Abstract:
:In this work we report the development and characterization of 10 microsatellite loci for the endangered tree species Caryocar brasiliense. Using genomic library enrichment, the efficiency of SSR marker development was 14.4% from sequencing data to operationally useful loci. Primer sequences for this set of 10 loci are made available together with their estimates of expected heterozygosity, probability of paternity exclusion and probability of identity. Mendelian inheritance and segregation was confirmed for all 10 loci in open-pollinated half-sib families as well as the absolute transferability of these 10 loci to five other species of the same genus. Number of alleles per locus ranged from 10 to 22 with a mean value of 16 and expected heterozygosity varying from 0.84 to 0.94. The combined probability of genetic identity was on the order of 10-17 clearly demonstrating that SSR multilocus genotypes are likely to be unique and capable of readily discriminating individuals of C. brasiliense. The very high combined probability of paternity exclusion (0.99999995) also indicates that these markers will permit detailed parentage studies in natural populations even in situations where both maternity and paternity are unknown. The battery of microsatellite markers developed and characterized in this study opens a new perspective for the generation of fundamental population genetic data for devising sound collection and conservation procedures for C. brasiliense and related species of the genus.
journal_name
Heredity (Edinb)journal_title
Heredityauthors
Collevatti RG,Brondani RV,Grattapaglia Ddoi
10.1046/j.1365-2540.1999.00638.xkeywords:
subject
Has Abstractpub_date
1999-12-01 00:00:00pages
748-56eissn
0018-067Xissn
1365-2540pii
her638journal_volume
83 ( Pt 6)pub_type
杂志文章相关文献
HEREDITY文献大全abstract::Seed dormancy is a key adaptive trait under polygenic control in many plants. We introduced the chromosomal regions containing the dormancy QTLs qSD1, qSD7-1, and qSD12 from an accession of weedy rice into a nondormant genetic background to examine component genetic effects and their interactions with time of afterrip...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800757
更新日期:2006-01-01 00:00:00
abstract::Connectivity is widely recognized as an important component in developing effective management and conservation strategies. Although managers are generally most interested in demographic, rather than genetic connectivity, new analytic approaches are able to provide estimates of both demographic and genetic connectivit...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2013.58
更新日期:2013-10-01 00:00:00
abstract::Genomic rearrangements can result in losses, amplifications, translocations and inversions of DNA fragments thereby modifying genome architecture, and potentially having clinical consequences. Many genomic disorders caused by structural variation have initially been uncovered by early cytogenetic methods. The last dec...
journal_title:Heredity
pub_type: 杂志文章,评审
doi:10.1038/hdy.2011.100
更新日期:2012-01-01 00:00:00
abstract::Many traits including shapes and colors of flowers, fruits and seeds in plants, as well as coat colors and some behavioral properties in animals, are recorded in discrete categories. If categories are ordered, genetic analyses of the categorical traits are often performed using the threshold model, which considers a l...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800783
更新日期:2006-02-01 00:00:00
abstract::Flowering time differences between metal-tolerant and nontolerant populations of the grass Anthoxanthum odoratum growing across a mine boundary have persisted for over 40 years. These flowering time differences result in a high degree of prezygotic genetic isolation (isolation index=0.43) between the tolerant mine pop...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800835
更新日期:2006-07-01 00:00:00
abstract::A variety of questions in population and evolutionary biology are studied using chloroplast DNA (cpDNA). The presumed maternal inheritance in angiosperms allows for certain assumptions and calculations to be made when studying plant hybridization, phylogeography, molecular systematics and seed dispersal. Further, the ...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2008.11
更新日期:2008-06-01 00:00:00
abstract::Quantifying the effect of pollen dispersal and flowering traits on mating success is essential for understanding evolutionary responses to changing environments and establishing strategies for forest tree breeding. This study examined, quantitatively, the effects of male fecundity, interindividual distance and anisotr...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2011.76
更新日期:2012-03-01 00:00:00
