ClubSub-P: Cluster-Based Subcellular Localization Prediction for Gram-Negative Bacteria and Archaea.

abstract：:Microbial strains with a unique combination of technological and bioactive properties are preferred for industrial applications. The present study was conducted to evaluate the potential use of Enterococcus mundtii QAUEM2808 (NCBI Accession Number: LSMC00000000) in milk fermentation. This strain was isolated from Dahi...

journal_title：Frontiers in microbiology

authors： Nawaz F,Khan MN,Javed A,Ahmed I,Ali N,Ali MI,Bakhtiar SM,Imran M

更新日期：2019-03-26 00:00:00

abstract：:Anaerobic digestion (AD) treatment of cattle manure and slurry makes it possible to produce biogas, a renewable and storable biofuel, as well as digestate, a residual organic matter that can be used to replace chemical fertilizers. On the other hand, the intense use of antibiotics (e.g., sulfamethoxazole) in animal hu...

journal_title：Frontiers in microbiology

authors： Mazzurco Miritana V,Massini G,Visca A,Grenni P,Patrolecco L,Spataro F,Rauseo J,Garbini GL,Signorini A,Rosa S,Barra Caracciolo A

更新日期：2020-09-16 00:00:00

abstract：:Illicit drugs, such as cocaine, are known to increase the likelihood and severity of HIV-1 associated neurocognitive disorders (HAND). In the current studies synaptic integrity was assessed following exposure to low concentrations of the HIV-1 viral protein Tat 1-86B, with or without cocaine, by quantifying filamentou...

journal_title：Frontiers in microbiology

authors： Bertrand SJ,Hu C,Aksenova MV,Mactutus CF,Booze RM

更新日期：2015-09-08 00:00:00

abstract：:Neisseria gonorrhoeae infections are a serious global health problem. This organism has developed disturbing levels of antibiotic resistance, resulting in the need for new approaches to prevent and treat gonorrhea. The genus Neisseria also includes several members of the human microbiome that live in close association...

journal_title：Frontiers in microbiology

authors： Aho EL,Ogle JM,Finck AM

更新日期：2020-12-03 00:00:00

abstract：:Despite their potential importance as analogs of primitive microbial metabolisms, the knowledge of the structure and functioning of the deep ecosystems associated with serpentinizing environments is hampered by the lack of accessibility to relevant systems. These hyperalkaline environments are depleted in dissolved in...

journal_title：Frontiers in microbiology

authors： Pisapia C,Gérard E,Gérard M,Lecourt L,Lang SQ,Pelletier B,Payri CE,Monnin C,Guentas L,Postec A,Quéméneur M,Erauso G,Ménez B

更新日期：2017-01-31 00:00:00

abstract：:Biofilm represents a way of life that allows greater survival of microorganisms in hostile habitats. Campylobacter jejuni is able to form biofilms in vitro and on surfaces at several points in the poultry production chain. Genetic determinants related to their formation are expressed differently between strains and ex...

journal_title：Frontiers in microbiology

authors： Melo RT,Mendonça EP,Monteiro GP,Siqueira MC,Pereira CB,Peres PABM,Fernandez H,Rossi DA

更新日期：2017-07-18 00:00:00

abstract：:Outer membrane vesicles (OMVs) play an important role in the persistence of Helicobacter pylori infection. Helicobacter OMVs carry a plethora of virulence factors, including catalase (KatA), an antioxidant enzyme that counteracts the host respiratory burst. We found KatA to be enriched and surface-associated in OMVs c...

journal_title：Frontiers in microbiology

authors： Lekmeechai S,Su YC,Brant M,Alvarado-Kristensson M,Vallström A,Obi I,Arnqvist A,Riesbeck K

更新日期：2018-09-07 00:00:00

abstract：:The effects of nodulation properties of legumes on the rhizosphere bacterial community are still not clear. To determine the effects of nodulation phenotypes on bacterial communities in the rhizosphere of soybean plants, we performed high-throughput sequencing of the 16S rRNA gene to estimate the rhizosphere bacterial...

journal_title：Frontiers in microbiology

authors： Wang H,Gu C,Liu X,Yang C,Li W,Wang S

更新日期：2020-05-12 00:00:00

abstract：:A yeast strain was isolated during a study on vineyard-associated yeast strains from Apulia in Southern Italy. ITS and LSU D1/D2 rDNA sequences showed this strain not to belong to any known species and was described as the type strain of Ogataea uvarum sp. nov., a close relative of O. philodendri. Several secondary pe...

journal_title：Frontiers in microbiology

authors： Roscini L,Tristezza M,Corte L,Colabella C,Perrotta C,Rampino P,Robert V,Vu D,Cardinali G,Grieco F

更新日期：2018-08-03 00:00:00

abstract：:Chlorpyrifos (CP) is one of the most widely used organophosphate pesticides in agriculture worldwide, but its extensive use has led to the contamination of various soil and water systems. Microbial bioremediation is considered to be one of the most viable options for the removal of CP from the environment; however, li...

