Expression and Purification of DGD2, a Chloroplast Outer Membrane-Associated Glycosyltransferase for Galactolipid Synthesis.

Abstract:

:Galactolipids are characteristic lipids of the photosynthetic membranes. They are highly enriched in the chloroplast and are present in photosystem structures. There are two major types of galactolipids, i.e., monogalactosyldiacylglycerol and digalactosyldiacylglycerol (DGDG) in chloroplastic membranes, which amount to ∼50 and ∼20 mol % of the total chloroplast lipids, respectively. Under phosphate-limiting conditions, the amount of DGDG increases dramatically for rescuing phosphate from phospholipids. In Arabidopsis thaliana, the gene digalactosyldiacylglycerol synthase 2 (DGD2) encodes a membrane-associated glycosyltransferase. The gene expression is highly responsive to phosphate starvation and is significantly upregulated in this case. To understand the molecular mechanism of DGD2, we established a protocol for DGD2 expression and purification in an Escherichia coli-based system. The work involved optimization of the expression condition and the purification protocol and a careful selection of buffer additives. It was found that a removal of around 70 C-terminal residues was necessary to produce a homogeneous monomeric protein sample with high purity, which was highly active. The purified sample was characterized by an activity assay for enzyme kinetics in which a range of membrane mimetics with different lipid compositions were used. The results demonstrate that DGD2 activity is stimulated by the presence of negatively charged lipids, which highlight the importance of the membrane environment in modulating the enzyme's activity. The study also paves way for future biophysical and structural studies of the enzyme.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Fu B,Brown C,Mäler L

doi

10.1021/acs.biochem.0c00028

subject

Has Abstract

pub_date

2020-03-03 00:00:00

pages

999-1009

issue

8

eissn

0006-2960

issn

1520-4995

journal_volume

59

pub_type

杂志文章
  • tRNA and the guanosinetriphosphatase activity of elongation factor Tu.

    abstract::Different sites of the tRNA molecule influence the activity of the elongation factor Tu (EF-Tu) center for GTP hydrolysis [Parlato, G., Pizzano, R., Picone, D., Guesnet, J., Fasano, O., & Parmeggiani, A. (1983) J. Biol. Chem. 258, 995-1000]. Continuing these studies, we have investigated some aspects of (a) the effect...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00427a044

    authors: Swart GW,Parmeggiani A

    更新日期:1989-01-10 00:00:00

  • Identification of factor XIIIA-reactive glutamine acceptor and lysine donor sites within fibronectin-binding protein (FnbA) from Staphylococcus aureus.

    abstract::Staphylococcal fibronectin-binding protein (FnbA) is a surface-associated receptor responsible for the reversible binding of bacteria to human fibronectin and fibrin(ogen). Recently we have shown that FnbA serves as a substrate for coagulation factor XIIIa and undergoes covalent cross-linking to its ligands, resulting...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049278k

    authors: Anderson ET,Fletcher L,Severin A,Murphy E,Baker SM,Matsuka YV

    更新日期:2004-09-21 00:00:00

  • Hydrodynamic and functional analysis of HIV-1 Vif oligomerization.

    abstract::HIV-1 Vif is an accessory protein that induces the proteasomal degradation of the host restriction factor, apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3G (APOBEC3G). The N-terminal half of Vif binds to APOBEC3G, and the C-terminal half binds to subunits of a cullin 5-based ubiquitin ligase. This Vi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201738a

    authors: Techtmann SM,Ghirlando R,Kao S,Strebel K,Maynard EL

    更新日期:2012-03-13 00:00:00

  • Cavitation as a mechanism of substrate discrimination by adenylosuccinate synthetases.