abstract::WOLBACHIA are maternally inherited bacteria, which are very common in arthropods and nematodes. Wolbachia infection may affect host reproduction through feminisation, parthenogenesis, male-killing, cytoplasmic incompatibility and increased fecundity. Previous studies showing discrepancies between the phylogenies of Wo...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800601
更新日期:2005-03-01 00:00:00
abstract::Several studies on 5S ribosomal DNA (5S rDNA) have been focused on a subset of the following features in mostly one organism: number of copies, pseudogenes, secondary structure, promoter and terminator characteristics, genomic arrangements, types of non-transcribed spacers and evolution. In this work, we systematicall...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2013.63
更新日期:2013-11-01 00:00:00
abstract::A high-resolution transcript linkage map of barley was created using a single doubled haploid (DH) mapping population, only 3'-end expressed sequence tags (ESTs) and only PCR-based assays. Cultivar 'Haruna Nijo' and an ancestral wild-form accession 'H602' were used as EST donors and crossing parents of the mapping pop...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2009.57
更新日期:2009-08-01 00:00:00
abstract::Changes in chromosome number have a critical role in the evolution and formation of plant species. Triploids, which carry three complete sets of chromosomes, in particular produce offspring with different chromosome numbers, including diploid and tetraploid progeny, as well as a swarm of aneuploid progeny, which carry...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2009.81
更新日期:2009-12-01 00:00:00
abstract::Porcellionides pruinosus is a cosmopolitan woodlouse. It is known to exhibit patterns of geographical variation between populations, and has been suspected to consist of several very closely related species. This species was found to carry Wolbachia endosymbionts, alpha-proteobacteria which are known to modify the rep...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1046/j.1365-2540.2001.00920.x
更新日期:2001-10-01 00:00:00
abstract::I made use of the known dates of reclamation (and of afforestations) in the IJsselmeerpolders in The Netherlands to assess evolutionary adaptation in Cepaea nemoralis. At 12 localities (three in each polder), I sampled a total of 4390 adult individuals in paired open and shaded habitats, on average 233 m apart, and sc...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2012.74
更新日期:2013-03-01 00:00:00
abstract::Co-operative behaviour may evolve by enhancing the genetic similarity of group members. Increased group similarity is thought to be the basis for the 'subsocial route' of social evolution in the spider family Eresidae. Two processes may promote the similarity of individuals within populations or breeding groups, namel...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1046/j.1365-2540.1999.00528.x
更新日期:1999-06-01 00:00:00
abstract::A total of 76 sweet cherry genotypes were screened with 34 microsatellite primer pairs previously developed in peach. Amplification of SSR loci was obtained for 24 of the microsatellite primer pairs, and 14 of them produced polymorphic amplification patterns. On the basis of polymorphism and quality of amplification, ...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800101
更新日期:2002-07-01 00:00:00
abstract::In the silkworm, Bombyx mori, the female is the heterogametic (ZW) sex and the male is homogametic (ZZ). The female heterogamety is a typical situation in the insect order Lepidoptera. Although the W chromosome in silkworm is strongly female determining, no W-linked gene for a morphological character has been found on...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800700
更新日期:2005-08-01 00:00:00
abstract::How life-history strategies influence the evolution of populations is not well understood. Most existing models stem from the Wright-Fisher model which considers discrete generations and a fixed population size, thus not taking into account any potential consequences of overlapping generations and demographic stochast...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/s41437-018-0118-6
更新日期:2018-10-01 00:00:00
abstract::Chicken growth traits are economically important, but the relevant genetic mechanisms have not yet been elucidated. Herein, we performed a genome-wide association study to identify the variants associated with growth traits. In total, 860 chickens from a Gushi-Anka F2 resource population were phenotyped for 68 growth ...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/s41437-020-00365-x
更新日期:2020-09-28 00:00:00
abstract::The phytophagous insects that damage crops are often polyphagous, feeding on several types of crop and on weeds. The refuges constituted by noncrop host plants may be useful in managing the evolution in pest species of resistance to the Bacillus thuringiensis toxins produced by transgenic crops. However, the benefits ...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800186