journal_title：Frontiers in microbiology

authors： Rayu S,Nielsen UN,Nazaries L,Singh BK

更新日期：2017-04-04 00:00:00

abstract：:Human endogenous retroviruses (ERVs) have been found to be associated with different diseases, e.g., multiple sclerosis (MS). Most human ERVs integrated in our genome are not competent to replicate and these sequences are presumably silent. However, transcription of human ERVs can be reactivated, e.g., by hypoxia. Int...

journal_title：Frontiers in microbiology

authors： Brütting C,Narasimhan H,Hoffmann F,Kornhuber ME,Staege MS,Emmer A

更新日期：2018-02-21 00:00:00

abstract：:The rate of invasive group B Streptococcus (GBS) infections is steadily increasing, particularly in older persons and in adults with diabetes and other comorbidities. This population includes persons with a foreign body (e.g., who have undergone arthroplasty). In a rat tissue cage model, we evaluated the efficacy of a...

journal_title：Frontiers in microbiology

authors： Ruppen C,Mercier T,Grandgirard D,Leib SL,El Haj C,Murillo O,Decosterd L,Sendi P

更新日期：2018-05-15 00:00:00

abstract：:Accurately identifying bacteriophage virion proteins from uncharacterized sequences is important to understand interactions between the phage and its host bacteria in order to develop new antibacterial drugs. However, identification of such proteins using experimental techniques is expensive and often time consuming; ...

journal_title：Frontiers in microbiology

authors： Manavalan B,Shin TH,Lee G

更新日期：2018-03-16 00:00:00

abstract：:The human enteric pathogen Salmonella enterica leads a cross-kingdom lifestyle, actively colonizing and persisting on plants in between animal hosts. One of the questions that arises from this dual lifestyle is how S. enterica is able to adapt to such divergent hosts. Metabolic pathways required for S. enterica animal...

journal_title：Frontiers in microbiology

authors： Kwan G,Plagenz B,Cowles K,Pisithkul T,Amador-Noguez D,Barak JD

更新日期：2018-05-08 00:00:00

abstract：:The heparin-binding hemagglutinin adhesin (HBHA) is an important virulence factor of Mycobacterium tuberculosis. It is a surface-displayed protein that serves as an adhesin for non-phagocytic cells and is involved in extra-pulmonary dissemination of the tubercle bacillus. It is also an important latency antigen useful...

journal_title：Frontiers in microbiology

authors： Raze D,Verwaerde C,Deloison G,Werkmeister E,Coupin B,Loyens M,Brodin P,Rouanet C,Locht C

更新日期：2018-09-24 00:00:00

abstract：:107 bacterial isolates with Gram positive staining and negative catalase activity, presumably assumed as lactic acid bacteria, were isolated from samples of meconium of 6 donors at Roubaix hospital, in the north of France. All these bacterial isolates were identified by MALDI-TOF mass spectrometry as Enterococcus faec...

journal_title：Frontiers in microbiology

authors： Al Atya AK,Drider-Hadiouche K,Ravallec R,Silvain A,Vachee A,Drider D

更新日期：2015-04-02 00:00:00

abstract：:In Low and Middle-Income Countries (LMIC), weaning is associated with environmentally acquired and inflammation-associated enteric disorders. Dietary intake of high amylose maize starch (HAMS) can promote commensal fermentative bacteria and drive the production of short chain fatty acids (SCFAs). By stabilizing commen...

journal_title：Frontiers in microbiology

authors： Wang Y,Mortimer EK,Katundu KGH,Kalanga N,Leong LEX,Gopalsamy GL,Christophersen CT,Richard AC,Shivasami A,Abell GCJ,Young GP,Rogers GB

更新日期：2019-06-26 00:00:00

abstract：:Influenza virus RNA-dependent RNA polymerase (RdRp) is a heterotrimer of three viral proteins, PB1, PB2, and PA and is involved in both transcription and replication of the negative strand of the viral RNA (vRNA) genome. RdRp is multifunctional, possessing RNA polymerase, cap binding, and endonuclease activities. The ...

journal_title：Frontiers in microbiology

authors： Miyake Y,Ishii K,Honda A

更新日期：2017-02-09 00:00:00

abstract：:Photorhabdus luminescens TTO1 and Xenorhabdus nematophila HGB081 are insect pathogenic bacteria and producers of various structurally diverse bioactive natural products. In these entomopathogenic bacteria we investigated the role of the global regulators Lrp, LeuO, and HexA in the production of natural products. Lrp i...

journal_title：Frontiers in microbiology

authors： Engel Y,Windhorst C,Lu X,Goodrich-Blair H,Bode HB

更新日期：2017-02-17 00:00:00

abstract：:Type three secretion system (T3SS) is essential for Ralstonia solanacearum to cause disease in host plants and we previously screened AroG1 as a candidate with impact on the T3SS expression. Here, we focused on two putative DAHP synthases of AroG1 and AroG2, which control the first step of the shikimate pathway, a com...

