Abstract:
:The web software CHOP was developed to visualize the 'wobbling' in the third codon position of aligned DNA sequences. The simple features of this tool allow users to easily find regions suspected of containing coding sequences (CDSs). The program also allows visualization of the nucleotide diversity between two genomic or gene sequences by graphically plotting the percentage identity between the two sequences. CHOP can also isolate highly conserved regions within both CDSs and non-CDSs. Highly conserved regions within CDSs include the regions with lower rates of synonymous substitution in which nucleotide sequences are expected to be under strong selective pressure. CHOP is available at http://bunsei2.med.u-tokai.ac.jp:8080/~ohtsuka/cds_finding.html.
journal_name
Nucleic Acids Resjournal_title
Nucleic acids researchauthors
Ohtsuka M,Horiuchi S,Kulski JK,Kimura M,Inoko Hdoi
10.1093/nar/gkh448keywords:
subject
Has Abstractpub_date
2004-07-01 00:00:00pages
W55-8issue
Web Server issueeissn
0305-1048issn
1362-4962pii
32/suppl_2/W55journal_volume
32pub_type
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