Molecular assays for detecting Aphanomyces invadans in ulcerative mycotic fish lesions.

Abstract:

:The pathogenic oomycete Aphanomyces invadans is the primary etiological agent in ulcerative mycosis, an ulcerative skin disease caused by a fungus-like agent of wild and cultured fish. We developed sensitive PCR and fluorescent peptide nucleic acid in situ hybridization (FISH) assays to detect A. invadans. Laboratory-challenged killifish (Fundulus heteroclitus) were first tested to optimize and validate the assays. Skin ulcers of Atlantic menhaden (Brevoortia tyrannus) from populations found in the Pamlico and Neuse River estuaries in North Carolina were then surveyed. Results from both assays indicated that all of the lesioned menhaden (n = 50) collected in September 2004 were positive for A. invadans. Neither the FISH assay nor the PCR assay cross-reacted with other closely related oomycetes. These results provided strong evidence that A. invadans is the primary oomycete pathogen in ulcerative mycosis and demonstrated the utility of the assays. The FISH assay is the first molecular assay to provide unambiguous visual confirmation that hyphae in the ulcerated lesions were exclusively A. invadans.

journal_name

Appl Environ Microbiol

authors

Vandersea MW,Litaker RW,Yonnish B,Sosa E,Landsberg JH,Pullinger C,Moon-Butzin P,Green J,Morris JA,Kator H,Noga EJ,Tester PA

doi

10.1128/AEM.72.2.1551-1557.2006

keywords:

subject

Has Abstract

pub_date

2006-02-01 00:00:00

pages

1551-7

issue

2

eissn

0099-2240

issn

1098-5336

pii

72/2/1551

journal_volume

72

pub_type

杂志文章
  • Cloning and nucleotide sequence of a gene from Lactobacillus sake Lb706 necessary for sakacin A production and immunity.

    abstract::Sakacin A is an antilisterial bacteriocin produced by Lactobacillus sake Lb706. In order to identify genes involved in sakacin A production and immunity, the plasmid fraction of L. sake Lb706 was shotgun cloned directly into a sakacin A-nonproducing and -sensitive variant, L. sake Lb706-B, by using the broad-host-rang...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.59.9.2868-2875.1993

    authors: Axelsson L,Holck A,Birkeland SE,Aukrust T,Blom H

    更新日期:1993-09-01 00:00:00

  • Molecular analysis of a Saccharomyces cerevisiae mutant with improved ability to utilize xylose shows enhanced expression of proteins involved in transport, initial xylose metabolism, and the pentose phosphate pathway.

    abstract::Differences between the recombinant xylose-utilizing Saccharomyces cerevisiae strain TMB 3399 and the mutant strain TMB 3400, derived from TMB 3399 and displaying improved ability to utilize xylose, were investigated by using genome-wide expression analysis, physiological characterization, and biochemical assays. Samp...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/aem.69.2.740-746.2003

    authors: Wahlbom CF,Cordero Otero RR,van Zyl WH,Hahn-Hägerdal B,Jönsson LJ

    更新日期:2003-02-01 00:00:00

  • SOD1, a new Kluyveromyces lactis helper gene for heterologous protein secretion.

    abstract::Bottlenecks in protein expression and secretion often limit the development of industrial processes. By manipulating chaperone and foldase levels, improvements in yeast secretion were found for a number of proteins. Recently, sustained endoplasmic reticulum stress, occurring due to recombinant protein production, was ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.00955-08

    authors: Raimondi S,Zanni E,Talora C,Rossi M,Palleschi C,Uccelletti D

    更新日期:2008-12-01 00:00:00

  • Spoilage association of chicken skin.

    abstract::The bacterial succession on the skin of broiler chicken carcasses stored at 2 degrees C was traced, and the ability of representative isolates to produce off-odors was determined by using sterile leg and breast muscle sections. Off-odors were identified by olfactory and chemical means. The inability of peptone-iron ag...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.37.3.399-401.1979

    authors: Daud HB,McMeekin TA,Thomas CJ

    更新日期:1979-03-01 00:00:00

  • Fiber-optic fluorometer for microscale mapping of photosynthetic pigments in microbial communities.

    abstract::Microscale fluorescence measurements were performed in photosynthetic biofilms at a spatial resolution of 100 to 200 microm with a new fiber-optic fluorometer which allowed four different excitation and emission wavelengths and was configured for measuring phycobiliproteins, chlorophylls, and bacteriochlorophylls. We ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.67.6.2823-2828.2001

    authors: Thar R,Kühl M,Holst G

    更新日期:2001-06-01 00:00:00

  • Casein Kinase I Isoform Hrr25 Is a Negative Regulator of Haa1 in the Weak Acid Stress Response Pathway in Saccharomyces cerevisiae.

