An appropriate bounded invariant region for a bistable reaction-diffusion model of the caspase-3/8 feedback loop.

abstract：:In phylogenetics, a common strategy used to construct an evolutionary tree for a set of species [Formula: see text] is to search in the space of all such trees for one that optimizes some given score function (such as the minimum evolution, parsimony or likelihood score). As this can be computationally intensive, it w...

journal_title：Bulletin of mathematical biology

authors： Bastkowski S,Moulton V,Spillner A,Wu T

更新日期：2015-01-01 00:00:00

abstract：:In order to understand the role of space in ecological communities where each species produces a certain type of resource and has varying abilities to exploit the resources produced by its own species and by the other species, we carry out a comparative study of an interacting particle system and its mean-field approx...

journal_title：Bulletin of mathematical biology

authors： Kang Y,Lanchier N

更新日期：2012-01-01 00:00:00

abstract：:Bacterial quorum sensing (QS) is a form of intercellular communication that relies on the production and detection of diffusive signaling molecules called autoinducers. Such a mechanism allows the bacteria to track their cell density in order to regulate group behavior, such as biofilm formation and bioluminescence. I...

journal_title：Bulletin of mathematical biology

authors： Fan G,Bressloff PC

更新日期：2019-05-01 00:00:00

abstract：:We address the observation that, in some cases, patients infected with the hepatitis C virus (HCV) are cleared of HCV when super-infected with the hepatitis A virus (HAV). We hypothesise that this phenomenon can be explained by the competitive exclusion principle, including the action of the immune system, and show th...

journal_title：Bulletin of mathematical biology

authors： Amaku M,Coutinho FA,Chaib E,Massad E

更新日期：2013-01-01 00:00:00

abstract：:The advances in genetics and biochemistry that have taken place over the last 10 years led to significant advances in experimental and clinical immunology. In turn, this has led to the development of new mathematical models to investigate qualitatively and quantitatively various open questions in immunology. In this s...

journal_title：Bulletin of mathematical biology

authors： Eftimie R,Gillard JJ,Cantrell DA

更新日期：2016-10-01 00:00:00

abstract：:A stochastic evolutionary dynamics of two strategies given by 2x 2 matrix games is studied in finite populations. We focus on stochastic properties of fixation: how a strategy represented by a single individual wins over the entire population. The process is discussed in the framework of a random walk with site depend...

journal_title：Bulletin of mathematical biology

authors： Antal T,Scheuring I

更新日期：2006-11-01 00:00:00

abstract：:In this paper, we present a model that explains the prepatterning of lymphatic vessel morphology in collagen gels. This model is derived using the theory of two phase rubber material due to Flory and coworkers and it consists of two coupled fourth order partial differential equations describing the evolution of the co...

journal_title：Bulletin of mathematical biology

authors： Roose T,Fowler AC

更新日期：2008-08-01 00:00:00

abstract：:Understanding how ecosystems evolve and how they respond to external perturbations is critical if we are to predict the effects of human intervention. A particular class of ecosystems whose dynamics are poorly understood are those in which the species are related via cross-feeding. In these ecosystems the metabolic ou...

journal_title：Bulletin of mathematical biology

authors： Lundh T,Gerlee P

更新日期：2013-05-01 00:00:00

abstract：:This study is concerned with reconciling theoretical modelling of the fluid flow in the airway surface liquid with experimental visualisation of tracer transport in human airway epithelial cultures. The airways are covered by a dense mat of cilia of length approximately 6 microm beating in a watery periciliary liquid ...

journal_title：Bulletin of mathematical biology

authors： Smith DJ,Gaffney EA,Blake JR

更新日期：2007-04-01 00:00:00

abstract：:The mammalian kidney consumes a large amount of energy to support the reabsorptive work it needs to excrete metabolic wastes and to maintain homeostasis. Part of that energy is supplied via the metabolism of glucose. To gain insights into the transport and metabolic processes in the kidney, we have developed a detaile...