    abstract::Adenylosuccinate synthetase catalyzes the first committed step in the de novo biosynthesis of AMP, coupling L-aspartate and IMP to form adenylosuccinate. Km values of IMP and 2'-deoxy-IMP are nearly identical with each substrate supporting comparable maximal velocities. Nonetheless, the Km value for L-aspartate and th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0607498

    authors: Iancu CV,Zhou Y,Borza T,Fromm HJ,Honzatko RB

    更新日期:2006-09-26 00:00:00

  • Recognition of cisplatin-DNA interstrand cross-links by replication protein A.

    abstract::Replication protein A (RPA) is a heterotrimeric protein that is required for DNA replication and most DNA repair pathways. RPA has previously been shown to play a role in recognizing and binding damaged DNA during nucleotide excision repair (NER). RPA has also been suggested to play a role in psoralen DNA interstrand ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800460d

    authors: Patrick SM,Tillison K,Horn JM

    更新日期:2008-09-23 00:00:00

  • Identification of a lipolysis-stimulated receptor that is distinct from the LDL receptor and the LDL receptor-related protein.

    abstract::This paper provides further characterization of a receptor that, in cells lacking the LDL receptor (FH fibroblasts), mediates lipoprotein binding, uptake, and degradation when incubated with oleate at concentrations not exceeding albumin binding capacity. This oleate-activated receptor is genetically distinct from the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00171a017

    authors: Yen FT,Mann CJ,Guermani LM,Hannouche NF,Hubert N,Hornick CA,Bordeau VN,Agnani G,Bihain BE

    更新日期:1994-02-08 00:00:00

  • Optimization of alternate-strand triple helix formation at the 5'CpG3' and 5'GpC3' junction steps.

    abstract::Oligonucleotide-directed triple helix formation normally requires a long tract of oligopyrimidine.oligopurine sequence. This limitation can be partially overcome by alternate-strand triple helix (or switch triple helix) formation which enables recognition of alternating oligopurine/oligopyrimidine sequences. The prese...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980618+

    authors: Marchand C,Sun JS,Bailly C,Waring MJ,Garestier T,Hélène C

    更新日期:1998-09-22 00:00:00

  • Engineered disulfide linking the hinge regions within lactose repressor dimer increases operator affinity, decreases sequence selectivity, and alters allostery.

    abstract::The hinge domain encompasses amino acids 51-60 of lactose repressor (LacI) and plays an important role in its regulatory interaction with operator DNA. This segment makes both hinge-DNA and hinge-hinge' contacts that are critical to DNA binding. Furthermore, this small region serves as a central element in communicati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0114067

    authors: Falcon CM,Matthews KS

    更新日期:2001-12-25 00:00:00

  • Secondary structure of the ETS domain places murine Ets-1 in the superfamily of winged helix-turn-helix DNA-binding proteins.

    abstract::The members of the ets gene family of transcription factors are characterized by a conserved 85-residue DNA-binding region, termed the ETS domain, that lacks sequence homology to structurally characterized DNA-binding motifs. The secondary structure of the ETS domain of murine Ets-1 was determined on the basis of NMR ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00250a001

    authors: Donaldson LW,Petersen JM,Graves BJ,McIntosh LP

    更新日期:1994-11-22 00:00:00

  • An additional copy of the homologous region (hr1) sequence in the Autographa californica multinucleocapsid polyhedrosis virus genome promotes hyperexpression of foreign genes.

    abstract::The Autographa californica multinucleocapsid nuclear polyhedrosis virus genome contains nine homologous region (hr1, hr1a, hr2, hr2a, hr3, hr4a, hr4b, hr4c, and hr5) sequences that are thought to be involved in viral replication and activation of transcription. Our results show that the 750 bp hr1 sequence is capable ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049953q

    authors: Venkaiah B,Viswanathan P,Habib S,Hasnain SE

    更新日期:2004-06-29 00:00:00

  • NMR localization of divalent cations at the active site of the Neurospora VS ribozyme provides insights into RNA-metal-ion interactions.

