Genotype/Phenotype analysis of a photoreceptor-specific ATP-binding cassette transporter gene, ABCR, in Stargardt disease.

Abstract:

:Mutation scanning and direct DNA sequencing of all 50 exons of ABCR were completed for 150 families segregating recessive Stargardt disease (STGD1). ABCR variations were identified in 173 (57%) disease chromosomes, the majority of which represent missense amino acid substitutions. These ABCR variants were not found in 220 unaffected control individuals (440 chromosomes) but do cosegregate with the disease in these families with STGD1, and many occur in conserved functional domains. Missense amino acid substitutions located in the amino terminal one-third of the protein appear to be associated with earlier onset of the disease and may represent misfolding alleles. The two most common mutant alleles, G1961E and A1038V, each identified in 16 of 173 disease chromosomes, composed 18.5% of mutations identified. G1961E has been associated previously, at a statistically significant level in the heterozygous state, with age-related macular degeneration (AMD). Clinical evaluation of these 150 families with STGD1 revealed a high frequency of AMD in first- and second-degree relatives. These findings support the hypothesis that compound heterozygous ABCR mutations are responsible for STGD1 and that some heterozygous ABCR mutations may enhance susceptibility to AMD.

journal_name

Am J Hum Genet

authors

Lewis RA,Shroyer NF,Singh N,Allikmets R,Hutchinson A,Li Y,Lupski JR,Leppert M,Dean M

doi

10.1086/302251

subject

Has Abstract

pub_date

1999-02-01 00:00:00

pages

422-34

issue

2

eissn

0002-9297

issn

1537-6605

pii

S0002-9297(07)61748-0

journal_volume

64

pub_type

杂志文章
  • Analysis in a large hyperkalemic periodic paralysis pedigree supports tight linkage to a sodium channel locus.

    abstract::Hyperkalemic periodic paralysis (HYPP) is an autosomal dominant muscle disease with electrophysiological abnormalities suggesting a defect in a voltage-gated sodium channel (NaCh) gene. A human NaCh gene was recently shown to cosegregate with the disease allele in a family with HYPP. Using an independent clone, we hav...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Ptacek LJ,Tyler F,Trimmer JS,Agnew WS,Leppert M

    更新日期:1991-08-01 00:00:00

  • Constitutive activation of the calcium sensor STIM1 causes tubular-aggregate myopathy.

    abstract::Tubular aggregates are regular arrays of membrane tubules accumulating in muscle with age. They are found as secondary features in several muscle disorders, including alcohol- and drug-induced myopathies, exercise-induced cramps, and inherited myasthenia, but also exist as a pure genetic form characterized by slowly p...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2012.12.007

    authors: Böhm J,Chevessier F,Maues De Paula A,Koch C,Attarian S,Feger C,Hantaï D,Laforêt P,Ghorab K,Vallat JM,Fardeau M,Figarella-Branger D,Pouget J,Romero NB,Koch M,Ebel C,Levy N,Krahn M,Eymard B,Bartoli M,Laporte J

    更新日期:2013-02-07 00:00:00

  • c-Ha-ras-1 oncogene lies between beta-globin and insulin loci on human chromosome 11p.

    abstract::DNA sequence polymorphisms have been used to determine the linear order and recombinational distances separating the Harvey ras 1 oncogene (c-Ha-ras-1), beta-globin, insulin, and parathyroid hormone genes on the short arm of human chromosome 11. Our results indicate that c-Ha-ras-1 is closely linked to both the beta-g...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Fearon ER,Antonarakis SE,Meyers DA,Levine MA

    更新日期:1984-03-01 00:00:00

  • Disentangling selection on genetically correlated polygenic traits via whole-genome genealogies.

    abstract::We present a full-likelihood method to infer polygenic adaptation from DNA sequence variation and GWAS summary statistics to quantify recent transient directional selection acting on a complex trait. Through simulations of polygenic trait architecture evolution and GWASs, we show the method substantially improves powe...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2020.12.005

    authors: Stern AJ,Speidel L,Zaitlen NA,Nielsen R

    更新日期:2021-01-08 00:00:00

  • Genetic polymorphism of human serum ribonuclease I (RNase I).

