Bi-allelic CCDC47 Variants Cause a Disorder Characterized by Woolly Hair, Liver Dysfunction, Dysmorphic Features, and Global Developmental Delay.

Abstract:

:Ca2+ signaling is vital for various cellular processes including synaptic vesicle exocytosis, muscle contraction, regulation of secretion, gene transcription, and cellular proliferation. The endoplasmic reticulum (ER) is the largest intracellular Ca2+ store, and dysregulation of ER Ca2+ signaling and homeostasis contributes to the pathogenesis of various complex disorders and Mendelian disease traits. We describe four unrelated individuals with a complex multisystem disorder characterized by woolly hair, liver dysfunction, pruritus, dysmorphic features, hypotonia, and global developmental delay. Through whole-exome sequencing and family-based genomics, we identified bi-allelic variants in CCDC47 that encodes the Ca2+-binding ER transmembrane protein CCDC47. CCDC47, also known as calumin, has been shown to bind Ca2+ with low affinity and high capacity. In mice, loss of Ccdc47 leads to embryonic lethality, suggesting that Ccdc47 is essential for early development. Characterization of cells from individuals with predicted likely damaging alleles showed decreased CCDC47 mRNA expression and protein levels. In vitro cellular experiments showed decreased total ER Ca2+ storage, impaired Ca2+ signaling mediated by the IP3R Ca2+ release channel, and reduced ER Ca2+ refilling via store-operated Ca2+ entry. These results, together with the previously described role of CCDC47 in Ca2+ signaling and development, suggest that bi-allelic loss-of-function variants in CCDC47 underlie the pathogenesis of this multisystem disorder.

journal_name

Am J Hum Genet

authors

Morimoto M,Waller-Evans H,Ammous Z,Song X,Strauss KA,Pehlivan D,Gonzaga-Jauregui C,Puffenberger EG,Holst CR,Karaca E,Brigatti KW,Maguire E,Coban-Akdemir ZH,Amagata A,Lau CC,Chepa-Lotrea X,Macnamara E,Tos T,Isikay S,

doi

10.1016/j.ajhg.2018.09.014

subject

Has Abstract

pub_date

2018-11-01 00:00:00

pages

794-807

issue

5

eissn

0002-9297

issn

1537-6605

pii

S0002-9297(18)30352-5

journal_volume

103

pub_type

杂志文章
  • Pyridoxine effects on ornithine ketoacid transaminase activity in fibroblasts from carriers of two forms of gyrate atrophy of the choroid and retina.

    abstract::Gyrate atrophy of the choroid and retina that is due to ornithine ketoacid transaminase (OKT) deficiency is an autosomal recessive disorder. Fibroblasts from heterozygotes for the pyridoxine-responsive variant as well as those for the pyridoxine-nonresponsive variant contain intermediate levels of OKT activity. These ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Shih VE,Mandell R,Berson EL

    更新日期:1988-12-01 00:00:00

  • Chondrodysplasia and abnormal joint development associated with mutations in IMPAD1, encoding the Golgi-resident nucleotide phosphatase, gPAPP.

    abstract::We used whole-exome sequencing to study three individuals with a distinct condition characterized by short stature, chondrodysplasia with brachydactyly, congenital joint dislocations, cleft palate, and facial dysmorphism. Affected individuals carried homozygous missense mutations in IMPAD1, the gene coding for gPAPP, ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2011.04.002

    authors: Vissers LE,Lausch E,Unger S,Campos-Xavier AB,Gilissen C,Rossi A,Del Rosario M,Venselaar H,Knoll U,Nampoothiri S,Nair M,Spranger J,Brunner HG,Bonafé L,Veltman JA,Zabel B,Superti-Furga A

    更新日期:2011-05-13 00:00:00

  • Evidence of linkage with HLA-DR in DRB1*15-negative families with multiple sclerosis.

    abstract::The importance of the HLA-DR locus to multiple sclerosis (MS) susceptibility was assessed in 542 sib pairs with MS and in their families. By genotyping 1,978 individuals for HLA-DRB1 alleles, we confirmed the well-established association of MS with HLA-DRB1*15 (HLA-DRB1*1501 and HLA-DRB5*0101), by the transmission/dis...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/323480

    authors: Ligers A,Dyment DA,Willer CJ,Sadovnick AD,Ebers G,Risch N,Hillert J,Canadian Collaborative Study Groups.

