Reorganization of lipid domain structure in membranes by a transmembrane peptide: an ESR spin label study on the effect of the Escherichia coli outer membrane protein A signal peptide on the fluid lipid domain connectivity in binary mixtures of dimyristoy

Abstract:

:The effect of a transmembrane peptide on the domain structure of a two-component, two-phase lipid bilayer composed of dimyristoyl phosphatidylcholine (DMPC) and distearoyl phosphatidylcholine (DSPC) was examined by spin label electron spin resonance (ESR) spectroscopy. The peptide, pOmpA, is the hydrophobic, 25-residue signal sequence of the outer membrane protein A from Escherichia coli. Nitroxide derivatives of the phospholipid DSPC, 16-DSPCSL, and of the pOmpA signal peptide, pOmpA-IASL, were used as probes. The first-derivative lineshapes of the ESR spectra were analyzed using a normalized intensity ratio, R, that gives information on the average sizes of the disconnected fluid domains and their point of connectivity (Sankaram, M.B., D. Marsh, and T.E. Thompson. 1992. Biophys. J. 63:340-349). In the absence of the peptide, the number of fluid lipid domains does not vary with the fraction of lipid that is in the fluid phase, and phase conversion is accomplished solely by changes in the domain size. The phase boundaries of the lipid mixture remain largely unchanged by the presence of the peptide at mole fractions up to 0.02, but both the size and number of the fluid domains is changed, and the point at which they become connected is shifted to lower fractions of the fluid phase. In addition, the number of domains in the presence of the peptide no longer remains constant but increases from a domain density at low fractions of the fluid phase that is much lower than that in the absence of peptide to one that is comparable to the natural state in the absence of peptide at the point of domain connectivity. A simple model is presented for the process of domain fission, where the latter is determined by a balance between the effects of peptide concentration in the fluid domains, the line tension at the domain boundaries, and the distributional entropy of the domains.

journal_name

Biophys J

journal_title

Biophysical journal

authors

Sankaram MB,Marsh D,Gierasch LM,Thompson TE

doi

10.1016/S0006-3495(94)80989-0

subject

Has Abstract

pub_date

1994-06-01 00:00:00

pages

1959-68

issue

6

eissn

0006-3495

issn

1542-0086

pii

S0006-3495(94)80989-0

journal_volume

66

pub_type

杂志文章
  • Swelling of a lecithin lamellar phase induced by small carbohydrate solutes.

    abstract::In this paper, we consider the effect of adding small carbohydrate solutes (small sugars) to DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine) L(alpha) dispersions and the consequences on the force balance at zero osmotic pressure (maximal swelling). We show the importance of long incubations required to obtain sampl...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(02)75388-5

    authors: Demé B,Dubois M,Zemb T

    更新日期:2002-01-01 00:00:00

  • Signal/noise analysis of FRET-based sensors.

    abstract::Molecular sensors based on intramolecular Förster resonance energy transfer (FRET) have become versatile tools to monitor regulatory molecules in living tissue. However, their use is often compromised by low signal strength and excessive noise. We analyzed signal/noise (SNR) aspects of spectral FRET analysis methods, ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2010.07.053

    authors: Woehler A,Wlodarczyk J,Neher E

    更新日期:2010-10-06 00:00:00

  • Oxygen concentration inside a functioning photosynthetic cell.

    abstract::The excess oxygen concentration in the photosynthetic membranes of functioning oxygenic photosynthetic cells was estimated using classical diffusion theory combined with experimental data on oxygen production rates of cyanobacterial cells. The excess oxygen concentration within the plesiomorphic cyanobacterium Gloeoba...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2014.03.031

    authors: Kihara S,Hartzler DA,Savikhin S

    更新日期:2014-05-06 00:00:00

  • Computational Model of Chimeric Antigen Receptors Explains Site-Specific Phosphorylation Kinetics.

    abstract::Chimeric antigen receptors (CARs) have recently been approved for the treatment of hematological malignancies, but our lack of understanding of the basic mechanisms that activate these proteins has made it difficult to optimize and control CAR-based therapies. In this study, we use phosphoproteomic mass spectrometry a...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2018.08.018

    authors: Rohrs JA,Zheng D,Graham NA,Wang P,Finley SD

    更新日期:2018-09-18 00:00:00

  • Compressibilities and volume fluctuations of archaeal tetraether liposomes.