    abstract::One of the human urinary ribonucleases (RNases) was isolated and purified to homogeneity (SDS-PAGE) by means of a series of column chromatographies. The enzyme, designated RNase 1, is a glycoprotein with a molecular weight of approximately 16,000. Rabbit antibody to the purified RNase 1 reacted with human urine and se...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Yasuda T,Sato W,Mizuta K,Kishi K

    更新日期:1988-04-01 00:00:00

  • The gene for Treacher Collins syndrome maps to the long arm of chromosome 5.

    abstract::Treacher Collins syndrome (TCS) is an autosomal dominant disorder of craniofacial development, the features of which include conductive hearing loss and cleft palate. We have studied 12 unrelated TCS families with multiple affected individuals for linkage to five chromosome 5 markers. There is strong evidence demonstr...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Dixon MJ,Read AP,Donnai D,Colley A,Dixon J,Williamson R

    更新日期:1991-07-01 00:00:00

  • Exome sequencing identifies autosomal-dominant SRP72 mutations associated with familial aplasia and myelodysplasia.

    abstract::Aplastic anemia (AA) and myelodysplasia (MDS) are forms of bone marrow failure that are often part of the same progressive underlying disorder. While most cases are simplex and idiopathic, some show a clear pattern of inheritance; therefore, elucidating the underlying genetic cause could lead to a greater understandin...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2012.03.020

    authors: Kirwan M,Walne AJ,Plagnol V,Velangi M,Ho A,Hossain U,Vulliamy T,Dokal I

    更新日期:2012-05-04 00:00:00

  • Mutation in the human homeobox gene NKX5-3 causes an oculo-auricular syndrome.

    abstract::Several dysmorphic syndromes affect the development of both the eye and the ear, but only a few are restricted to the eye and the external ear. We describe a developmental defect affecting the eye and the external ear in three members of a consanguineous family. This syndrome is characterized by ophthalmic anomalies (...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2008.03.007

    authors: Schorderet DF,Nichini O,Boisset G,Polok B,Tiab L,Mayeur H,Raji B,de la Houssaye G,Abitbol MM,Munier FL

    更新日期:2008-05-01 00:00:00

  • Allan-Herndon-Dudley syndrome and the monocarboxylate transporter 8 (MCT8) gene.

    abstract::Allan-Herndon-Dudley syndrome was among the first of the X-linked mental retardation syndromes to be described (in 1944) and among the first to be regionally mapped on the X chromosome (in 1990). Six large families with the syndrome have been identified, and linkage studies have placed the gene locus in Xq13.2. Mutati...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/431313

    authors: Schwartz CE,May MM,Carpenter NJ,Rogers RC,Martin J,Bialer MG,Ward J,Sanabria J,Marsa S,Lewis JA,Echeverri R,Lubs HA,Voeller K,Simensen RJ,Stevenson RE

    更新日期:2005-07-01 00:00:00

  • Missense mutations in the copper transporter gene ATP7A cause X-linked distal hereditary motor neuropathy.

    abstract::Distal hereditary motor neuropathies comprise a clinically and genetically heterogeneous group of disorders. We recently mapped an X-linked form of this condition to chromosome Xq13.1-q21 in two large unrelated families. The region of genetic linkage included ATP7A, which encodes a copper-transporting P-type ATPase mu...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2010.01.027

    authors: Kennerson ML,Nicholson GA,Kaler SG,Kowalski B,Mercer JF,Tang J,Llanos RM,Chu S,Takata RI,Speck-Martins CE,Baets J,Almeida-Souza L,Fischer D,Timmerman V,Taylor PE,Scherer SS,Ferguson TA,Bird TD,De Jonghe P,Feely SM,

    更新日期:2010-03-12 00:00:00

  • Hereditary mucoepithelial dysplasia: a disease apparently of desmosome and gap junction formation.

    abstract::A previously unrecognized autosomal dominant syndrome affecting oral, nasal, vaginal, urethral, anal, bladder, and conjunctival mucosa with cataracts, follicular keratosis, nonscarring alopecia, and terminal lung disease is described in a four-generation kindred of German extraction. Severe photophobia, tearing, and n...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Witkop CJ Jr,White JG,King RA,Dahl MV,Young WG,Sauk JJ Jr