    更新日期:2001-10-01 00:00:00

  • The segregation of C-band polymorphisms on chromosomes 1, 9, and 16.

    abstract::Eleven normal families with at least four children were studied cytogenetically using the C-band technique to identify polymorphisms in the constitutive heterochromatin of chromosomes 1, 9 and 16. Thirteen individuals showed one or more variants in such chromosomes. The analysis of the segregation ratios in the 35 off...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Carnevale A,Ibañez BB,del Castillo V

    更新日期:1976-07-01 00:00:00

  • A likelihood approach to calculating risk support intervals.

    abstract::Genetic risks are usually computed under the assumption that genetic parameters, such as the recombination fraction, are known without error. Uncertainty in the estimates of these parameters must translate into uncertainty regarding the risk. To allow for uncertainties in parameter values, one may employ Bayesian tech...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Leal SM,Ott J

    更新日期:1994-05-01 00:00:00

  • Identification of mutations in the alpha-L-iduronidase gene (IDUA) that cause Hurler and Scheie syndromes.

    abstract::Mucopolysaccharidosis type I (MPS-I) is an autosomal recessive genetic disease caused by a deficiency of the lysosomal glycosidase alpha-L-iduronidase. Hurler (severe), Scheie (mild), and Hurler/Scheie (intermediate) syndromes are clinical subtypes of MPS-I, but it is difficult to distinguish between these subtypes by...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Scott HS,Litjens T,Nelson PV,Thompson PR,Brooks DA,Hopwood JJ,Morris CP

    更新日期:1993-11-01 00:00:00

  • Deletions and point mutations of LRRC50 cause primary ciliary dyskinesia due to dynein arm defects.

    abstract::Genetic defects affecting motility of cilia and flagella cause chronic destructive airway disease, randomization of left-right body asymmetry, and, frequently, male infertility in primary ciliary dyskinesia (PCD). The most frequent defects involve outer and inner dynein arms (ODAs and IDAs) that are large multiprotein...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2009.10.018

    authors: Loges NT,Olbrich H,Becker-Heck A,Häffner K,Heer A,Reinhard C,Schmidts M,Kispert A,Zariwala MA,Leigh MW,Knowles MR,Zentgraf H,Seithe H,Nürnberg G,Nürnberg P,Reinhardt R,Omran H

    更新日期:2009-12-01 00:00:00

  • Analysis of European mtDNAs for recombination.

    abstract::The standard paradigm postulates that the human mitochondrial genome (mtDNA) is strictly maternally inherited and that, consequently, mtDNA lineages are clonal. As a result of mtDNA clonality, phylogenetic and population genetic analyses should therefore be free of the complexities imposed by biparental recombination....

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/316938

    authors: Elson JL,Andrews RM,Chinnery PF,Lightowlers RN,Turnbull DM,Howell N

    更新日期:2001-01-01 00:00:00

  • De Novo Mutations of RERE Cause a Genetic Syndrome with Features that Overlap Those Associated with Proximal 1p36 Deletions.

    abstract::Deletions of chromosome 1p36 affect approximately 1 in 5,000 newborns and are associated with developmental delay, intellectual disability, and defects involving the brain, eye, ear, heart, and kidney. Arginine-glutamic acid dipeptide repeats (RERE) is located in the proximal 1p36 critical region. RERE is a widely-exp...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2016.03.002

    authors: Fregeau B,Kim BJ,Hernández-García A,Jordan VK,Cho MT,Schnur RE,Monaghan KG,Juusola J,Rosenfeld JA,Bhoj E,Zackai EH,Sacharow S,Barañano K,Bosch DGM,de Vries BBA,Lindstrom K,Schroeder A,James P,Kulch P,Lalani SR,van

    更新日期:2016-05-05 00:00:00

  • Mutations in POFUT1, encoding protein O-fucosyltransferase 1, cause generalized Dowling-Degos disease.

    abstract::Dowling-Degos disease (DDD), or reticular pigmented anomaly of the flexures, is a type of rare autosomal-dominant genodermatosis characterized by reticular hyperpigmentation and hypopigmentation of the flexures, such as the neck, axilla, and areas below the breasts and groin, and shows considerable heterogeneity. Loss...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2013.04.022

    authors: Li M,Cheng R,Liang J,Yan H,Zhang H,Yang L,Li C,Jiao Q,Lu Z,He J,Ji J,Shen Z,Li C,Hao F,Yu H,Yao Z