journal_title：Bulletin of mathematical biology

authors： Chen Y,Fry BC,Layton AT

更新日期：2016-06-01 00:00:00

abstract：:A model of embryo energetics was fitted to data from the literature for species as different as snails and mammals. The model is based on assumptions about energy uptake, storage and utilization. It describes the animal by two state variables: volume and energy storage. Embryo weight is taken to be proportional to vol...

journal_title：Bulletin of mathematical biology

authors： Zonneveld C,Kooijman SA

更新日期：1993-05-01 00:00:00

abstract：:Dispersal heterogeneity is increasingly being observed in ecological populations and has long been suspected as an explanation for observations of non-Gaussian dispersal. Recent empirical and theoretical studies have begun to confirm this. Using an integro-difference model, we allow an individual's diffusivity to be d...

journal_title：Bulletin of mathematical biology

authors： Stover JP,Kendall BE,Nisbet RM

更新日期：2014-11-01 00:00:00

abstract：:The Shapley value, a solution concept from cooperative game theory, has recently been considered for both unrooted and rooted phylogenetic trees. Here, we focus on the Shapley value of unrooted trees and first revisit the so-called split counts of a phylogenetic tree and the Shapley transformation matrix that allows f...

journal_title：Bulletin of mathematical biology

authors： Wicke K,Fischer M

更新日期：2019-02-01 00:00:00

abstract：:In this paper, we use multiple scale homogenisation to derive a set of averaged macroscale equations that describe the movement of nutrients in partially saturated soil that contains growing potato tubers. The soil is modelled as a poroelastic material, which is deformed by the growth of the tubers, where the growth o...

journal_title：Bulletin of mathematical biology

authors： Duncan SJ,Daly KR,McKay Fletcher DM,Ruiz S,Sweeney P,Roose T

更新日期：2019-10-01 00:00:00

abstract：:Fluorescence recovery after photobleaching (FRAP) is used to obtain quantitative information about molecular diffusion and binding kinetics at both cell and tissue levels of organization. FRAP models have been proposed to estimate the diffusion coefficients and binding kinetic parameters of species for a variety of bi...

journal_title：Bulletin of mathematical biology

authors： Lin L,Othmer HG

更新日期：2017-03-01 00:00:00

abstract：:Analysis schemes for the classification of synergism and antagonism for mixed agents operate on the discrepancies between observed and calculated results. As such they cannot be confirmed by experiments and therefore have to be tested in terms of mathematical and logical self-consistency. The concept of independent ac...

journal_title：Bulletin of mathematical biology

authors： Lam GK

更新日期：1994-09-01 00:00:00

abstract：:It has been postulated that fibroblast growth factor (FGF) treatment of cultured limb bud mesenchyme cells reinforces the lateral inhibitory effect, but the cells also show accelerated pattern appearance. In the present study, we analyze how a small change in a specific parameter affects the speed of pattern appearanc...

journal_title：Bulletin of mathematical biology

authors： Miura T,Maini PK

更新日期：2004-07-01 00:00:00

abstract：:In this paper, a simple semi-discrete (ticks' feeding is assumed to occur only during the summers of each year) model for tick population dynamics is presented. Conditions for existence, uniqueness, and stability of a positive equilibrium are found; the system is then studied numerically using parameter estimates cali...

journal_title：Bulletin of mathematical biology

authors： Ghosh M,Pugliese A

更新日期：2004-11-01 00:00:00

abstract：:Nosocomial outbreaks of bacteria are well documented. Based on these incidents, and the heavy usage of antibiotics in hospitals, it has been assumed that antibiotic resistance evolves in hospital environments. To test this assumption, we studied resistance phenotypes of bacteria collected from patient isolates at a co...

journal_title：Bulletin of mathematical biology

authors： Seigal A,Mira P,Sturmfels B,Barlow M

更新日期：2017-01-01 00:00:00

abstract：:Whilst the human body expends energy constantly, the human diet consists of a mix of carbohydrates and fats delivered in a discontinuous manner. To deal with this sporadic supply of energy, there are transport, storage and utilisation mechanisms, for both carbohydrates and fats, around all tissues of the body. Insulin...