    更新日期:1979-07-01 00:00:00

  • Tissue-specific reduction in splicing efficiency of IKBKAP due to the major mutation associated with familial dysautonomia.

    abstract::We recently identified a mutation in the I-kappa B kinase associated protein (IKBKAP) gene as the major cause of familial dysautonomia (FD), a recessive sensory and autonomic neuropathy. This alteration, located at base pair 6 of the intron 20 donor splice site, is present on >99.5% of FD chromosomes and results in ti...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/368263

    authors: Cuajungco MP,Leyne M,Mull J,Gill SP,Lu W,Zagzag D,Axelrod FB,Maayan C,Gusella JF,Slaugenhaupt SA

    更新日期:2003-03-01 00:00:00

  • Evidence that mutations in the X-linked DDP gene cause incompletely penetrant and variable skewed X inactivation.

    abstract::X chromosome inactivation results in the random transcriptional silencing of one of the two X chromosomes early in female development. After random inactivation, certain deleterious X-linked mutations can create a selective disadvantage for cells in which the mutation is on the active X chromosome, leading to X inacti...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302286

    authors: Plenge RM,Tranebjaerg L,Jensen PK,Schwartz C,Willard HF

    更新日期:1999-03-01 00:00:00

  • Evidence that methylation of the FMR-I locus is responsible for variable phenotypic expression of the fragile X syndrome.

    abstract::DNA at the FMR-1 locus was analyzed by Southern blot using probe StB12.3 in an unusual fragile X family with six brothers, three of whom are affected with fragile X to varying degrees, two of whom are nonpenetrant carriers, and one of whom is unaffected. Fragile X chromosome studies, detailed physical examinations, an...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: McConkie-Rosell A,Lachiewicz AM,Spiridigliozzi GA,Tarleton J,Schoenwald S,Phelan MC,Goonewardena P,Ding X,Brown WT

    更新日期:1993-10-01 00:00:00

  • Chinese geneticists' views of ethical issues in genetic testing and screening: evidence for eugenics in China.

    abstract::To identify Chinese geneticists' views of ethical issues in genetic testing and screening, a national survey was conducted. Of 402 Chinese geneticists asked to participate, 255 (63%) returned by mail anonymous questionnaires. The majority of respondents thought that genetic testing should be offered in the workplace f...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302020

    authors: Mao X

    更新日期:1998-09-01 00:00:00

  • De novo mutations in NALCN cause a syndrome characterized by congenital contractures of the limbs and face, hypotonia, and developmental delay.

    abstract::Freeman-Sheldon syndrome, or distal arthrogryposis type 2A (DA2A), is an autosomal-dominant condition caused by mutations in MYH3 and characterized by multiple congenital contractures of the face and limbs and normal cognitive development. We identified a subset of five individuals who had been putatively diagnosed wi...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2015.01.003

    authors: Chong JX,McMillin MJ,Shively KM,Beck AE,Marvin CT,Armenteros JR,Buckingham KJ,Nkinsi NT,Boyle EA,Berry MN,Bocian M,Foulds N,Uzielli ML,Haldeman-Englert C,Hennekam RC,Kaplan P,Kline AD,Mercer CL,Nowaczyk MJ,Klein Was

    更新日期:2015-03-05 00:00:00

  • A DNA polymorphism in close physical linkage with the proopiomelanocortin gene.

    abstract::Cellular DNAs from a panel of 20 unrelated individuals were screened for restriction fragment length polymorphisms (RFLP) with a DNA probe containing the first exon of the proopiomelanocortin gene (POMC), which has been assigned to chromosome 2p23-25. Digestion with the restriction endonuclease Sst 1 revealed a high f...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Feder J,Migone N,Chang AC,Cochet M,Cohen SN,Cann H,Cavalli-Sforza LL

    更新日期:1983-11-01 00:00:00

  • Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements.