journal_title：Frontiers in microbiology

authors： Zhang W,Li J,Shi X,Hikichi Y,Zhang Y,Ohnishi K

更新日期：2019-02-12 00:00:00

abstract：:Since the discovery 2-3 decades ago that viruses of microbes are abundant in marine ecosystems, viral ecology has grown increasingly to reach the status of a full scientific discipline in environmental sciences. A dedicated ISVM society, the International Society for Viruses of Microorganisms, (http://www.isvm.org/) w...

journal_title：Frontiers in microbiology

authors： Sime-Ngando T

更新日期：2014-07-24 00:00:00

abstract：:The discovery of exoplanets within putative habitable zones revolutionized astrobiology in recent years. It stimulated interest in the question about the origin of life and its evolution. Here, we discuss what the roles of viruses might have been at the beginning of life and during evolution. Viruses are the most abun...

journal_title：Frontiers in microbiology

authors： Moelling K,Broecker F

更新日期：2019-03-19 00:00:00

abstract：:Clostridium difficile PCR ribotype (RT) 014 is well-established in both human and porcine populations in Australia, raising the possibility that C. difficile infection (CDI) may have a zoonotic or foodborne etiology. Here, whole genome sequencing and high-resolution core genome phylogenetics were performed on a contem...

journal_title：Frontiers in microbiology

authors： Knight DR,Squire MM,Collins DA,Riley TV

更新日期：2017-01-11 00:00:00

abstract：:HIV infection and illicit drugs are known to induce oxidative stress and linked with severity of viral replication, disease progression, impaired cell cycle regulation and neurodegeneration. Studies have shown that morphine accelerates HIV infection and disease progression mediated by Reactive oxygen species (ROS). Ox...

journal_title：Frontiers in microbiology

authors： Samikkannu T,Ranjith D,Rao KV,Atluri VS,Pimentel E,El-Hage N,Nair MP

更新日期：2015-06-23 00:00:00

abstract：:Giardiasis, currently considered a neglected disease, is caused by the intestinal protozoan parasite Giardia duodenalis and is widely spread in human as well as domestic and wild animals. The lack of appropriate medications and the spread of resistant parasite strains urgently call for the development of novel therape...

journal_title：Frontiers in microbiology

authors： Travers MA,Sow C,Zirah S,Deregnaucourt C,Chaouch S,Queiroz RM,Charneau S,Allain T,Florent I,Grellier P

更新日期：2016-09-27 00:00:00

abstract：:Background: In Australia, community-associated methicillin-resistant Staphylococcus aureus (MRSA) lineage sequence type (ST) 93 has rapidly risen to dominance since being described in the early 1990s. We examined 459 ST93 genome sequences from Australia, New Zealand, Samoa, and Europe to investigate the evolutionary h...

journal_title：Frontiers in microbiology

authors： van Hal SJ,Steinig EJ,Andersson P,Holden MTG,Harris SR,Nimmo GR,Williamson DA,Heffernan H,Ritchie SR,Kearns AM,Ellington MJ,Dickson E,de Lencastre H,Coombs GW,Bentley SD,Parkhill J,Holt DC,Giffard PM,Tong SYC

更新日期：2018-07-09 00:00:00

abstract：:Biological nitrogen fixation plays a crucial role in the nitrogen cycle. An ability to fix atmospheric nitrogen, reducing it to ammonium, was described for multiple species of Bacteria and Archaea. The transcriptional regulatory network for nitrogen fixation was extensively studied in several representatives of the cl...

journal_title：Frontiers in microbiology

authors： Tsoy OV,Ravcheev DA,Čuklina J,Gelfand MS

更新日期：2016-08-26 00:00:00

abstract：:Colistin has long been a reserve drug used for the treatment of carbapenem resistant Klebsiella pneumoniae. Carbapenem resistance in K. pneumoniae has been increasing and is as high as 44% in India. Although a reserve agent, with rise in rates of resistance to carbapenems, the usage of colistin has increased over the ...

journal_title：Frontiers in microbiology

authors： Pragasam AK,Shankar C,Veeraraghavan B,Biswas I,Nabarro LE,Inbanathan FY,George B,Verghese S

更新日期：2017-01-09 00:00:00

abstract：:In this study, 39 sediment samples were collected from Qilian Island, Iltis Bank, and Yongxing Island in Xuande Atoll in the South China Sea (SCS), and the microbial community structures and distribution were analyzed. The microbial community was influenced by both natural environmental factors and human activities. T...

journal_title：Frontiers in microbiology

authors： Zhang B,Li Y,Xiang SZ,Yan Y,Yang R,Lin MP,Wang XM,Xue YL,Guan XY

更新日期：2020-05-25 00:00:00

abstract：:Ebolavirus (EBOV) is an enveloped, non-segmented, negative-stranded RNA virus, which consists of five species: Zaire ebolavirus, Sudan ebolavirus, Tai Forest ebolavirus, Bundibugyo ebolavirus, and Reston ebolavirus. EBOV causes a lethal hemorrhagic fever in both humans and non-human primates. The EBOV RNA genome encod...

journal_title：Frontiers in microbiology

authors： Yasuda J

更新日期：2012-04-02 00:00:00