    abstract::Haa1 is a transcription factor that adapts Saccharomyces cerevisiae cells to weak organic acid stresses by activating the expression of various genes. Many of these genes encode membrane proteins, such as TPO2 and YRO2 How Haa1 is activated by weak acids is not clear. Here, we show that casein kinase I isoform Hrr25 i...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.00672-17

    authors: Collins ME,Black JJ,Liu Z

    更新日期:2017-06-16 00:00:00

  • Modeling of pathogen survival during simulated gastric digestion.

    abstract::The objective of the present study was to develop a mathematical model of pathogenic bacterial inactivation kinetics in a gastric environment in order to further understand a part of the infectious dose-response mechanism. The major bacterial pathogens Listeria monocytogenes, Escherichia coli O157:H7, and Salmonella s...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.02139-10

    authors: Koseki S,Mizuno Y,Sotome I

    更新日期:2011-02-01 00:00:00

  • Degradation of the Isoflavone Biochanin A and Its Glucoside Conjugates by Ascochyta rabiei.

    abstract::Strains of Ascochyta rabiei which are pathogenic to chickpea (Cicer arietinum L.) readily catabolized the main chickpea isoflavone biochanin A (5,7-dihydroxy-4'-methoxyisoflavone). 3'-Hydroxylation and O-demethylation reactions led to the isoflavones pratensein, genistein, and orobol, which were rapidly further degrad...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.50.1.45-48.1985

    authors: Kraft B,Barz W

    更新日期:1985-07-01 00:00:00

  • Morphological and molecular identification of Trichoderma isolates on North American mushroom farms.

    abstract::Green mold disease (causal agent, Trichoderma) has resulted in severe crop losses on mushroom farms worldwide in recent years. We analyzed 160 isolates of Trichoderma from mushroom farms for morphological, cultural, and molecular characteristics and classified these isolates into phenotypic groups. The most common gro...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.64.1.133-137.1998

    authors: Castle A,Speranzini D,Rghei N,Alm G,Rinker D,Bissett J

    更新日期:1998-01-01 00:00:00

  • Shuttle vector expression in Thermococcus kodakaraensis: contributions of cis elements to protein synthesis in a hyperthermophilic archaeon.

    abstract::Shuttle vectors that replicate stably and express selectable phenotypes in both Thermococcus kodakaraensis and Escherichia coli have been constructed. Plasmid pTN1 from Thermococcus nautilis was ligated to the commercial vector pCR2.1-TOPO, and selectable markers were added so that T. kodakaraensis transformants could...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.00305-08

    authors: Santangelo TJ,Cubonová L,Reeve JN

    更新日期:2008-05-01 00:00:00

  • Recovery of a strain of Clostridium botulinum producing both neurotoxin A and neurotoxin B from canned macrobiotic food.

    abstract::A rare strain of Clostridium botulinum subtype Ab was isolated from a canned macrobiotic food suspected of being linked to a fatal case of food-borne botulism. The strain was recovered and identified by conventional methods modified by the inclusion of a PCR assay (G. Franciosa, J.L. Ferreira, and C.L. Hatheway, J. Cl...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.63.3.1148-1150.1997

    authors: Franciosa G,Fenicia L,Pourshaban M,Aureli P

    更新日期:1997-03-01 00:00:00

  • Identification of the gene encoding the major cellobiohydrolase of the white rot fungus Phanerochaete chrysosporium.

    abstract::Previous studies have shown that the cellobiohydrolases of the white rot basidiomycete Phanerochaete chrysosporium are encoded by a family of structurally related genes. In this investigation, we identified and sequenced the most highly transcribed gene, cbh1-4. Evidence suggests that in this fungus the dominant isozy...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.59.10.3492-3494.1993

    authors: Vanden Wymelenberg A,Covert S,Cullen D

    更新日期:1993-10-01 00:00:00

  • Immunolatex localization by scanning electron microscopy of intestinal bacteria from cockroaches.

    abstract::An immunolatex reagent was developed from antiserum to Fusobacterium varium, an obligate anaerobe isolated from the colon of the cockroach, Periplaneta americana L. A new technique that enabled the preparation of a highly efficient immunolatex conjugate was used to localize the bacterium with scanning electron microsc...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.35.1.166-171.1978

    authors: Bracke JW,Markovetz AJ

    更新日期:1978-01-01 00:00:00

  • Effects of organic substrates on dechlorination of aroclor 1242 in anaerobic sediments.

