Abstract:
:Heterotachy occurs when the relative evolutionary rates among sites are not the same across lineages. Sequence alignments are likely to exhibit heterotachy with varying severity because the intensity of purifying selection and adaptive forces at a given amino acid or DNA sequence position is unlikely to be the same in different species. In a recent study, the influence of heterotachy on the performance of different phylogenetic methods was examined using computer simulation for a four-species phylogeny. Maximum parsimony (MP) was reported to generally outperform maximum likelihood (ML). However, our comparisons of MP and ML methods using the methods and evaluation criteria employed in that study, but considering the possible range of proportions of sites involved in heterotachy, contradict their findings and indicate that, in fact, ML is significantly superior to MP even under heterotachy.
journal_name
Mol Biol Evoljournal_title
Molecular biology and evolutionauthors
Gadagkar SR,Kumar Sdoi
10.1093/molbev/msi212subject
Has Abstractpub_date
2005-11-01 00:00:00pages
2139-41issue
11eissn
0737-4038issn
1537-1719pii
msi212journal_volume
22pub_type
信件abstract::The spread of farming out of the Balkans and into the rest of Europe followed two distinct routes: An initial expansion represented by the Impressa and Cardial traditions, which followed the Northern Mediterranean coastline; and another expansion represented by the LBK (Linearbandkeramik) tradition, which followed the...
journal_title:Molecular biology and evolution
pub_type: 杂志文章
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journal_title:Molecular biology and evolution
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pub_type: 杂志文章
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journal_title:Molecular biology and evolution
pub_type: 杂志文章
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更新日期:1997-09-01 00:00:00
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journal_title:Molecular biology and evolution
pub_type: 杂志文章
doi:10.1093/molbev/msv084
更新日期:2015-08-01 00:00:00
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pub_type: 杂志文章
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pub_type: 杂志文章
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更新日期:2012-01-01 00:00:00
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journal_title:Molecular biology and evolution
pub_type: 杂志文章
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pub_type: 杂志文章
doi:10.1093/molbev/msq277
更新日期:2011-02-01 00:00:00
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journal_title:Molecular biology and evolution
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pub_type: 杂志文章
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journal_title:Molecular biology and evolution
pub_type: 杂志文章
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更新日期:2009-06-01 00:00:00
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pub_type: 杂志文章
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更新日期:2011-03-01 00:00:00
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journal_title:Molecular biology and evolution
pub_type: 杂志文章
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更新日期:1998-05-01 00:00:00
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pub_type: 杂志文章
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pub_type: 杂志文章
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更新日期:2009-03-01 00:00:00
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journal_title:Molecular biology and evolution
pub_type: 杂志文章
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更新日期:1993-09-01 00:00:00
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pub_type: 杂志文章
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更新日期:2012-03-01 00:00:00