Abstract:
:The Brassicaceae family halophyte Thellungiella halophila has a high salinity tolerance and serves as a valuable halophytic genetic model plant with experimental convenience similar to Arabidopsis thaliana. A cDNA library of Thellungiella was generated from salt-treated seedlings including rosettes and roots. More than 1 000 randomly selected clones were sequenced and 946 expressed sequence tags (ESTs) were generated. The accession numbers of our EST data are available online in the GenBank database from EC598928 to EC599965. In total 679 unique clusters were assembled, and 632 (93%) had BLASTX hits in the nr databases and 7% are Thellungiella unique. According to the Gene Ontology (GO) hierarchy, 385 of 679 unigenes were categorized. Compared with public Arabidopsis microarray data, our results provide more potential salt tolerance genes in Thellungiella. These results will provide a broader coverage into Thellungiella transcriptome and benefit the discovery of salt tolerance related genes.
journal_name
J Integr Plant Bioljournal_title
Journal of integrative plant biologyauthors
Zhang Y,Lai J,Sun S,Li Y,Liu Y,Liang L,Chen M,Xie Qdoi
10.1111/j.1744-7909.2008.00740.xsubject
Has Abstractpub_date
2008-10-01 00:00:00pages
1327-35issue
10eissn
1672-9072issn
1744-7909pii
JIPB740journal_volume
50pub_type
杂志文章abstract::Maize (Zea mays) root system architecture (RSA) mediates the key functions of plant anchorage and acquisition of nutrients and water. In this study, a set of 204 recombinant inbred lines (RILs) was derived from the widely adapted Chinese hybrid ZD958(Zheng58 × Chang7-2), genotyped by sequencing (GBS) and evaluated as ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12452
更新日期:2016-03-01 00:00:00
abstract::In rice, one detrimental factor influencing single panicle yield is the frequent occurrence of panicle apical abortion (PAA) under unfavorable climatic conditions. Until now, no detailed genetic information has been available to avoid PAA in rice breeding. Here, we show that the occurrence of PAA is associated with th...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2011.01055.x
更新日期:2011-09-01 00:00:00
abstract::Short RNAs are 20-24 nucleotide long non-coding RNA molecules generated by one of the Dicer-like enzymes. They recognize specific RNA or DNA sequences and guide the RNA silencing complex to their targets leading to post-transcriptional or transcriptional gene silencing of the target. Most of our knowledge about short ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/j.1744-7909.2009.00871.x
更新日期:2010-04-01 00:00:00
abstract::Plants absorb sunlight to power the photochemical reactions of photosynthesis, which can potentially damage the photosynthetic machinery. However, the mechanism that protects chloroplasts from the damage remains unclear. In this work, we demonstrated that rice (Oryza sativa L.) SLAC7 is a generally expressed membrane ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12350
更新日期:2015-12-01 00:00:00
abstract::Pentatricopeptide repeat (PPR) proteins, composing one of the largest protein families in plants, are involved in RNA binding and regulation of organelle RNA metabolism at the post-transcriptional level. Although several PPR proteins have been implicated in endosperm development in rice (Oryza sativa), the molecular f...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.13049
更新日期:2020-12-07 00:00:00
abstract::In rice (Oryza sativa), amylose content (AC) is the major factor that determines eating and cooking quality (ECQ). The diversity in AC is largely attributed to natural allelic variation at the Waxy (Wx) locus. Here we identified a rare Wx allele, Wxmw , which combines a favorable AC, improved ECQ and grain transparenc...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.13010
更新日期:2020-09-04 00:00:00
abstract::The interaction between plants and pathogens represents a dynamic competition between a robust immune system and efficient infectious strategies. Plant innate immunity is composed of complex and highly regulated molecular networks, which can be triggered by the perception of either conserved or race-specific pathogeni...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12200
更新日期:2014-10-01 00:00:00
abstract::The ability of a plant to produce grain, fruit, or forage depends ultimately on photosynthesis. There have been few attempts, however, to study microRNAs, which are a class of endogenous small RNAs post-transcriptionally programming gene expression, in relation to photosynthetic traits. We focused on miR408, one of th...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12634
更新日期:2018-04-01 00:00:00