journal_title：Bulletin of mathematical biology

authors： Pearson T,Wattis JA,King JR,MacDonald IA,Mazzatti DJ

更新日期：2016-06-01 00:00:00

abstract：:Bistability and multistationarity are properties of reaction networks linked to switch-like responses and connected to cell memory and cell decision making. Determining whether and when a network exhibits bistability is a hard and open mathematical problem. One successful strategy consists of analyzing small networks ...

journal_title：Bulletin of mathematical biology

authors： Feliu E,Helmer M

更新日期：2019-04-01 00:00:00

abstract：:The apparent synchronisation of spatially discrete populations is a well documented phenomenon. However, it is not clear what the governing mechanisms are for this synchrony, and whether they are robust over a range of environmental conditions and patch specific population dynamic behaviours. In this paper, we explore...

journal_title：Bulletin of mathematical biology

authors： Hillary RM,Bees MA

更新日期：2004-11-01 00:00:00

abstract：:We explore the dynamics of invasive weeds by partial differential equation (PDE) modelling and applying dynamical system and phase portrait techniques. We begin by applying the method of characteristics to a preexisting PDE model of the spreading of T. fluminensis, an invasive weed which has been responsible for nativ...

journal_title：Bulletin of mathematical biology

authors： Ramaj T

更新日期：2021-01-07 00:00:00

abstract：:This study investigates fluid flow and elastic deformation in tissues that are drained by the primary lymphatic system. A model is formulated based on the Rossi hypothesis that states that the primary lymphatic valves, which are formed by overlapping endothelial cells around the circumferential lining of lymphatic cap...

journal_title：Bulletin of mathematical biology

authors： Heppell C,Roose T,Richardson G

更新日期：2015-06-01 00:00:00

abstract：:In developmental biology as well as in other biological systems, emerging structure and organization can be captured using time-series data of protein locations. In analyzing this time-dependent data, it is a common challenge not only to determine whether topological features emerge, but also to identify the timing of...

journal_title：Bulletin of mathematical biology

authors： Ciocanel MV,Juenemann R,Dawes AT,McKinley SA

更新日期：2021-01-16 00:00:00

abstract：:It has been recently observed that the dynamical properties of mass action systems arising from many models of biochemical reaction networks can be characterized by considering the corresponding properties of a related generalized mass action system. The correspondence process known as network translation in particula...

journal_title：Bulletin of mathematical biology

authors： Johnston MD

更新日期：2015-06-01 00:00:00

abstract：:Many neurons in mammalian sensory systems exhibit On and Off responses when given appropriate excitatory and inhibitory stimuli. In some instances, such neurons can also exhibit a Mixed response where diminished On and Off responses are both present. In this manuscript, we present a simple single cell model for these ...

journal_title：Bulletin of mathematical biology

authors： Latulippe J,Pernarowski M

更新日期：2009-01-01 00:00:00

abstract：:In this paper we use the Gray code representation of the genetic code C=00, U=10, G=11 and A=01 (C pairs with G, A pairs with U) to generate a sequence of genetic code-based matrices. In connection with these code-based matrices, we use the Hamming distance to generate a sequence of numerical matrices. We then further...

journal_title：Bulletin of mathematical biology

authors： He MX,Petoukhov SV,Ricci PE

更新日期：2004-09-01 00:00:00

abstract：:Modellers of large-scale genome rearrangement events, in which segments of DNA are inverted, moved, swapped, or even inserted or deleted, have found a natural syntax in the language of permutations. Despite this, there has been a wide range of modelling choices, assumptions and interpretations that make navigating the...

journal_title：Bulletin of mathematical biology

authors： Bhatia S,Feijão P,Francis AR

更新日期：2018-12-01 00:00:00

abstract：:A significant conceptual difficulty in the use of switching systems to model regulatory networks is the presence of so-called "black walls," co-dimension 1 regions of phase space with a vector field pointing inward on both sides of the hyperplane. Black walls result from the existence of direct negative self-regulatio...

journal_title：Bulletin of mathematical biology

authors： Fan G,Cummins B,Gedeon T

更新日期：2016-06-01 00:00:00