PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine.

abstract：:Microbial dissimilatory sulfate reduction to sulfide is a predominant terminal pathway of organic matter mineralization in the anoxic seabed. Chemical or microbial oxidation of the produced sulfide establishes a complex network of pathways in the sulfur cycle, leading to intermediate sulfur species and partly back to ...

journal_title：Frontiers in microbiology

authors： Jørgensen BB,Findlay AJ,Pellerin A

更新日期：2019-04-24 00:00:00

abstract：:The changes of gastric microbiome across stages of neoplastic progression remain poorly understood, especially for intraepithelial neoplasia (IN) which has been recognized as a phenotypic bridge between atrophic/intestinal metaplastic lesions and invasive cancer. The gastric microbiota was investigated in 30 healthy c...

journal_title：Frontiers in microbiology

authors： Wang Z,Gao X,Zeng R,Wu Q,Sun H,Wu W,Zhang X,Sun G,Yan B,Wu L,Ren R,Guo M,Peng L,Yang Y

更新日期：2020-05-29 00:00:00

abstract：:The practice of inoculating forage legumes with rhizobia strains is widespread. It is assumed that the inoculated strain determines the performance of the symbiosis and nitrogen fixation rates. However, native-naturalized strains can be competitive, and actual nodule occupancy is often scarcely investigated. In conseq...

journal_title：Frontiers in microbiology

authors： Irisarri P,Cardozo G,Tartaglia C,Reyno R,Gutiérrez P,Lattanzi FA,Rebuffo M,Monza J

更新日期：2019-04-23 00:00:00

abstract：:Expression of xCT, a component of the xc (-) amino-acid transporter, is essential for the uptake of cystine required for intracellular glutathione (GSH) synthesis and maintenance of the intracellular redox balance. Therefore, xCT plays an important role not only in the survival of somatic and immune cells, but also in...

journal_title：Frontiers in microbiology

authors： Dai L,Noverr MC,Parsons C,Kaleeba JA,Qin Z

更新日期：2015-02-19 00:00:00

abstract：:Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding its evolution, genetic diversity and the mechanisms involved in drug resistance. A large number of sequencing efforts from across the globe have revealed genetic diversity among clinical isolates and the genetic determin...

journal_title：Frontiers in microbiology

authors： Advani J,Verma R,Chatterjee O,Pachouri PK,Upadhyay P,Singh R,Yadav J,Naaz F,Ravikumar R,Buggi S,Suar M,Gupta UD,Pandey A,Chauhan DS,Tripathy SP,Gowda H,Prasad TSK

更新日期：2019-02-26 00:00:00

abstract：:Paracoccidioidomycosis (PCM) is an endemic mycosis in Latin American caused by the thermodimorphic fungi of the genus Paracoccidioides spp. Notably, a Th1 immune response is required to control PCM. In this context, dendritic cells (DCs) seem to be essential players in capture, processing and presentation of Paracocci...

journal_title：Frontiers in microbiology

authors： Silva LBR,Taira CL,Dias LS,Souza ACO,Nosanchuk JD,Travassos LR,Taborda CP

更新日期：2019-07-31 00:00:00

abstract：:Our perspective on nature has changed throughout history and at the same time has affected directly or indirectly our perception of biological processes. In that sense, the "fluxus" of information in a viral population arises a result of a much more complex process than the encoding of a protein by a gene, but as the ...

journal_title：Frontiers in microbiology

authors： Scolaro LA,Roldan JS,Theaux C,Damonte EB,Carlucci MJ

更新日期：2017-12-22 00:00:00

abstract：:Bacillus cereus is a gram-positive pathogen mainly known to evoke two types of foodborne poisonings. The diarrheal syndrome is caused by enterotoxins produced during growth in the intestine. In contrast, the emetic type is caused by the dodecadepsipeptide cereulide pre-formed in food. Usually, both diseases are self-l...

journal_title：Frontiers in microbiology

authors： Bauer T,Sipos W,Stark TD,Käser T,Knecht C,Brunthaler R,Saalmüller A,Hofmann T,Ehling-Schulz M

更新日期：2018-11-07 00:00:00

abstract：:Human breast milk is widely recognized as the best source of nutrients for healthy growth and development of infants; it contains a diverse microbiota. Here, we characterized the diversity of the microbiota in the breast milk of East Asian women and assessed whether delivery mode influenced the microbiota in the milk ...

journal_title：Frontiers in microbiology

authors： Li SW,Watanabe K,Hsu CC,Chao SH,Yang ZH,Lin YJ,Chen CC,Cao YM,Huang HC,Chang CH,Tsai YC

更新日期：2017-05-30 00:00:00

abstract：:In the current study, we focused on the mechanism underlying starch flocculation by the sweet potato sour liquid. The traditional microbial techniques and 16S rDNA sequencing revealed that Lactobacillus was dominant flocculating microorganism in sour liquid. In total, 86 bacteria, 20 yeasts, and 10 molds were isolated...