    abstract::Metal cations represent key elements of RNA structure and function. In the Neurospora VS ribozyme, metal cations play diverse roles; they are important for substrate recognition, formation of the active site, and shifting the pKa's of two key nucleobases that contribute to the general acid-base mechanism. Recently, we...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401484a

    authors: Bonneau E,Legault P

    更新日期:2014-01-28 00:00:00

  • Expression of human insulin-like growth factor I in bacteria: use of optimized gene fusion vectors to facilitate protein purification.

    abstract::Several fusions between the gene for human insulin-like growth factor I (IGF-I) and the genes for different IgG-binding fragments of staphylococcal protein A were assembled and compared regarding expression, secretion, and purification of the peptide hormone. After IgG affinity purification of the fusion proteins from...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00391a005

    authors: Moks T,Abrahmsén L,Holmgren E,Bilich M,Olsson A,Uhlén M,Pohl G,Sterky C,Hultberg H,Josephson S

    更新日期:1987-08-25 00:00:00

  • High-resolution solution structure of the EGF-like domain of heregulin-alpha.

    abstract::The solution structure of the 63-residue heregulin-alpha (HRG-alpha) epidermal growth factor (EGF)-like domain, corresponding to residues 177-239 of HRG-alpha, has been determined to high resolution using data from two-dimensional and three-dimensional homo- and heteronuclear NMR spectroscopy. The structure is based o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952626l

    authors: Jacobsen NE,Abadi N,Sliwkowski MX,Reilly D,Skelton NJ,Fairbrother WJ

    更新日期:1996-03-19 00:00:00

  • Insights into the Mechanism of the Cyanobactin Heterocyclase Enzyme.

    abstract::Cyanobactin heterocyclases share the same catalytic domain (YcaO) as heterocyclases/cyclodehydratases from other ribosomal peptide (RiPPs) biosynthetic pathways. These enzymes process multiple residues (Cys/Thr/Ser) within the same substrate. The processing of cysteine residues proceeds with a known order. We show the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00084

    authors: Ge Y,Czekster CM,Miller OK,Botting CH,Schwarz-Linek U,Naismith JH

    更新日期:2019-04-23 00:00:00

  • Nucleotide- and substrate-induced conformational transitions in the CBS domain-containing pyrophosphatase of Moorella thermoacetica.

    abstract::In contrast to all other known pyrophosphatases, Moorella thermoacetica pyrophosphatase (mtCBS-PPase) contains nucleotide-binding CBS domains and is thus strongly regulated by adenine nucleotides. Stopped-flow measurements using a fluorescent AMP analogue, 2'(3')-O-(N-methylanthranoyl)-AMP (Mant-AMP), reveal that nucl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9019737

    authors: Jämsen J,Baykov AA,Lahti R

    更新日期:2010-02-09 00:00:00

  • Site-specific epitope tagging of G protein-coupled receptors by bioorthogonal modification of a genetically encoded unnatural amino acid.

    abstract::We developed a general strategy for labeling expressed membrane proteins with a peptide epitope tag and detecting the tagged proteins in native cellular membranes. First, we genetically encoded the unnatural amino acid p-azido-L-phenylalanine (azF) at various specific sites in a G protein-coupled receptor (GPCR), C-C ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi301292h

    authors: Naganathan S,Ye S,Sakmar TP,Huber T

    更新日期:2013-02-12 00:00:00

  • Mapping the microtubule binding regions of calponin.

    abstract::The smooth muscle basic calponin interacts with F-actin and inhibits the actomyosin ATPase in a calmodulin or phosphorylation modulated manner. It also binds in vitro to microtubules and its acidic isoform, present in nonmuscle cells, and co-localizes with microfilaments and microtubules in cultured neurons. To assess...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020336g

    authors: Fattoum A,Roustan C,Smyczynski C,Der Terrossian E,Kassab R

    更新日期:2003-02-11 00:00:00

  • Active-site mutations of the diphtheria toxin catalytic domain: role of histidine-21 in nicotinamide adenine dinucleotide binding and ADP-ribosylation of elongation factor 2.