    更新日期:2013-06-06 00:00:00

  • Mismatches in genetic markers in a large family study.

    abstract::The Hawaii Family Study of Cognition provided an opportunity to investigate the frequency and implications of non-agreement, or mismatches, between observed and expected genetic marker phenotypes of husbands, wives, and children. Mismatch data from 68 families in which one or both spouses were known not to be a biolog...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Ashton GC

    更新日期:1980-07-01 00:00:00

  • Genomewide linkage scan identifies a novel susceptibility locus for restless legs syndrome on chromosome 9p.

    abstract::Restless legs syndrome (RLS) is a common neurological disorder that affects 5%-12% of all whites. To genetically dissect this complex disease, we characterized 15 large and extended multiplex pedigrees, consisting of 453 subjects (134 affected with RLS). A familial aggregation analysis was performed, and SAGE FCOR was...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/420772

    authors: Chen S,Ondo WG,Rao S,Li L,Chen Q,Wang Q

    更新日期:2004-05-01 00:00:00

  • NF1 microdeletion syndrome: refined FISH characterization of sporadic and familial deletions with locus-specific probes.

    abstract::Two familial and seven sporadic patients with neurofibromatosis 1-who showed dysmorphism, learning disabilities/mental retardation, and additional signs and carried deletions of the NF1 gene-were investigated by use of a two-step FISH approach to characterize the deletions. With FISH of YAC clones belonging to a 7-Mb ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302709

    authors: Riva P,Corrado L,Natacci F,Castorina P,Wu BL,Schneider GH,Clementi M,Tenconi R,Korf BR,Larizza L

    更新日期:2000-01-01 00:00:00

  • Genetic analysis of innate immunity in Crohn's disease and ulcerative colitis identifies two susceptibility loci harboring CARD9 and IL18RAP.

    abstract::The two main phenotypes of inflammatory bowel disease (IBD)--Crohn's disease (CD) and ulcerative colitis (UC)--are chronic intestinal inflammatory disorders with a complex genetic background. Using a three-stage design, we performed a functional candidate-gene analysis of innate immune pathway in IBD. In phase I, we t...

    journal_title:American journal of human genetics

    pub_type: 杂志文章,多中心研究

    doi:10.1016/j.ajhg.2008.03.016

    authors: Zhernakova A,Festen EM,Franke L,Trynka G,van Diemen CC,Monsuur AJ,Bevova M,Nijmeijer RM,van 't Slot R,Heijmans R,Boezen HM,van Heel DA,van Bodegraven AA,Stokkers PC,Wijmenga C,Crusius JB,Weersma RK

    更新日期:2008-05-01 00:00:00

  • Consistent linkage of the long-QT syndrome to the Harvey ras-1 locus on chromosome 11.

    abstract::The long-QT syndrome (LQT; Ward-Romano syndrome) is a cardiac disorder that is inherited as an autosomal dominant trait. Affected family members suffer from recurrent syncope and sudden death due to ventricular arrhythmias. Recently, we identified a DNA marker on the short arm of chromosome 11 (the Harvey ras-1 locus ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Keating M,Dunn C,Atkinson D,Timothy K,Vincent GM,Leppert M

    更新日期:1991-12-01 00:00:00

  • Using lod-score differences to determine mode of inheritance: a simple, robust method even in the presence of heterogeneity and reduced penetrance.

    abstract::Determining the mode of inheritance is often difficult under the best of circumstances, but when segregation analysis is used, the problems of ambiguous ascertainment procedures, reduced penetrance, heterogeneity, and misdiagnosis make mode-of-inheritance determinations even more unreliable. The mode of inheritance ca...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Greenberg DA,Berger B

    更新日期:1994-10-01 00:00:00

  • Relationship estimation by Markov-process models in a sib-pair linkage study.

    abstract::The results of sib-pair linkage studies may be compromised if a substantial number of putative sib pairs are not actually sib pairs. For classification of pairs in a sib-pair genome scan, I propose multipoint methods that are based on a Markov-process model of allele sharing along the chromosome. These methods can be ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302360

    authors: Olson JM

    更新日期:1999-05-01 00:00:00

  • Linkage analysis of chromosome 17 markers in British and South African families with neurofibromatosis type I.