journal_title：Frontiers in microbiology

authors： Zhang L,Yu Y,Li X,Li X,Zhang H,Zhang Z,Xu Y

更新日期：2017-07-25 00:00:00

abstract：:Experimental manipulation of the intestinal microbiota influences health of the host and is a common application for synbiotics. Here Clostridium butyricum (C. butyricum, C.B) combined with corn bran (C.B + Bran) was taken as the synbiotics application in a waned pig model to investigate its regulation of intestinal h...

journal_title：Frontiers in microbiology

authors： Zhang J,Sun J,Chen X,Nie C,Zhao J,Guan W,Lei L,He T,Chen Y,Johnston LJ,Zhao J,Ma X

更新日期：2018-12-18 00:00:00

abstract：:Staphylococcus capitis is an opportunistic pathogen of the coagulase negative staphylococci (CoNS). Functional genomic studies of S. capitis have thus far been limited by a lack of available complete genome sequences. Here, we determined the closed S. capitis genome and methylome using Single Molecule Real Time (SMRT)...

journal_title：Frontiers in microbiology

authors： Cameron DR,Jiang JH,Hassan KA,Elbourne LD,Tuck KL,Paulsen IT,Peleg AY

更新日期：2015-09-23 00:00:00

abstract：:While combinations of probiotics with antibiotics have exhibited beneficial and adverse effects in the treatment of Clostridium difficile infection (CDI), no substantive explanation has been provided for these effects. In this study, C. difficile ATCC 9689 (CD) was treated with Bifidobacterium breve (YH68) in combinat...

journal_title：Frontiers in microbiology

authors： Yang J,Yang H

更新日期：2018-12-04 00:00:00

abstract：:Previous studies have revealed inconsistent correlations between fungal diversity and plant/soil properties from local to global scales. Here, we investigated the internal relationships between soil fungal diversity and plant/soil properties on the Loess Plateau following vegetation restoration, using Illumina sequenc...

journal_title：Frontiers in microbiology

authors： Yang Y,Dou Y,Huang Y,An S

更新日期：2017-11-07 00:00:00

abstract：:Ticks transmit a variety of human pathogens, including Borrelia burgdorferi, the etiological agent of Lyme disease. Multiple pathogens that are transmitted simultaneously, termed "coinfections," are of increasing importance and can affect disease outcome in a host. Arthropod immunity is central to pathogen acquisition...

journal_title：Frontiers in microbiology

authors： Oliva Chávez AS,Shaw DK,Munderloh UG,Pedra JH

更新日期：2017-02-14 00:00:00

abstract：:Capsaicin (CAP) reduces body weight mainly through activation of transient receptor potential vanilloid 1 (TRPV1) cation channel. However, recent evidence indicates that the gut microbiota influences many physiological processes in host and might provoke obesity. This study determined whether the anti-obesity effect o...

journal_title：Frontiers in microbiology

authors： Shen W,Shen M,Zhao X,Zhu H,Yang Y,Lu S,Tan Y,Li G,Li M,Wang J,Hu F,Le S

更新日期：2017-02-23 00:00:00

abstract：:Vachellia karroo (formerly Acacia karroo) is a wide-spread legume species indigenous to southern Africa. Little is known regarding the identity or diversity of rhizobia that associate with this plant in its native range in South Africa. The aims of this study were therefore: (i) to gather a collection of rhizobia asso...

journal_title：Frontiers in microbiology

authors： Beukes CW,Boshoff FS,Phalane FL,Hassen AI,le Roux MM,Stȩpkowski T,Venter SN,Steenkamp ET

更新日期：2019-06-04 00:00:00

abstract：:Helminth-derived molecules have the ability to modulate the host immune system. Our previous study identified a tetradecapeptide derived from Trichinella spiralis paramyosin (Ts-pmy) that could bind to human complement component C9 to inhibit its polymerization, making the peptide a candidate therapeutic agent for com...

journal_title：Frontiers in microbiology

authors： Chen Y,Shao S,Huang J,Gu Y,Cheng Y,Zhu X

更新日期：2020-12-23 00:00:00

abstract：:The bacterial catabolism of aromatic compounds has considerable promise to convert lignin depolymerization products to commercial chemicals. Alkylphenols are a key class of depolymerization products whose catabolism is not well-elucidated. We isolated Rhodococcus rhodochrous EP4 on 4-ethylphenol and applied genomic an...

journal_title：Frontiers in microbiology

authors： Levy-Booth DJ,Fetherolf MM,Stewart GR,Liu J,Eltis LD,Mohn WW

更新日期：2019-08-20 00:00:00

abstract：:The impact of subacute rumen acidosis (SARA) on the rumen bacterial community has been frequently studied in in vivo trials. Here we investigated whether these alterations can be mirrored by using the rumen simulation technique (RUSITEC) as an in vitro model for this disease. We hypothezised that the bacterial communi...

journal_title：Frontiers in microbiology

authors： Brede M,Orton T,Pinior B,Roch FF,Dzieciol M,Zwirzitz B,Wagner M,Breves G,Wetzels SU

