A new form of crystalline rubisco and the conversion to its common dodecahedral form.

Abstract:

:In this paper, we present a new purification procedure that yields a new crystalline form of rubisco and has enabled us to completely remove this most abundant protein from tobacco leaf extract. The crystals formed within 48 h after refrigeration at 4 degrees C at pH 5.6. However, these crystals were not well-ordered crystals and lacked well-defined facets or edges. The remaining leaf extract (fraction 2 protein) was void of rubisco. Conversion of this new crystalline form of rubisco to its common dodecahedral form was achieved by dialysing the protein solution in Tris buffer at pH 8.0 or purified water. Since the molecular size of its large subunit of rubisco (55 kD) is similar to that of the papillomavirus capsid protein, L1 (57 kD), its complete removal from fraction 2-protein may facilitate the detection, purification, and recovery of the Li protein.

journal_name

J Proteome Res

authors

Kwanyuen P,Allina SM,Weissinger AK,Wilson RF

doi

10.1021/pr025548e

keywords:

subject

Has Abstract

pub_date

2002-09-01 00:00:00

pages

471-3

issue

5

eissn

1535-3893

issn

1535-3907

journal_volume

1

pub_type

杂志文章
  • Targeted Metabolic Profiling of the Tg197 Mouse Model Reveals Itaconic Acid as a Marker of Rheumatoid Arthritis.

    abstract::Rheumatoid arthritis is a progressive, highly debilitating disease where early diagnosis, enabling rapid clinical intervention, would provide obvious benefits to patients, healthcare systems, and society. Novel biomarkers that enable noninvasive early diagnosis of the onset and progression of the disease provide one r...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00654

    authors: Michopoulos F,Karagianni N,Whalley NM,Firth MA,Nikolaou C,Wilson ID,Critchlow SE,Kollias G,Theodoridis GA

    更新日期:2016-12-02 00:00:00

  • Proteomic analyses of Caenorhabditis elegans dauer larvae and long-lived daf-2 mutants implicates a shared detoxification system in longevity assurance.

    abstract::The insulin/insulin-like growth factor-1 (IGF-1) signaling system is a public regulator of aging in the model animals Caenorhabditis elegans, Drosophila melanogaster, and Mus musculus. For the first time, proteomic analyses of the environmentally resistant and 'nonaging' C. elegans dauer stage and long-lived daf-2 mut...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9009639

    authors: Jones LM,Staffa K,Perally S,LaCourse EJ,Brophy PM,Hamilton JV

    更新日期:2010-06-04 00:00:00

  • Characterization of IQGAP1-containing complexes in NK-like cells: evidence for Rac 2 and RACK1 association during homotypic adhesion.

    abstract::IQGAP1 is a scaffolding protein that binds to a diverse array of signaling and structural molecules that are often associated with cell polarization and adhesion. Through interaction with its target proteins, IQGAP1 participates in multiple cellular functions, including Ca2+-calmodulin signaling, definition of cytoske...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060382t

    authors: Meng X,Krokhin O,Cheng K,Ens W,Wilkins JA

    更新日期:2007-02-01 00:00:00

  • Methamphetamine-induced sensitization is associated with alterations to the proteome of the prefrontal cortex: implications for the maintenance of psychotic disorders.

    abstract::Repeat administration of psychostimulants, such as methamphetamine, produces a progressive increase in locomotor activity (behavioral sensitization) in rodents that is believed to represent the underlying neurochemical changes driving psychoses. Alterations to the prefrontal cortex (PFC) are suggested to mediate the e...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500719f

    authors: Wearne TA,Mirzaei M,Franklin JL,Goodchild AK,Haynes PA,Cornish JL

    更新日期:2015-01-02 00:00:00

  • IR-MALDI-LDI combined with ion mobility orthogonal time-of-flight mass spectrometry.

    abstract::Most MALDI instrumentation uses UV lasers. We have designed a MALDI-IM-oTOF-MS which employs both a Nd:YAG laser pumped optical parametric oscillator (OPOTEK, lambda = 2.8-3.2 microm at 20 Hz) to perform IR-LDI or IR-MALDI and a Nd:YLF laser (Crystalaser, lambda = 249 nm at 200 Hz) for the UV. Ion mobility (IM) gives ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060055l

    authors: Woods AS,Ugarov M,Jackson SN,Egan T,Wang HY,Murray KK,Schultz JA

    更新日期:2006-06-01 00:00:00

  • Dual-source mass spectrometer with MALDI-LIT-ESI configuration.