    abstract::Bipolar tetraether lipids (BTLs) are abundant in crenarchaeota, which thrive in both thermophilic and nonthermophilic environments, with wide-ranging growth temperatures (4-108°C). BTL liposomes can serve as membrane models to explore the role of BTLs in the thermal stability of the plasma membrane of crenarchaeota. I...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2010.09.061

    authors: Chong PL,Sulc M,Winter R

    更新日期:2010-11-17 00:00:00

  • Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

    abstract::The kinetic properties of the three taxonomic A substates of sperm whale carbonmonoxy myoglobin in 75% glycerol/buffer are studied by flash photolysis with monitoring in the infrared stretch bands of bound CO at nu(A0) approximately 1967 cm-1, nu(A1) approximately 1947 cm-1, and nu(A3) approximately 1929 cm-1 between ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(96)79359-1

    authors: Johnson JB,Lamb DC,Frauenfelder H,Müller JD,McMahon B,Nienhaus GU,Young RD

    更新日期:1996-09-01 00:00:00

  • Free energy cost of stretching mRNA hairpin loops inhibits small RNA binding.

    abstract::Small RNA-mRNA binding is an essential step in RNA interference, an important cellular regulatory process. Calculations of binding free energy have been used in binding site prediction, but the cost of stretching the mRNA loop when the small RNA-mRNA duplex forms requires further exploration. Here, using both polymer ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2012.12.017

    authors: Meng Y,Aalberts DP

    更新日期:2013-01-22 00:00:00

  • Molecular basis for Kir6.2 channel inhibition by adenine nucleotides.

    abstract::K(ATP) channels are comprised of a pore-forming protein, Kir6.x, and the sulfonylurea receptor, SURx. Interaction of adenine nucleotides with Kir6.2 positively charged amino acids such as K185 and R201 on the C-terminus causes channel closure. Substitution of these amino acids with other positively charged residues ha...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(03)74847-4

    authors: Ribalet B,John SA,Weiss JN

    更新日期:2003-01-01 00:00:00

  • Light scattering at various angles. Theoretical predictions of the effects of particle volume changes.

    abstract::The Mie theory of scattering is used to provide new information on how changes in particle volume, with no change in dry weight, should influence light scattering for various scattering angles and particle sizes. Many biological cells (e.g., algal cells, erythrocytes) and large subcellular structures (e.g., chloroplas...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(72)86120-4

    authors: Latimer P,Pyle BE

    更新日期:1972-07-01 00:00:00

  • Iron kinetics and erythron development.

    abstract::The mathematical model of steady-state iron kinetics in the human presented here extends the use of radioactive tracer observations in the determination of erythron maturative and proliferative behavior. Functions descriptive of that behavior appear explicitly in the model together with functions customarily measured ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(65)86750-9

    authors: Nooney GC

    更新日期:1965-11-01 00:00:00

  • The influenza fusion peptide adopts a flexible flat V conformation in membranes.

    abstract::Knowledge about the influenza fusion peptide (FP) membrane insertion mode is crucial for understanding its fusogenic mechanism. NMR and electron paramagnetic resonance experiments showed that in micelles, the FP inserted as a fixed-angle inverted V. In membranes, however, it was shown to insert as a straight α-helix (...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2012.04.003

    authors: Légaré S,Lagüe P

    更新日期:2012-05-16 00:00:00

  • Role of pairwise interactions between M1 and M2 domains of the nicotinic receptor in channel gating.

    abstract::The adult form of the nicotinic acetylcholine receptor (AChR) consists of five subunits (alpha(2)betaepsilondelta), each having four transmembrane domains (M1-M4). The atomic model of the nicotinic acetylcholine receptor shows that the pore-lining M2 domains make no extensive contacts with the rest of the transmembran...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.106.088757

    authors: Corradi J,Spitzmaul G,De Rosa MJ,Costabel M,Bouzat C

    更新日期:2007-01-01 00:00:00

  • Proton transport through influenza A virus M2 protein reconstituted in vesicles.

    abstract::Influenza A virus M2 protein is known to form acid-activated, proton-selective, amantadine-sensitive channels. We directly measured proton uptake in vesicles containing reconstituted M2 by monitoring external pH after addition of valinomycin to vesicles with 100-fold-diluted external [K(+)]. External pH typically incr...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.107.109082

    authors: Moffat JC,Vijayvergiya V,Gao PF,Cross TA,Woodbury DJ,Busath DD

    更新日期:2008-01-15 00:00:00

  • A nuclear magnetic resonance investigation of the energetics of basepair opening pathways in DNA.