    abstract::The effects of different organic substrates on the abilities of anaerobic sediment enrichments to reductively dechlorinate polychlorinated biphenyls (PCBs) were studied. Sediments collected from a site previously contaminated with PCBs were dosed with additional PCBs (Aroclor 1242; approximately 300 ppm [300 mug/g], s...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.56.9.2612-2617.1990

    authors: Nies L,Vogel TM

    更新日期:1990-09-01 00:00:00

  • Effect of UV light disinfection on antibiotic-resistant coliforms in wastewater effluents.

    abstract::Total coliforms and total coliforms resistant to streptomycin, tetracycline, or chloramphenicol were isolated from filtered activated sludge effluents before and after UV light irradiation. Although the UV irradiation effectively disinfected the wastewater effluent, the percentage of the total surviving coliform popul...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.43.2.371-377.1982

    authors: Meckes MC

    更新日期:1982-02-01 00:00:00

  • Electrophoretic Karyotypes of Sclerotinia sclerotiorum.

    abstract::Electrophoretic karyotypes (EKs) of 83 isolates were variable within agricultural and natural populations of Sclerotinia sclerotiorum, as well as among S. sclerotiorum, Sclerotinia minor, and Sclerotinia trifoliorum. Variation in EKs was not observed within six mitotic or three meiotic lineages of isolates. EKs of 8 t...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.62.11.4247-4251.1996

    authors: Errampalli D,Kohn LM

    更新日期:1996-11-01 00:00:00

  • Metabolism of aflatoxin B1 by rat hepatic microsomes induced by polyhalogenated biphenyl congeners.

    abstract::The metabolism of aflatoxin B1 to aflatoxins M1 and Q1 by rat liver microsomes from animals pretreated with polychlorinated or polybrominated biphenyl congeners depended on the structure of the halogenated biphenyl inducers. Microsomes from rats treated with phenobarbital (PB) or halogenated biphenyls that exhibit PB-...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.49.4.882-886.1985

    authors: Halvorson MR,Phillips TD,Safe SH,Robertson LW

    更新日期:1985-04-01 00:00:00

  • Population dynamics within a microbial consortium during growth on diesel fuel in saline environments.

    abstract::The diversity and dynamics of a bacterial community extracted from an exploited oil field with high natural soil salinity near Comodoro Rivadavia in Patagonia (Argentina) were investigated. Community shifts during long-term incubation with diesel fuel at four salinities between 0 and 20% NaCl were monitored by single-...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.72.5.3531-3542.2006

    authors: Kleinsteuber S,Riis V,Fetzer I,Harms H,Müller S

    更新日期:2006-05-01 00:00:00

  • Bacterial fermentation of cheese whey for production of a ruminant feed supplement rich in curde protein.

    abstract::A simple and efficient process for the production of a ruminant feed supplement, rich in crude protein (defined as total N X 6.25), by bacterial fermentation of cheese whey has been developed. The lactose in unpasteurized whey is fermented to lactate acid by Lactobacillus bulgaricus at a temperature of 43 degrees C an...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.32.6.769-776.1976

    authors: Reddy CA,Henderson HE,Erdman MD

    更新日期:1976-12-01 00:00:00

  • Transcriptomic insights into the physiology of Aspergillus niger approaching a specific growth rate of zero.

    abstract::The physiology of filamentous fungi at growth rates approaching zero has been subject to limited study and exploitation. With the aim of uncoupling product formation from growth, we have revisited and improved the retentostat cultivation method for Aspergillus niger. A new retention device was designed allowing reliab...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.00450-10

    authors: Jørgensen TR,Nitsche BM,Lamers GE,Arentshorst M,van den Hondel CA,Ram AF

    更新日期:2010-08-01 00:00:00

  • Common occurrence of plasmid DNA and vancomycin resistance in Leuconostoc spp.

    abstract::Resistance to vancomycin permitted detection, in a culture of Streptococcus cremoris 290PC, of a contaminant gram-positive coccus. Morphological and physiological characteristics indicated that this bacterium was a strain of Leuconostoc sp., designated PO184. This strain contained four plasmid species, which were dist...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.48.6.1129-1133.1984

    authors: Orberg PK,Sandine WE

    更新日期:1984-12-01 00:00:00

  • Involvement of cyclopropane fatty acids in the response of Pseudomonas putida KT2440 to freeze-drying.

    abstract::Pseudomonas putida KT2440, a saprophytic soil bacterium that colonizes the plant root, is a suitable microorganism for the removal of pollutants and a stable host for foreign genes used in biotransformation processes. Because of its potential use in agriculture and industry, we investigated the conditions for the opti...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.72.1.472-477.2006

    authors: Muñoz-Rojas J,Bernal P,Duque E,Godoy P,Segura A,Ramos JL

    更新日期:2006-01-01 00:00:00

  • Production and Purification of Thermostable Amylase and Protease of Thermomonospora viridis.