    abstract::A novel linear ion trap (LIT) mass spectrometer with dual matrix-assisted laser desorption/ionization (MALDI) and electrospray ionization (ESI) ionization sources has been built in the MALDI-LIT-ESI configuration. The design features two independent ion source/ion optical channels connected to opposite ends of a singl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060514i

    authors: Smith SA,Blake TA,Ifa DR,Cooks RG,Ouyang Z

    更新日期:2007-02-01 00:00:00

  • Alterations in the Glycan Profile of Mouse Transferrin: New Insights in Collagen-Induced Arthritis.

    abstract::Transferrin purification from mice serum samples by immunoaffinity chromatography (IAC) was optimized in order to study the possible modifications occurring in its glycans in collagen-induced arthritis (CIA) samples. SDS-PAGE and nanoLC-MS/MS were used to monitor the IAC purification performance. Afterward, a relative...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00016

    authors: Mancera-Arteu M,Giménez E,Sancho J,Sanz-Nebot V

    更新日期:2020-04-03 00:00:00

  • Serum metabolic signature of minimal hepatic encephalopathy by (1)H-nuclear magnetic resonance.

    abstract::Minimal hepatic encephalopathy (MHE) reduces quality of life of cirrhotic patients, predicts overt hepatic encephalopathy, and is associated with poor prognosis. We hypothesized that MHE arises once metabolic alterations derived from the liver reach a particular threshold. Our aim was to assess whether metabolic profi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100486e

    authors: Jiménez B,Montoliu C,MacIntyre DA,Serra MA,Wassel A,Jover M,Romero-Gomez M,Rodrigo JM,Pineda-Lucena A,Felipo V

    更新日期:2010-10-01 00:00:00

  • Proteomics of nitrogen remobilization in poplar bark.

    abstract::Seasonal nitrogen (N) cycling in temperate deciduous trees involves the accumulation of bark storage proteins (BSPs) in phloem parenchyma and xylem ray cells. BSPs are anabolized using recycled N during autumn leaf senescence and later become a source of N during spring shoot growth as they are catabolized. Little is ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501090p

    authors: Islam N,Li G,Garrett WM,Lin R,Sriram G,Cooper B,Coleman GD

    更新日期:2015-02-06 00:00:00

  • Biology/Disease-Driven Initiative on Protein-Aggregation Diseases of the Human Proteome Project: Goals and Progress to Date.

    abstract::The Biology/Disease-driven (B/D) working groups of the Human Proteome Project are alliances of research groups aimed at developing or improving proteomic tools to support specific biological or disease-related research areas. Here, we describe the activities and progress to date of the B/D working group focused on pro...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/acs.jproteome.8b00401

    authors: Boersema PJ,Melnik A,Hazenberg BPC,Rezeli M,Marko-Varga G,Kamiie J,Portelius E,Blennow K,Zubarev RA,Polymenidou M,Picotti P

    更新日期:2018-12-07 00:00:00

  • Improved Integrated Whole Proteomic and Phosphoproteomic Profiles of Severe Acute Pancreatitis.

    abstract::Severe acute pancreatitis (SAP) is caused by complicated biological factors, and revealing its complex pathogenesis by single-target analysis is difficult. Systematic studies have developed slowly because extraction of degradable pancreatic proteins exposed to multiple proteases is challenging. We present integrated w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00229

    authors: Wang C,Zhang Y,Tan J,Chen B,Sun L

    更新日期:2020-06-05 00:00:00

  • Proteome analysis of cold acclimation in sunflower.

    abstract::Cold acclimation is the phenomenon in which plants are exposed to low, but nonfreezing, temperatures before exposure to drastic temperatures. To investigate how sunflower plants adjust their metabolism during cold treatment, a comparative proteomic approach, based on spectral counting data, was adopted to identify dif...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr101137q

    authors: Balbuena TS,Salas JJ,Martínez-Force E,Garcés R,Thelen JJ

    更新日期:2011-05-06 00:00:00

  • Metagenomic Taxonomy-Guided Database-Searching Strategy for Improving Metaproteomic Analysis.

    abstract::Metaproteomics provides a direct measure of the functional information by investigating all proteins expressed by a microbiota. However, due to the complexity and heterogeneity of microbial communities, it is very hard to construct a sequence database suitable for a metaproteomic study. Using a public database, resear...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00894

    authors: Xiao J,Tanca A,Jia B,Yang R,Wang B,Zhang Y,Li J

    更新日期:2018-04-06 00:00:00

  • Proteomic analysis of eccrine sweat: implications for the discovery of schizophrenia biomarker proteins.