    abstract::Nine markers from the pericentromeric region of chromosome 17 were typed in 16 British and five South African families with neurofibromatosis type 1 (NF1). The markers--p17H8, pHHH202, and EW204--were linked to NF1 at recombination fractions less than 1%. No evidence of locus heterogeneity was detected. Inspection of ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Mathew CG,Thorpe K,Easton DF,Chin KS,Jadayel D,Ponder M,Moore G,Wallis CE,Slater CP,De Jong G

    更新日期:1989-01-01 00:00:00

  • Haplotype diversity across 100 candidate genes for inflammation, lipid metabolism, and blood pressure regulation in two populations.

    abstract::Recent studies have suggested that a significant fraction of the human genome is contained in blocks of strong linkage disequilibrium, ranging from ~5 to >100 kb in length, and that within these blocks a few common haplotypes may account for >90% of the observed haplotypes. Furthermore, previous studies have suggested...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/382227

    authors: Crawford DC,Carlson CS,Rieder MJ,Carrington DP,Yi Q,Smith JD,Eberle MA,Kruglyak L,Nickerson DA

    更新日期:2004-04-01 00:00:00

  • An ancestral Ashkenazi haplotype at the HMPS/CRAC1 locus on 15q13-q14 is associated with hereditary mixed polyposis syndrome.

    abstract::The putative locus for hereditary mixed polyposis syndrome (HMPS) in a large family of Ashkenazi descent (SM96) was previously reported to map to chromosome sub-bands 6q16-q21. However, new clinical data, together with molecular data from additional family members, have shown 6q linkage to be incorrect. A high-density...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/375144

    authors: Jaeger EE,Woodford-Richens KL,Lockett M,Rowan AJ,Sawyer EJ,Heinimann K,Rozen P,Murday VA,Whitelaw SC,Ginsberg A,Atkin WS,Lynch HT,Southey MC,Debinski H,Eng C,Bodmer WF,Talbot IC,Hodgson SV,Thomas HJ,Tomlinson IP

    更新日期:2003-05-01 00:00:00

  • Autism or atypical autism in maternally but not paternally derived proximal 15q duplication.

    abstract::Duplications of proximal 15q have been found in individuals with autistic disorder (AD) and varying degrees of mental retardation. Often these abnormalities take the form of a supernumerary inverted duplicated chromosome 15, more properly described as an isodicentric chromosome 15, or idic(15). However, intrachromosom...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Cook EH Jr,Lindgren V,Leventhal BL,Courchesne R,Lincoln A,Shulman C,Lord C,Courchesne E

    更新日期:1997-04-01 00:00:00

  • Apolipoprotein E polymorphism influences postprandial retinyl palmitate but not triglyceride concentrations.

    abstract::To quantify the effect of the apolipoprotein (apo) E polymorphism on the magnitude of postprandial lipemia, we have defined its role in determining the response to a single high-fat meal in a large sample of (N = 474) individuals taking part in the biethnic Atherosclerosis Risk in Communities Study. The profile of pos...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Boerwinkle E,Brown S,Sharrett AR,Heiss G,Patsch W

    更新日期:1994-02-01 00:00:00

  • Remapping of the RP15 locus for X-linked cone-rod degeneration to Xp11.4-p21.1, and identification of a de novo insertion in the RPGR exon ORF15.

    abstract::X-linked forms of retinitis pigmentosa (XLRP) are among the most severe, because of their early onset, often leading to significant vision loss before the 4th decade. Previously, the RP15 locus was assigned to Xp22, by linkage analysis of a single pedigree with "X-linked dominant cone-rod degeneration." After clinical...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/303091

    authors: Mears AJ,Hiriyanna S,Vervoort R,Yashar B,Gieser L,Fahrner S,Daiger SP,Heckenlively JR,Sieving PA,Wright AF,Swaroop A

    更新日期:2000-10-01 00:00:00

  • GRIK5 Genetically Regulated Expression Associated with Eye and Vascular Phenomes: Discovery through Iteration among Biobanks, Electronic Health Records, and Zebrafish.