    abstract::Epigenetic modifications such as DNA methylation play a key role in gene regulation and disease susceptibility. However, little is known about the genome-wide frequency, localization, and function of methylation variation and how it is regulated by genetic and environmental factors. We utilized the Multiple Tissue Hum...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2013.10.004

    authors: Grundberg E,Meduri E,Sandling JK,Hedman AK,Keildson S,Buil A,Busche S,Yuan W,Nisbet J,Sekowska M,Wilk A,Barrett A,Small KS,Ge B,Caron M,Shin SY,Multiple Tissue Human Expression Resource Consortium.,Lathrop M,Dermitzak

    更新日期:2013-11-07 00:00:00

  • Exome-wide Association Study Identifies GREB1L Mutations in Congenital Kidney Malformations.

    abstract::Renal agenesis and hypodysplasia (RHD) are major causes of pediatric chronic kidney disease and are highly genetically heterogeneous. We conducted whole-exome sequencing in 202 case subjects with RHD and identified diagnostic mutations in genes known to be associated with RHD in 7/202 case subjects. In an additional a...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2017.09.018

    authors: Sanna-Cherchi S,Khan K,Westland R,Krithivasan P,Fievet L,Rasouly HM,Ionita-Laza I,Capone VP,Fasel DA,Kiryluk K,Kamalakaran S,Bodria M,Otto EA,Sampson MG,Gillies CE,Vega-Warner V,Vukojevic K,Pediaditakis I,Makar GS,M

    更新日期:2017-11-02 00:00:00

  • A generalized combinatorial approach for detecting gene-by-gene and gene-by-environment interactions with application to nicotine dependence.

    abstract::The determination of gene-by-gene and gene-by-environment interactions has long been one of the greatest challenges in genetics. The traditional methods are typically inadequate because of the problem referred to as the "curse of dimensionality." Recent combinatorial approaches, such as the multifactor dimensionality ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/518312

    authors: Lou XY,Chen GB,Yan L,Ma JZ,Zhu J,Elston RC,Li MD

    更新日期:2007-06-01 00:00:00

  • Genetic disorders in children and young adults: a population study.

    abstract::The data base of an ongoing population-based registry with multiple sources of ascertainment was used to estimate the present population load from genetic disease in more than 1 million consecutive live births. It was found that, before approximately age 25 years, greater than or equal to 53/1,000 live-born individual...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Baird PA,Anderson TW,Newcombe HB,Lowry RB

    更新日期:1988-05-01 00:00:00

  • DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis.

    abstract::Epigenetic modifications, including DNA methylation, represent a potential mechanism for environmental impacts on human disease. Maternal smoking in pregnancy remains an important public health problem that impacts child health in a myriad of ways and has potential lifelong consequences. The mechanisms are largely unk...

    journal_title:American journal of human genetics

    pub_type: 杂志文章,meta分析

    doi:10.1016/j.ajhg.2016.02.019

    authors: Joubert BR,Felix JF,Yousefi P,Bakulski KM,Just AC,Breton C,Reese SE,Markunas CA,Richmond RC,Xu CJ,Küpers LK,Oh SS,Hoyo C,Gruzieva O,Söderhäll C,Salas LA,Baïz N,Zhang H,Lepeule J,Ruiz C,Ligthart S,Wang T,Taylor

    更新日期:2016-04-07 00:00:00

  • A subset-based approach improves power and interpretation for the combined analysis of genetic association studies of heterogeneous traits.

    abstract::Pooling genome-wide association studies (GWASs) increases power but also poses methodological challenges because studies are often heterogeneous. For example, combining GWASs of related but distinct traits can provide promising directions for the discovery of loci with small but common pleiotropic effects. Classical a...

    journal_title:American journal of human genetics

    pub_type: 杂志文章,meta分析

    doi:10.1016/j.ajhg.2012.03.015

    authors: Bhattacharjee S,Rajaraman P,Jacobs KB,Wheeler WA,Melin BS,Hartge P,GliomaScan Consortium.,Yeager M,Chung CC,Chanock SJ,Chatterjee N

    更新日期:2012-05-04 00:00:00

  • Genetic linkage of hyper-IgE syndrome to chromosome 4.