    abstract::Liquid chromatography-tandem mass spectrometry (LC-MS/MS) and multiple reaction monitoring mass spectrometry (MRM-MS) proteomics analyses were performed on eccrine sweat of healthy controls, and the results were compared with those from individuals diagnosed with schizophrenia (SZ). This is the first large scale study...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2007957

    authors: Raiszadeh MM,Ross MM,Russo PS,Schaepper MA,Zhou W,Deng J,Ng D,Dickson A,Dickson C,Strom M,Osorio C,Soeprono T,Wulfkuhle JD,Petricoin EF,Liotta LA,Kirsch WM

    更新日期:2012-04-06 00:00:00

  • Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome.

    abstract::Recent advances in genome editing technologies have enabled the insertion of epitope tags at endogenous loci with relative efficiency. We describe an approach for investigation of protein interaction dynamics of the AMP-activated kinase complex AMPK using a catalytic subunit AMPKα2 (PRKAA2 gene) as the bait, based on ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00378

    authors: Stein BD,Herzig S,Martínez-Bartolomé S,Lavallée-Adam M,Shaw RJ,Yates JR 3rd

    更新日期:2019-10-04 00:00:00

  • Saccharomyces cerevisiae mitoproteome plasticity in response to recombinant alternative ubiquinol oxidase.

    abstract::The energy-dissipating alternative oxidase (AOX) from Hansenula anomala was expressed in Saccharomyces cerevisiae. The recombinant AOX was functional. A comparative analysis by two-dimensional differential in-gel electrophoresis (2D-DIGE) of mitochondrial protein patterns found in wild-type and recombinant AOX strains...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050346e

    authors: Mathy G,Navet R,Gerkens P,Leprince P,De Pauw E,Sluse-Goffart CM,Sluse FE,Douette P

    更新日期:2006-02-01 00:00:00

  • Unbiased False Discovery Rate Estimation for Shotgun Proteomics Based on the Target-Decoy Approach.

    abstract::Target-decoy approach (TDA) is the dominant strategy for false discovery rate (FDR) estimation in mass-spectrometry-based proteomics. One of its main applications is direct FDR estimation based on counting of decoy matches above a certain score threshold. The corresponding equations are widely employed for filtering o...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00144

    authors: Levitsky LI,Ivanov MV,Lobas AA,Gorshkov MV

    更新日期:2017-02-03 00:00:00

  • Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer.

    abstract::Advances in proteomics are continually driven by the introduction of new mass spectrometric instrumentation with improved performances. The recently introduced quadrupole Orbitrap (Q Exactive) tandem mass spectrometer allows fast acquisition of high-resolution higher-energy collisional dissociation (HCD) tandem mass s...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr3000249

    authors: Kelstrup CD,Young C,Lavallee R,Nielsen ML,Olsen JV

    更新日期:2012-06-01 00:00:00

  • Proteome changes after metabolic engineering to enhance aerobic mineralization of cis-1,2-dichloroethylene.

    abstract::Metabolically engineered Escherichia coli has previously been used to degrade cis-1,2-dichloroethylene (cis-DCE). The strains express the six genes of an evolved toluene ortho-monooxygenase from Burkholderia cepacia G4 (TOM-Green, which formed a reactive epoxide) with either (1) gamma-glutamylcysteine synthetase (GSHI...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060008t

    authors: Lee J,Cao L,Ow SY,Barrios-Llerena ME,Chen W,Wood TK,Wright PC

    更新日期:2006-06-01 00:00:00

  • Systems Biology Reveals NS4B-Cyclophilin A Interaction: A New Target to Inhibit YFV Replication.

    abstract::Yellow fever virus (YFV) replication is highly dependent on host cell factors. YFV NS4B is reported to be involved in viral replication and immune evasion. Here interactions between NS4B and human proteins were determined using a GST pull-down assay and analyzed using 1-DE and LC-MS/MS. We present a total of 207 prote...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00933

    authors: Vidotto A,Morais AT,Ribeiro MR,Pacca CC,Terzian AC,Gil LH,Mohana-Borges R,Gallay P,Nogueira ML

    更新日期:2017-04-07 00:00:00

  • Proteome mapping of human skim milk proteins in term and preterm milk.

    abstract::The abundant proteins in human milk have been well characterized and are known to provide nutritional, protective, and developmental advantages to both term and preterm infants. However, relatively little is known about the expression of the low abundance proteins that are present in human milk because of the technica...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2008797

    authors: Molinari CE,Casadio YS,Hartmann BT,Livk A,Bringans S,Arthur PG,Hartmann PE

    更新日期:2012-03-02 00:00:00

  • Occurrence and detection of phosphopeptide isomers in large-scale phosphoproteomics experiments.

