz M,Lopes-Oliveira PJ,Pascoal GB,Andrade SCS,Furlan CM,Purgatto E,Palma JM,Corpas FJ,Rossi M,Freschi L

    更新日期:2020-11-09 00:00:00