更新日期：2020-08-07 00:00:00

abstract：:This study examined fungal diversity and composition in conventional (CM) and desert farming (DE) systems in Oman. Fungal diversity in the rhizosphere of tomato was assessed using 454-pyrosequencing and culture-based techniques. Both techniques produced variable results in terms of fungal diversity, with 25% of the fu...

journal_title：Frontiers in microbiology

authors： Kazerooni EA,Maharachchikumbura SSN,Rethinasamy V,Al-Mahrouqi H,Al-Sadi AM

更新日期：2017-08-02 00:00:00

abstract：:Acidithiobacillus caldus is an extremely acidophilic sulfur-oxidizer with specialized characteristics, such as tolerance to low pH and heavy metal resistance. To gain novel insights into its genetic complexity, we chosen six A. caldus strains for comparative survey. All strains analyzed in this study differ in geograp...

journal_title：Frontiers in microbiology

authors： Zhang X,Liu X,He Q,Dong W,Zhang X,Fan F,Peng D,Huang W,Yin H

更新日期：2016-12-06 00:00:00

abstract：:Much of the mitogenome variation observed in fungal lineages seems driven by mobile genetic elements (MGEs), which have invaded their genomes throughout evolution. The variation in the distribution and nucleotide diversity of these elements appears to be the main distinction between different fungal taxa, making them ...

journal_title：Frontiers in microbiology

authors： Kulik T,Brankovics B,van Diepeningen AD,Bilska K,Żelechowski M,Myszczyński K,Molcan T,Stakheev A,Stenglein S,Beyer M,Pasquali M,Sawicki J,Wyrȩbek J,Baturo-Cieśniewska A

更新日期：2020-05-25 00:00:00

abstract：:An extended multilocus sequence analysis (MLSA) scheme applicable to the Brucella, an expanding genus that includes zoonotic pathogens that severely impact animal and human health across large parts of the globe, was developed. The scheme, which extends a previously described nine locus scheme by examining sequences a...

journal_title：Frontiers in microbiology

authors： Whatmore AM,Koylass MS,Muchowski J,Edwards-Smallbone J,Gopaul KK,Perrett LL

更新日期：2016-12-21 00:00:00

abstract：:Although once thought to be devoid of biology, recent studies have identified salt deposits as oases for life in the hyperarid Atacama Desert. To examine spatial patterns of microbial species and key nutrient sources, we genomically characterized 26 salt crusts from three sites along a fog gradient. The communities ar...

journal_title：Frontiers in microbiology

authors： Finstad KM,Probst AJ,Thomas BC,Andersen GL,Demergasso C,Echeverría A,Amundson RG,Banfield JF

更新日期：2017-07-28 00:00:00

abstract：:Cervical cancer is the third most common cancer worldwide and the fourth leading cause of cancer-associated mortality in women. Accumulating evidence indicates that long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) may play key roles in the carcinogenesis of different cancers; however, little is known about ...

journal_title：Frontiers in microbiology

authors： Wang H,Zhao Y,Chen M,Cui J

更新日期：2017-09-19 00:00:00

abstract：:Bacteria have a remarkable ability to sense environmental changes, swiftly regulating their transcriptional and posttranscriptional machinery as a response. Under conditions that cause growth to slow or stop, bacteria typically stabilize their transcriptomes in what has been shown to be a conserved stress response. In...

journal_title：Frontiers in microbiology

authors： Vargas-Blanco DA,Shell SS

更新日期：2020-09-09 00:00:00

abstract：:Soil dwelling Streptomyces species are faced with large variations in carbon or nitrogen sources, phosphate, oxygen, iron, sulfur, and other nutrients. These drastic changes in key nutrients result in an unbalanced metabolism that have undesirable consequences for growth, cell differentiation, reproduction, and second...

journal_title：Frontiers in microbiology

authors： Martín JF,Liras P

更新日期：2020-01-22 00:00:00

abstract：:Laccase is widely used in several industrial applications and co-culture is a common method for enhancing laccase production in submerged fermentation. In this study, the co-culture of four yeasts with Pleurotus eryngii var. ferulae was found to enhance laccase production. An analysis of sterilization temperatures and...

journal_title：Frontiers in microbiology

authors： Guo C,Zhao L,Wang F,Lu J,Ding Z,Shi G

更新日期：2017-06-16 00:00:00

abstract：:Enterotoxigenic Escherichia coli (ETEC) are opportunistic pathogens that colonize the small intestine, produce enterotoxins and induce diarrhea. Some aquaporins (AQPs), such as AQP3 and AQP8, have been reported to participate in diarrhea by decreasing cellular influx in the gastrointestinal (GI) tract. AQP4 is another...

journal_title：Frontiers in microbiology

authors： Zhang D,Yang L,Su W,Zhao Y,Ma X,Zhou H,Xu B,Zhang K,Ma H

更新日期：2018-01-09 00:00:00