    abstract::The hyper-IgE syndrome (HIES) is a rare primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and highly elevated levels of serum IgE. HIES is now recognized as a multisystem disorder, with nonimmunologic abnormalities of the dentition, bones, and connective tissue. HIES can be transmitted as ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302547

    authors: Grimbacher B,Schäffer AA,Holland SM,Davis J,Gallin JI,Malech HL,Atkinson TP,Belohradsky BH,Buckley RH,Cossu F,Español T,Garty BZ,Matamoros N,Myers LA,Nelson RP,Ochs HD,Renner ED,Wellinghausen N,Puck JM

    更新日期:1999-09-01 00:00:00

  • Intragenic inversion of mtDNA: a new type of pathogenic mutation in a patient with mitochondrial myopathy.

    abstract::We report an unusual molecular defect in the mitochondrially encoded ND1 subunit of NADH ubiquinone oxidoreductase (complex I) in a patient with mitochondrial myopathy and isolated complex I deficiency. The mutation is an inversion of seven nucleotides within the ND1 gene, which maintains the reading frame. The invers...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302927

    authors: Musumeci O,Andreu AL,Shanske S,Bresolin N,Comi GP,Rothstein R,Schon EA,DiMauro S

    更新日期:2000-06-01 00:00:00

  • The duty to recontact: attitudes of genetics service providers.

    abstract::The term "duty to recontact" refers to the possible ethical and/or legal obligation of genetics service providers (GSPs) to recontact former patients about advances in research that might be relevant to them. Although currently this practice is not part of standard care, some argue that such an obligation may be estab...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302293

    authors: Fitzpatrick JL,Hahn C,Costa T,Huggins MJ

    更新日期:1999-03-01 00:00:00

  • Study of two cases of ring 13 chromosome using high-resolution banding.

    abstract::The chromosomes of two patients with ring 13 (r13) were studied using high-resolution RBG banding of prometaphase cells. The rings of the two patients differ slightly in breakpoints. Cell with multiple single, double-sized rings, quadruple-sized rings, rod- and ring-shaped fragments, and fragments showing varied state...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Jones IM,Palmer CG,Weaver DD,Hodes ME

    更新日期:1981-03-01 00:00:00

  • Genetic analysis of plasma sitosterol, apoprotein B, and lipoproteins in a large Amish pedigree with sitosterolemia.

    abstract::We previously reported the finding of phytosterolemia, xanthomatosis, and hyperapobetalipoproteinemia (hyperapoB) in five siblings in a large Amish pedigree ascertained through a 13-year-old boy who died suddenly from advanced coronary atherosclerosis. Here, we present further analyses of the plasma levels of the plan...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Beaty TH,Kwiterovich PO Jr,Khoury MJ,White S,Bachorik PS,Smith HH,Teng B,Sniderman A

    更新日期:1986-04-01 00:00:00

  • Origin of the mutations in the parkin gene in Europe: exon rearrangements are independent recurrent events, whereas point mutations may result from Founder effects.

    abstract::A wide variety of mutations in the parkin gene, including exon deletions and duplications, as well as point mutations, result in autosomal recessive early-onset parkinsonism. Interestingly, several of these anomalies were found repeatedly in unrelated patients and may therefore result from recurrent, de novo mutationa...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/318791

    authors: Periquet M,Lücking C,Vaughan J,Bonifati V,Dürr A,De Michele G,Horstink M,Farrer M,Illarioshkin SN,Pollak P,Borg M,Brefel-Courbon C,Denefle P,Meco G,Gasser T,Breteler MM,Wood N,Agid Y,Brice A,French Parkinson's Disea

    更新日期:2001-03-01 00:00:00

  • Mucopolysaccharide accumulation in cultured skin fibroblasts derived from patients with mucolipidosis IV.

    abstract::Increased concentrations of total sulfated mucopolysaccharides (MPS), threefold, and hyaluronic acid (HA), 10-fold, were found in ML IV fibroblast extracts when compared to normal controls. Such accumulations altered the distribution of MPS:HA comprised 70% of total MPS in ML IV but only 30% in control cells. Intracel...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Bach G,Ziegler M,Kohn G,Cohen MM

    更新日期:1977-11-01 00:00:00