    abstract::The past decade has been marked by the emergence of selective affinity media and sensitive mass spectrometry instrumentation that facilitated large-scale phosphoproteome analyses and expanded the repertoire of protein phosphorylation. Despite these remarkable advances, the precise location of the phosphorylation site ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300229m

    authors: Courcelles M,Bridon G,Lemieux S,Thibault P

    更新日期:2012-07-06 00:00:00

  • Thioridazine Alters the Cell-Envelope Permeability of Mycobacterium tuberculosis.

    abstract::The increasing occurrence of multidrug resistant tuberculosis exerts a major burden on treatment of this infectious disease. Thioridazine, previously used as a neuroleptic, is active against extensively drug resistant tuberculosis when added to other second- and third-line antibiotics. By quantitatively studying the p...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b01037

    authors: de Keijzer J,Mulder A,de Haas PE,de Ru AH,Heerkens EM,Amaral L,van Soolingen D,van Veelen PA

    更新日期:2016-06-03 00:00:00

  • Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry.

    abstract::We performed proteomic analyses of human olfactory epithelial tissue to identify missing proteins using liquid chromatography-tandem mass spectrometry. Using a next-generation proteomic pipeline with a < 1.0% false discovery rate at the peptide and protein levels, we identified 3731 proteins, among which five were mis...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00408

    authors: Hwang H,Jeong JE,Lee HK,Yun KN,An HJ,Lee B,Paik YK,Jeong TS,Yee GT,Kim JY,Yoo JS

    更新日期:2018-12-07 00:00:00

  • Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield.

    abstract::The solventogenic bacterium Clostridium acetobutylicum is an important species of the Clostridium community. To develop a fundamental tool that is useful for biological studies of C. acetobutylicum, we established a high resolution proteome reference map for this species. We identified 1206 spots representing 564 diff...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9012078

    authors: Mao S,Luo Y,Zhang T,Li J,Bao G,Zhu Y,Chen Z,Zhang Y,Li Y,Ma Y

    更新日期:2010-06-04 00:00:00

  • Ultra-Performance Liquid Chromatography-High-Resolution Mass Spectrometry and Direct Infusion-High-Resolution Mass Spectrometry for Combined Exploratory and Targeted Metabolic Profiling of Human Urine.

    abstract::The application of metabolic phenotyping to epidemiological studies involving thousands of biofluid samples presents a challenge for the selection of analytical platforms that meet the requirements of high-throughput precision analysis and cost-effectiveness. Here direct infusion-nanoelectrospray (DI-nESI) was compare...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00413

    authors: Chekmeneva E,Dos Santos Correia G,Gómez-Romero M,Stamler J,Chan Q,Elliott P,Nicholson JK,Holmes E

    更新日期:2018-10-05 00:00:00

  • Proteomics analysis reveals novel components in the detergent-insoluble subproteome in Alzheimer's disease.

    abstract::Neurodegenerative diseases are often defined pathologically by the presence of protein aggregates. These aggregates, including amyloid plaques in Alzheimer's disease (AD), result from the abnormal accumulation and processing of proteins, and may ultimately lead to neuronal dysfunction and cell death. To date, conventi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900474t

    authors: Gozal YM,Duong DM,Gearing M,Cheng D,Hanfelt JJ,Funderburk C,Peng J,Lah JJ,Levey AI

    更新日期:2009-11-01 00:00:00

  • Proteome Scale-Protein Turnover Analysis Using High Resolution Mass Spectrometric Data from Stable-Isotope Labeled Plants.

    abstract::Protein turnover is an important aspect of the regulation of cellular processes for organisms when responding to developmental or environmental cues. The measurement of protein turnover in plants, in contrast to that of rapidly growing unicellular organismal cultures, is made more complicated by the high degree of ami...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00772

    authors: Fan KT,Rendahl AK,Chen WP,Freund DM,Gray WM,Cohen JD,Hegeman AD

    更新日期:2016-03-04 00:00:00

  • Essential dynamics of helices provide a functional classification of EF-hand proteins.

    abstract::Low energy modes have been calculated for the largest possible number of available representatives (>150) of EF-hand domains belonging to different members of the calcium-binding EF-hand protein superfamily. These proteins are the major actors in signal transduction. The latter, in turn, relies on the dynamical proper...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070314m

    authors: Capozzi F,Luchinat C,Micheletti C,Pontiggia F

    更新日期:2007-11-01 00:00:00

  • Sonoreactor-based technology for fast high-throughput proteolytic digestion of proteins.

    abstract::Fast (120 s) and high-throughput (more than six samples at once) in-gel trypsin digestion of proteins using sonoreactor technology has been achieved. Successful protein identification was done by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, MALDI-TOF-MS. Specific identification of the ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060508m

    authors: Rial-Otero R,Carreira RJ,Cordeiro FM,Moro AJ,Fernandes L,Moura I,Capelo JL

    更新日期:2007-02-01 00:00:00