    abstract::Maximum yields of amylase were produced by the thermophilic actinomycete Thermomonospora viridis in a modified Simpson and McCoy medium containing 1.5% corn starch and 0.5% mycological peptone with an initial pH 7.0. Best yields of amylase were obtained after incubation for 48 h, when the pH of the medium had risen to...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.33.1.59-64.1977

    authors: Upton ME,Fogarty WM

    更新日期:1977-01-01 00:00:00

  • The Sinorhizobium (Ensifer) fredii HH103 Nodulation Outer Protein NopI Is a Determinant for Efficient Nodulation of Soybean and Cowpea Plants.

    abstract::The type III secretion system (T3SS) is a specialized secretion apparatus that is commonly used by many plant and animal pathogenic bacteria to deliver proteins, termed effectors, to the interior of the host cells. These effectors suppress host defenses and interfere with signal transduction pathways to promote infect...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.02770-16

    authors: Jiménez-Guerrero I,Pérez-Montaño F,Medina C,Ollero FJ,López-Baena FJ

    更新日期:2017-02-15 00:00:00

  • Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-Ray crystallography and microcalorimetry.

    abstract::1,2,3-Trichloropropane (TCP) is a highly toxic and recalcitrant compound. Haloalkane dehalogenases are bacterial enzymes that catalyze the cleavage of a carbon-halogen bond in a wide range of organic halogenated compounds. Haloalkane dehalogenase LinB from Sphingobium japonicum UT26 has, for a long time, been consider...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.02416-06

    authors: Monincová M,Prokop Z,Vévodová J,Nagata Y,Damborsky J

    更新日期:2007-03-01 00:00:00

  • Role of the ptsN gene product in catabolite repression of the Pseudomonas putida TOL toluene degradation pathway in chemostat cultures.

    abstract::The Pseudomonas putida KT2440 TOL upper pathway is repressed under nonlimiting conditions in cells growing in chemostat with succinate as a carbon source. We show that the ptsN gene product IIA(Ntr) participates in this repression. Crc, involved in yeast extract-dependent repression in batch cultures, did not influenc...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.01067-06

    authors: Aranda-Olmedo I,Marín P,Ramos JL,Marqués S

    更新日期:2006-11-01 00:00:00

  • Chlorine injury and the enumeration of waterborne coliform bacteria.

    abstract::Injury induced in Escherichia coli cells by chlorination was studied from a physiological standpoint. Predictable and reproducible injury was found to occur rapidly in 0.5 mg of chlorine per liter and was reversible under nonselective conditions. There was an extended lag period in the growth of chlorinated cells not ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.37.3.633-641.1979

    authors: Camper AK,McFeters GA

    更新日期:1979-03-01 00:00:00

  • Use of hydrostatic pressure for inactivation of microbial contaminants in cheese.

    abstract::The objective of this study was to determine the effect of high pressure (HP) on the inactivation of microbial contaminants in Cheddar cheese (Escherichia coli K-12, Staphylococcus aureus ATCC 6538, and Penicillium roqueforti IMI 297987). Initially, cheese slurries inoculated with E. coli, S. aureus, and P. roqueforti...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/aem.66.11.4890-4896.2000

    authors: O'Reilly CE,O'Connor PM,Kelly AL,Beresford TP,Murphy PM

    更新日期:2000-11-01 00:00:00

  • Bacterial endosymbiont localization in Hyalesthes obsoletus, the insect vector of Bois noir in Vitis vinifera.

    abstract::One emerging disease of grapevine in Europe is Bois noir (BN), a phytoplasmosis caused by "Candidatus Phytoplasma solani" and spread in vineyards by the planthopper Hyalesthes obsoletus (Hemiptera: Cixiidae). Here we present the first full characterization of the bacterial community of this important disease vector co...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.02121-10

    authors: Gonella E,Negri I,Marzorati M,Mandrioli M,Sacchi L,Pajoro M,Crotti E,Rizzi A,Clementi E,Tedeschi R,Bandi C,Alma A,Daffonchio D

    更新日期:2011-02-01 00:00:00

  • Identification of DysI, the immunity factor of the streptococcal bacteriocin dysgalacticin.

    abstract::DysI is identified as the protein that confers specific immunity to dysgalacticin, a plasmid-encoded streptococcal bacteriocin. dysI is transcribed as part of the copG-repB-dysI replication-associated operon. DysI appears to function at the membrane level to prevent the inhibitory effects of dysgalacticin on glucose t...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.01707-10

    authors: Swe PM,Heng NC,Cook GM,Tagg JR,Jack RW

    更新日期:2010-12-01 00:00:00