更新日期:2003-02-01 00:00:00
abstract::When individuals interact, their phenotypes may be affected not only by their own genes but also by genes in their social partners. This phenomenon is known as Indirect Genetic Effects (IGEs). In aquaculture species and some plants, however, competition not only affects trait levels of individuals, but also inflates v...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/s41437-018-0068-z
更新日期:2018-12-01 00:00:00
abstract::Natural populations of the arctic fox (Alopex lagopus, Canidae, Carnivora) differ drastically in their reproductive strategy. Coastal foxes, which depend on stable food resources, produce litters of moderate size. Inland foxes feed on small rodents, whose populations are characterized by cycling fluctuation. In the ye...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800908
更新日期:2007-02-01 00:00:00
abstract::Habitat fragmentation is a major cause of biodiversity loss, responsible for an alteration of intraspecific patterns of neutral genetic diversity and structure. Although neutral genetic variation can be informative for demographic inferences, it may be a poor predictor of adaptive genetic diversity and thus of the con...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/s41437-020-00366-w
更新日期:2021-01-01 00:00:00
abstract::Gene flow via pollen movement affects genetic variation in plant populations and is an important consideration in plant domestication. Fontainea picrosperma is a subcanopy rainforest tree that is of commercial interest because it is the source of tigilanol tiglate, a natural product used for the treatment of solid tum...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/s41437-019-0231-1
更新日期:2019-10-01 00:00:00
abstract::Temperature-dependent sex determination (TSD) was first reported in 1966 in an African lizard. It has since been shown that TSD occurs in some fish, several lizards, tuataras, numerous turtles and all crocodilians. Extreme temperatures can also cause sex reversal in several amphibians and lizards with genotypic sex de...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2010.102
更新日期:2011-04-01 00:00:00
abstract::Understanding the evolution of female multiple mating (polyandry) is crucial for understanding sexual selection and sexual conflict. Despite this interest, little is known about its genetic basis or whether genetics influences the evolutionary origin or maintenance of polyandry. Here, we explore the quantitative genet...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800897
更新日期:2007-02-01 00:00:00
abstract::Using fast-evolving microsatellites, more slowly evolving ITS markers and performing habitat analyses, we demonstrated a drastic genetic divergence and significant habitat differentiation between early- and late-flowering variants of plants morphologically belonging to Gymnadenia conopsea ssp conopsea. The two phenolo...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800334
更新日期:2003-09-01 00:00:00
abstract::Phlebotomus ariasi is one of the two sandflies transmitting the causative agent of zoonotic leishmaniasis, Leishmania infantum, in France and Iberia, and provides a rare case study of the postglacial re-colonization of France by a Mediterranean species. Four DNA sequences were analysed-mitochondrial cytochrome b (cyt ...
journal_title:Heredity
pub_type: 历史文章,杂志文章
doi:10.1038/hdy.2010.111
更新日期:2011-05-01 00:00:00
abstract::Invasive species are believed to spread through a process of stratified dispersal consisting of short-distance diffusive spread around established foci and human mediated long-distance jumps. Brazilian peppertree (Schinus terebinthifolius), native to South America, was introduced twice as an ornamental plant into Flor...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800936
更新日期:2007-05-01 00:00:00
abstract::The theory, construction and optimization of a model of chromosome pairing in triploid hybrids are re-examined and the model reconstructed. A new approach to optimization is described that removes a bias in the estimation of x, the measure of relative affinity, by weighting the observed and calculated meiotic figure f...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.1992.16
更新日期:1992-02-01 00:00:00
abstract::The European bison (Bison bonasus) has recovered successfully after a severe bottleneck about 90 years ago but has been left with low genetic variability that may substantially hinder parentage and identity analysis. According to pedigree analysis, over 80% of the genes in the contemporary population descend from just...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2009.73
更新日期:2009-10-01 00:00:00