    abstract::Diphtheria toxin (DT) has been studied as a model for understanding active-site structure and function in the ADP-ribosyltransferases. Earlier evidence suggested that histidine-21 of DT is important for the ADP-ribosylation of eukaryotic elongation factor 2 (EF-2). We have generated substitutions of this residue by ca...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00183a019

    authors: Blanke SR,Huang K,Wilson BA,Papini E,Covacci A,Collier RJ

    更新日期:1994-05-03 00:00:00

  • Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase.

    abstract::The Haemophilus influenzae diaminopimelate epimerase was cloned, expressed, purified, and crystallized in the C2221 space group (a = 102.1 A, b = 115.4 A, c = 66.3 A, alpha = beta = gamma = 90 degrees). The three-dimensional structure was solved to 2.7 A using a single Pt derivative and the Se-Met-substituted enzyme t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982138o

    authors: Cirilli M,Zheng R,Scapin G,Blanchard JS

    更新日期:1998-11-24 00:00:00

  • Nuclear magnetic resonance studies of carbonic anhydrase catalyzed reversible hydration of acetaldehyde by the saturation transfer method.

    abstract::The catalysis of the chemical exchange between acetaldehyde and its hydrate by bovine carbonic anhydrase B was investigated by the NMR line broadening and saturation transfer techniques. While both chemical exchange and binding to the enzyme had an effect on the line broadening of acetaldehyde and its hydrate, the sat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00550a021

    authors: Cheshnovsky D,Navon G

    更新日期:1980-04-29 00:00:00

  • Flexibility of end-labeled polymers from electron spin resonance line-shape analysis: 3' terminus of transfer ribonucleic acid and 5S ribonucleic acid.

    abstract::Saccharomyces cerevisiae tRNA and 5S RNA, Escherichia coli 5S RNA, and wheat germ 5S RNA have each been specifically spin-labeled at the 3'-terminal ribose to give morpholino-spin-labeled (MSL) RNAs. Enzymatic hydrolysis with pancreatic RNase, followed by anion-exchange chromatography, confirms the site of attachment ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00268a042

    authors: Luoma GA,Herring FG,Marshall AG

    更新日期:1982-12-07 00:00:00

  • Characterization of the internal motions of Escherichia coli ribonuclease HI by a combination of 15N-NMR relaxation analysis and molecular dynamics simulation: examination of dynamic models.

    abstract::The backbone dynamics of Escherichia coli ribonuclease HI (RNase HI) in the picosecond to nanosecond time scale were characterized by a combination of measurements of 15N-NMR relaxation (T1, T2, and NOE), analyzed by a model-free approach, and molecular dynamics (MD) simulation in water. The MD simulations in water we...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00020a003

    authors: Yamasaki K,Saito M,Oobatake M,Kanaya S

    更新日期:1995-05-23 00:00:00

  • Inhibition of InhA, the enoyl reductase from Mycobacterium tuberculosis, by triclosan and isoniazid.

    abstract::Structural and genetic studies indicate that the antibacterial compound triclosan, an additive in many personal care products, is an inhibitor of EnvM, the enoyl reductase from Escherichia coli. Here we show that triclosan specifically inhibits InhA, the enoyl reductase from Mycobacterium tuberculosis and a target for...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0008940

    authors: Parikh SL,Xiao G,Tonge PJ

    更新日期:2000-07-04 00:00:00

  • Engineering the zinc binding site of human carbonic anhydrase II: structure of the His-94-->Cys apoenzyme in a new crystalline form.

    abstract::The structure of the His-94-->Cys variant of human carbonic anhydrase II (CAII) has been determined by X-ray crystallographic methods to a resolution of 2.3 A with a final crystallographic R factor of 0.155. This variant of CAII crystallizes in orthorhombic space group P2(1)2(1)2(1) which is the first example of a new...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00057a015

    authors: Alexander RS,Kiefer LL,Fierke CA,Christianson DW

    更新日期:1993-02-16 00:00:00

  • Photoaffinity labeling of oxidosqualene cyclase and squalene cyclase by a benzophenone-containing inhibitor.