    abstract::The opening of basepairs plays a key role in DNA replication and transcription, and in the action of DNA repair and modification enzymes. In this article, we have used proton exchange to define the energetics of the pathways for basepair opening in two DNA 17-mer duplexes. The rates of exchange of imino protons with s...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.105.065763

    authors: Coman D,Russu IM

    更新日期:2005-11-01 00:00:00

  • Do All X-ray Structures of Protein-Ligand Complexes Represent Functional States? EPOR, a Case Study.

    abstract::Based on differences between the x-ray crystal structures of ligand-bound and unbound forms, the activation of the erythropoietin receptor (EPOR) was initially proposed to involve a cross-action scissorlike motion. However, the validity of the motions involved in the scissorlike model has been recently challenged. Her...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2016.12.042

    authors: Corbett MSP,Mark AE,Poger D

    更新日期:2017-02-28 00:00:00

  • ASTRO-FOLD: a combinatorial and global optimization framework for Ab initio prediction of three-dimensional structures of proteins from the amino acid sequence.

    abstract::The field of computational biology has been revolutionized by recent advances in genomics. The completion of a number of genome projects, including that of the human genome, has paved the way toward a variety of challenges and opportunities in bioinformatics and biological systems engineering. One of the first challen...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(03)74640-2

    authors: Klepeis JL,Floudas CA

    更新日期:2003-10-01 00:00:00

  • Sacrificial bonds in polymer brushes from rat tail tendon functioning as nanoscale velcro.

    abstract::Polymers play an important role in many biological systems, so a fundamental understanding of their cross-links is crucial not only for the development of medicines but also for the development of biomimetic materials. The biomechanical movements of all mammals are aided by tendon fibrils. The self-organization and bi...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.104.056747

    authors: Gutsmann T,Hassenkam T,Cutroni JA,Hansma PK

    更新日期:2005-07-01 00:00:00

  • Hydrophobic Characteristic Is Energetically Preferred for Cysteine in a Model Membrane Protein.

    abstract::The naturally occurring amino acid cysteine has often been implicated with a crucial role in maintaining protein structure and stability. An intriguing duality in the intrinsic hydrophobicity of the cysteine side chain is that it exhibits both polar as well as hydrophobic characteristics. Here, we have utilized a cyst...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2019.05.024

    authors: Iyer BR,Mahalakshmi R

    更新日期:2019-07-09 00:00:00

  • Glutamate receptor-channel gating. Maximum likelihood analysis of gigaohm seal recordings from locust muscle.

    abstract::Gigaohm recordings have been made from glutamate receptor channels in excised, outside-out patches of collagenase-treated locust muscle membrane. The channels in the excised patches exhibit the kinetic state switching first seen in megaohm recordings from intact muscle fibers. Analysis of channel dwell time distributi...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(90)82367-5

    authors: Bates SE,Sansom MS,Ball FG,Ramsey RL,Usherwood PN

    更新日期:1990-07-01 00:00:00

  • Binding constants of Li+, K+, and Tl+ in the gramicidin channel determined from water permeability measurements.

    abstract::In an open circuit there can be no net cation flux through membranes containing only cation-selective channels, because electroneutrality must be maintained. If the channels are so narrow that water and cations cannot pass by each other, then the net water flux through those "single-file" channels that contain a catio...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(81)84804-7

    authors: Dani JA,Levitt DG

    更新日期:1981-08-01 00:00:00

  • Salt dependence of nucleic acid hairpin stability.

    abstract::Single-stranded junctions/loops are frequently occurring structural motifs in nucleic acid structures. Due to the polyanionic nature of the nucleic acid backbone, metal ions play a crucial role in the loop stability. Here we use the tightly bound ion theory, which can account for the possible ion correlation and ensem...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.108.131524

    authors: Tan ZJ,Chen SJ

    更新日期:2008-07-01 00:00:00

  • Compliance Accelerates Relaxation in Muscle by Allowing Myosin Heads to Move Relative to Actin.

    abstract::The mechanisms that limit the speed at which striated muscles relax are poorly understood. This work presents, to our knowledge, novel simulations that show that the time course of relaxation is accelerated by interfilamentary movement resulting from series compliance; force drops faster when myosin heads move relativ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2015.12.024

    authors: Campbell KS

    更新日期:2016-02-02 00:00:00

  • Interaction of the influenza hemagglutinin fusion peptide with lipid bilayers: area expansion and permeation.