abstract::More than a billion people suffer from iron or zinc deficiencies globally. Rice (Oryza sativa L.) iron and zinc biofortification; i.e., intrinsic iron and zinc enrichment of rice grains, is considered the most effective way to tackle these deficiencies. However, rice iron biofortification, by means of conventional bre...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12751
更新日期:2018-12-01 00:00:00
abstract::This experiment aims to test the traits responsible for the increase in yield potential of winter wheat released in Henan Province, China. Seven established cultivars released in the last 20 years and three advanced lines were assayed. The results showed that grain yield was positively correlated with harvest index (H...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12148
更新日期:2014-05-01 00:00:00
abstract::Glucosinolates are amino acid-derived secondary metabolites that act as chemical defense agents against pests. However, the presence of high levels of glucosinolates severely diminishes the nutritional value of seed meals made from rapeseed (Brassica napus L.). To identify the loci affecting seed glucosinolate content...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12717
更新日期:2019-05-01 00:00:00
abstract::The amino-terminal residue of a protein (or amino-terminus of a peptide following protease cleavage) can be an important determinant of its stability, through the Ubiquitin Proteasome System associated N-degron pathways. Plants contain a unique combination of N-degron pathways (previously called the N-end rule pathway...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12882
更新日期:2020-01-01 00:00:00
abstract::Nitrogen-limited conditions are considered to be a prerequisite for legume-rhizobial symbiosis, but the effects of nitrate-rich conditions on symbiotic status remain poorly understood. We addressed this issue by examining rhizobial (Rhizobim tropici) and arbusclar mycorrhizal (Glomus intraradices) symbiosis in Phaseol...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12156
更新日期:2014-03-01 00:00:00
abstract::Drought stress has detrimental effects on plants. Although the abscisic acid (ABA)-mediated drought response is well established, defensive mechanisms to cope with dehydration-induced proteotoxicity have been rarely studied. DRR1 was identified as an Arabidopsis drought-induced gene encoding an ER-localized RING-type ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.13014
更新日期:2020-09-10 00:00:00
abstract::The endoplasmic reticulum forms the first compartment in a series of organelles which comprise the secretory pathway. It takes the form of an extremely dynamic and pleomorphic membrane-bounded network of tubules and cisternae which have numerous different cellular functions. In this review, we discuss the nature of en...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12297
更新日期:2015-01-01 00:00:00
abstract::In search for components of mitogen-activated protein kinase (MAPK) cascades in maize (Zea mays) involved in response to abscisic acid (ABA) stimulus, a novel MAPK gene, ZmMPK3, from ABA-treated maize leaves cDNA was isolated and characterized. The full length of the ZmMPK3 gene is 1 520 bp and encodes a 376 amino aci...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2010.00906.x
更新日期:2010-05-01 00:00:00
abstract::With the enhancement of copper (Cu) stress, the germination percentage of wheat seeds decreased gradually. Pretreatment with sodium hydrosulfide (NaHS), hydrogen sulfide (H(2)S) donor alleviated the inhibitory effect of Cu stress in a dose-dependent manner; whereas little visible symptom was observed in germinating se...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2008.00769.x
更新日期:2008-12-01 00:00:00
abstract::Plants utilize plasma membrane-localized receptor-like kinases (RLKs) to sense extracellular signals to coordinate growth, development, and innate immune responses. BAK1 regulates multiple signaling pathways acting as a co-receptor of several distinct ligand-binding RLKs. It has been debated whether BAK1 serves as an ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12122
更新日期:2013-12-01 00:00:00
abstract::Gene expression in chloroplasts is regulated by many nuclear-encoded proteins. In this study, we isolated a rice (Oryza sativa subsp. japonica) mutant osotp51 with significant reduction in photosystem I (PSI). The osotp51 is extremely sensitive to light and accumulates a higher level of reactive oxygen species. Its le...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2012.01094.x
更新日期:2012-02-01 00:00:00
abstract::It was noted that circadian components function in plant adaptation to diurnal temperature cycles and freezing tolerance. Our genome-wide transcriptome analysis revealed that evening-phased COR27 and COR28 mainly repress the transcription of clock-associated evening genes PRR5, ELF4 and cold-responsive genes. Chromati...