    abstract::A new orally active oxidosqualene:lanosterol cyclase (OSLC) inhibitor (Ro48-8071; Morand, O. H. et al. (1997) J. Lipid Res. 38, 373-390) showed potent noncompetitive inhibition of bacterial squalene:hopene cyclase (SHC) from Alicyclobacillus acidocaldarius (IC50 = 9.0 nM, KI = 6.6 nM) and OSLC (IC50 = 40 nM, KI = 22 n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980366c

    authors: Abe I,Zheng YF,Prestwich GD

    更新日期:1998-04-28 00:00:00

  • Crystallographic studies of isosteric NAD analogues bound to alcohol dehydrogenase: specificity and substrate binding in two ternary complexes.

    abstract::CNAD (5-beta-D-ribofuranosylnicotinamide adenine dinucleotide) is an isosteric C-glycosidic analogue of NAD(H) containing a neutral pyridine ring. CPAD (5-beta-D-ribofuranosylpicolinamide adenine dinucleotide) is a closely related pyridine-containing analogue with the pyridine nitrogen on the opposite side of the ring...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00205a009

    authors: Li H,Hallows WH,Punzi JS,Pankiewicz KW,Watanabe KA,Goldstein BM

    更新日期:1994-10-04 00:00:00

  • Crystal structure of the DNA decamer d(CGCAATTGCG) complexed with the minor groove binding drug netropsin.

    abstract::The crystal structure of netropsin bound to the decamer d(CGCAATTGCG) has been determined at 2.4 A resolution. This is the first example of a crystal structure of netropsin bound to decamer DNA. The central eight bases of each DNA single-strand base pair with a self-complementary strand to form an octamer B-DNA duplex...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9628228

    authors: Nunn CM,Garman E,Neidle S

    更新日期:1997-04-22 00:00:00

  • X-ray crystallographic and analytical ultracentrifugation analyses of truncated and full-length yeast copper chaperones for SOD (LYS7): a dimer-dimer model of LYS7-SOD association and copper delivery.

    abstract::Copper-zinc superoxide dismutase (CuZnSOD) acquires its catalytic copper ion through interaction with another polypeptide termed the copper chaperone for SOD. Here, we combine X-ray crystallographic and analytical ultracentrifugation methods to characterize rigorously both truncated and full-length forms of apo-LYS7, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992716g

    authors: Hall LT,Sanchez RJ,Holloway SP,Zhu H,Stine JE,Lyons TJ,Demeler B,Schirf V,Hansen JC,Nersissian AM,Valentine JS,Hart PJ

    更新日期:2000-04-04 00:00:00

  • Crystal structure of an eight-base pair duplex containing the 3'-DNA-RNA-5' junction formed during initiation of minus-strand synthesis of HIV replication.

    abstract::During initiation of minus-strand synthesis by HIV-1 reverse transcriptase, a 3'-DNA-RNA-5' junction is formed involving the 3'-end of tRNAlys,3. The HIV-RT-associated RNase H cleaves the RNA template strand specifically, opposite the newly synthesized DNA strand. We have determined the crystal structure at 1.9 A reso...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981152y

    authors: Mueller U,Maier G,Mochi Onori A,Cellai L,Heumann H,Heinemann U

    更新日期:1998-09-01 00:00:00

  • Purification of histamine receptor proteins from detergent-solubilized human peripheral blood mononuclear cells.

    abstract::Histamine is released from mast cells and basophils by either immunological or nonimmunological mechanisms. Histamine, which is the most potent short acting mediator released from these cells, exerts its diverse biological actions by binding to cell surface histamine receptors. We report the affinity purification of h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00182a008

    authors: Warlow RS,Rajasekariah P,Lambert P,Morgan J,Dao LP,Bernard CC,Walls RS

    更新日期:1994-04-26 00:00:00