    abstract::Although the use of model systems for studying the mechanism of mutations that have a large effect is common, we highlight here the ways that zebrafish-model-system studies of a gene, GRIK5, that contributes to the polygenic liability to develop eye diseases have helped to illuminate a mechanism that implicates vascul...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2019.01.017

    authors: Unlu G,Gamazon ER,Qi X,Levic DS,Bastarache L,Denny JC,Roden DM,Mayzus I,Breyer M,Zhong X,Konkashbaev AI,Rzhetsky A,Knapik EW,Cox NJ

    更新日期:2019-03-07 00:00:00

  • Allele-Specific QTL Fine Mapping with PLASMA.

    abstract::Although quantitative trait locus (QTL) associations have been identified for many molecular traits such as gene expression, it remains challenging to distinguish the causal nucleotide from nearby variants. In addition to traditional QTLs by association, allele-specific (AS) QTLs are a powerful measure of cis-regulati...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2019.12.011

    authors: Wang AT,Shetty A,O'Connor E,Bell C,Pomerantz MM,Freedman ML,Gusev A

    更新日期:2020-02-06 00:00:00

  • Abdominal aortic aneurysm is associated with a variant in low-density lipoprotein receptor-related protein 1.

    abstract::Abdominal aortic aneurysm (AAA) is a common cause of morbidity and mortality and has a significant heritability. We carried out a genome-wide association discovery study of 1866 patients with AAA and 5435 controls and replication of promising signals (lead SNP with a p value < 1 × 10(-5)) in 2871 additional cases and ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2011.10.002

    authors: Bown MJ,Jones GT,Harrison SC,Wright BJ,Bumpstead S,Baas AF,Gretarsdottir S,Badger SA,Bradley DT,Burnand K,Child AH,Clough RE,Cockerill G,Hafez H,Scott DJ,Futers S,Johnson A,Sohrabi S,Smith A,Thompson MM,van Bockxm

    更新日期:2011-11-11 00:00:00

  • Genotype/Phenotype analysis of a photoreceptor-specific ATP-binding cassette transporter gene, ABCR, in Stargardt disease.

    abstract::Mutation scanning and direct DNA sequencing of all 50 exons of ABCR were completed for 150 families segregating recessive Stargardt disease (STGD1). ABCR variations were identified in 173 (57%) disease chromosomes, the majority of which represent missense amino acid substitutions. These ABCR variants were not found in...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302251

    authors: Lewis RA,Shroyer NF,Singh N,Allikmets R,Hutchinson A,Li Y,Lupski JR,Leppert M,Dean M

    更新日期:1999-02-01 00:00:00

  • Hypokalemic periodic paralysis and the dihydropyridine receptor (CACNL1A3): genotype/phenotype correlations for two predominant mutations and evidence for the absence of a founder effect in 16 caucasian families.

    abstract::Hypokalemic periodic paralysis (hypoPP) is an autosomal dominant disorder belonging to a group of muscle diseases involving the abnormal function of ion channels. This group of muscle diseases also comprises hyperkalemic periodic paralysis and paramyotonia congenita, both sodium-channel diseases, and myotonia congenit...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Elbaz A,Vale-Santos J,Jurkat-Rott K,Lapie P,Ophoff RA,Bady B,Links TP,Piussan C,Vila A,Monnier N

    更新日期:1995-02-01 00:00:00

  • Evidence for a susceptibility gene for autism on chromosome 2 and for genetic heterogeneity.

    abstract::Although there is considerable evidence for a strong genetic component to idiopathic autism, several genomewide screens for susceptibility genes have been performed with limited concordance of linked loci, reflecting either numerous genes of weak effect and/or sample heterogeneity. Because decreasing sample heterogene...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/320588

    authors: Buxbaum JD,Silverman JM,Smith CJ,Kilifarski M,Reichert J,Hollander E,Lawlor BA,Fitzgerald M,Greenberg DA,Davis KL

    更新日期:2001-06-01 00:00:00

  • Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.

    abstract::Sudden cardiac death is responsible for half of all deaths from cardiovascular disease. The analysis of the electrophysiological substrate for arrhythmias is crucial for optimal risk stratification. A prolonged T-peak-to-Tend (Tpe) interval on the electrocardiogram is an independent predictor of increased arrhythmic r...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2020.04.009

    authors: Ramírez J,van Duijvenboden S,Young WJ,Orini M,Lambiase PD,Munroe PB,Tinker A

    更新日期:2020-06-04 00:00:00