journal_title:Journal of integrative plant biology
pub_type: 信件
doi:10.1111/jipb.12512
更新日期:2017-02-01 00:00:00
abstract::Being sessile organisms, plants evolved an unparalleled plasticity in their post-embryonic development, allowing them to adapt and fine-tune their vital parameters to an ever-changing environment. Crosstalk between plants and their environment requires tight regulation of information exchange at the plasma membrane (P...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12059
更新日期:2013-09-01 00:00:00
abstract::We have identified hpm91, a Chlamydomonas mutant lacking Proton Gradient Regulation5 (PGR5) capable of producing hydrogen (H2 ) for 25 days with more than 30-fold yield increase compared to wild type. Thus, hpm91 displays a higher capacity of H2 production than a previously characterized pgr5 mutant. Physiological and...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12502
更新日期:2016-12-01 00:00:00
abstract::Vespicochory, seed dispersal by hornets, is a rare seed dispersal mechanism in angiosperms and, to date, there are few records of this phenomenon. Through field investigations and behavioral assays conducted in four populations of Stemona tuberosa from 2011-2016, we demonstrate that hornets are the primary seed disper...
journal_title:Journal of integrative plant biology
pub_type: 信件
doi:10.1111/jipb.12568
更新日期:2017-11-01 00:00:00
abstract::Delayed selfing could provide ovules with an opportunity to be fertilized as a means of "pollination assurance" before the flowers wilt. It could, thus, be regarded as an adaptation to unpredictable pollinator environments. Within the alpine biennial Gentianopsis paludosa, the showy flowers and herkogamy at the early ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2010.00951.x
更新日期:2010-06-01 00:00:00
abstract::Trait divergence between populations is considered an adaptive response to different environments, but to what extent this response is accompanied by genetic differentiation is less clear since it may be phenotypic plasticity. In this study, we analyzed phenotypic variation between two Banksia attenuata growth forms, ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12697
更新日期:2019-04-01 00:00:00
abstract::Oryza meyeriana Baill (GG genome) is a precious germplasm in the tertiary gene pool of cultivated rice (AA genome), and possesses important traits such as resistance and tolerance to biotic and abiotic stress. However, interspecific crossability barrier, a critical bottleneck restricting genes transfer from O. meyeria...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2008.00728.x
更新日期:2009-01-01 00:00:00
abstract::Hydrogen sulfide (H2 S) is a newly-discovered signaling molecule in plants and has caused increasing attention in recent years, but its function in stomatal movement is unclear. In plants, H2 S is synthesized via cysteine degradation catalyzed by D-/L-cysteine desulfhydrase (D-/L-CDes). AtD-/L-CDes::GUS transgenic Ara...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12004
更新日期:2013-03-01 00:00:00
abstract::In this study, we considered five categories of molecular markers in clonal F1 and double cross populations, based on the number of distinguishable alleles and the number of distinguishable genotypes at the marker locus. Using the completed linkage maps, incomplete and missing markers were imputed as fully informative...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12361
更新日期:2015-12-01 00:00:00
abstract::Gene expression studies are important for revealing gene functions putatively involved in biological processes. We were interested in identifying differentially expressed genes during leaf development in rice. We combined the RNA arbitrarily primed-polymerase chain reaction (RAP-PCR) and dot blot hybridization methods...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2008.00801.x
更新日期:2009-06-01 00:00:00
abstract::Brassinosteroids (BRs) play crucial roles in many aspects of plant development. However, their function in spikelet differentiation and degeneration in rice (Oryza sativa L.) remains unclear. Here, we investigated the roles of these phytohormones in spikelet development in field-grown rice subjected to five different ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12722
更新日期:2019-08-01 00:00:00