    abstract::Fusion is a crucial event in the infection of animal cells by enveloped viruses (e.g., HIV or influenza). Viral fusion is mediated by glycoproteins, spanning the viral envelope, which attach to a membrane surface and induce fusion of the viral envelope to the cellular membrane. Influenza fusion protein (hemagglutinin)...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(97)78175-X

    authors: Longo ML,Waring AJ,Hammer DA

    更新日期:1997-09-01 00:00:00

  • Ligand Entry into Fatty Acid Binding Protein via Local Unfolding Instead of Gap Widening.

    abstract::Fatty acid binding proteins play an important role in the transportation of fatty acids. Despite intensive studies, how fatty acids enter the protein cavity for binding is still controversial. Here, a gap-closed variant of human intestinal fatty acid binding protein was generated by mutagenesis, in which the gap is lo...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2019.12.005

    authors: Xiao T,Lu Y,Fan JS,Yang D

    更新日期:2020-01-21 00:00:00

  • Nonlinear Elasticity of the ECM Fibers Facilitates Efficient Intercellular Communication.

    abstract::Biological cells embedded in fibrous matrices have been observed to form intercellular bands of dense and aligned fibers through which they mechanically interact over long distances. Such matrix-mediated cellular interactions have been shown to regulate various biological processes. This study aimed to explore the eff...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2018.07.036

    authors: Sopher RS,Tokash H,Natan S,Sharabi M,Shelah O,Tchaicheeyan O,Lesman A

    更新日期:2018-10-02 00:00:00

  • On the mechanism of ATP hydrolysis in F1-ATPase.

    abstract::Most of the cellular ATP in living organisms is synthesized by the enzyme F(1)F(o)-ATP synthase. The water soluble F(1) part of the enzyme can also work in reverse and utilize the chemical energy released during ATP hydrolysis to generate mechanical motion. Despite the availability of a large amount of biochemical dat...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(03)74650-5

    authors: Dittrich M,Hayashi S,Schulten K

    更新日期:2003-10-01 00:00:00

  • Long-residency hydration, cation binding, and dynamics of loop E/helix IV rRNA-L25 protein complex.

    abstract::Molecular dynamics simulations of RNA-protein complex between Escherichia coli loop E/helix IV (LE/HeIV) rRNA and L25 protein reveal a qualitative agreement between the experimental and simulated structures. The major groove of LE is a prominent rRNA cation-binding site. Divalent cations rigidify the LE major groove g...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.104.047126

    authors: Réblová K,Spacková N,Koca J,Leontis NB,Sponer J

    更新日期:2004-11-01 00:00:00

  • Correlation between absorption maxima and thermal isomerization rates in bacteriorhodopsin.

    abstract::The reported rates of thermal 13-cis to all-trans isomerization of the protonated Schiff base of retinal (PSBR) in solution and in bacteriorhodopsin (BR) are shown to be correlated with the red shift in the absorption maximum of the chromophore, though the linear fit is different for BR and for a model PSBR in solutio...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(91)82070-7

    authors: Milder SJ

    更新日期:1991-08-01 00:00:00

  • Antimicrobial peptide magainin I from Xenopus skin forms anion-permeable channels in planar lipid bilayers.

    abstract::The ionophore properties of magainin I, an antimicrobial and amphipathic peptide from the skin of Xenopus, were investigated in planar lipid bilayers. Circular dichroism studies, performed comparatively with alamethicin, in small or large unilamellar phospholipidic vesicles, point to a smaller proportion of alpha-heli...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(89)82746-8

    authors: Duclohier H,Molle G,Spach G

    更新日期:1989-11-01 00:00:00

  • Single-Molecule Stretching Shows Glycosylation Sets Tension in the Hyaluronan-Aggrecan Bottlebrush.

    abstract::Large bottlebrush complexes formed from the polysaccharide hyaluronan (HA) and the proteoglycan aggrecan contribute to cartilage compression resistance and are necessary for healthy joint function. A variety of mechanical forces act on these complexes in the cartilage extracellular matrix, motivating the need for a qu...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2020.08.016

    authors: Innes-Gold SN,Berezney JP,Saleh OA

    更新日期:2020-10-06 00:00:00