Sparse generalized eigenvalue problem with application to canonical correlation analysis for integrative analysis of methylation and gene expression data.

abstract：:The data set presented relates a binomial response to ordered levels of an explanatory variable, representing doses of a drug, with data collected at several centers. A study goal is to test independence of the response and the ordinal factor, assuming under the alternative only that the binomial parameter is a monoto...

journal_title：Biometrics

authors： Agresti A,Coull BA

更新日期：1996-09-01 00:00:00

abstract：:We propose a design strategy for single-arm clinical trials in which the goals are to find a dose of an experimental treatment satisfying both safety and efficacy requirements, treat a sufficiently large number of patients to estimate the rates of these events at the selected dose with a given reliability, and stop th...

journal_title：Biometrics

authors： Thall PF,Russell KE

更新日期：1998-03-01 00:00:00

abstract：:In this paper we consider the use of within-subject coefficient of variation (WCV) for assessing the reproducibility or reliability of a measurement. Application to assessing reproducibility of biochemical markers for measuring bone turnover is described and the comparison with intraclass correlation is discussed. Bot...

journal_title：Biometrics

authors： Quan H,Shih WJ

更新日期：1996-12-01 00:00:00

abstract：:Adaptive line transect sampling offers the potential of improved population density estimation efficiency over conventional line transect sampling when populations are spatially clustered. In adaptive sampling, survey effort is increased when areas of high animal density are located, thereby increasing the number of o...

journal_title：Biometrics

authors： Pollard JH,Palka D,Buckland ST

更新日期：2002-12-01 00:00:00

abstract：:A wide variety of similarity indices for comparing two assemblages based on species incidence (i.e., presence/absence) data have been proposed in the literature. These indices are generally based on three simple incidence counts: the number of species shared by two assemblages and the number of species unique to each ...

journal_title：Biometrics

authors： Chao A,Chazdon RL,Colwell RK,Shen TJ

更新日期：2006-06-01 00:00:00

abstract：:In this article, we propose a Bayesian approach to phase I/II dose-finding oncology trials by jointly modeling a binary toxicity outcome and a continuous biomarker expression outcome. We apply our method to a clinical trial of a new gene therapy for bladder cancer patients. In this trial, the biomarker expression indi...

journal_title：Biometrics

authors： Bekele BN,Shen Y

更新日期：2005-06-01 00:00:00

abstract：:This article proposes a two-stage simultaneous confidence procedure for the comparisons of k pairs of population means, without using multiplicity adjustment of more than two populations. The proposed procedure can be broadly applied to parametric or nonparametric models. It is robust and versatile because its derivat...

journal_title：Biometrics

authors： Chen JT

更新日期：2008-06-01 00:00:00

abstract：:Matched case-control designs are commonly used in epidemiologic studies for increased efficiency. These designs have recently been introduced to the setting of modern imaging and genomic studies, which are characterized by high-dimensional covariates. However, appropriate statistical analyses that adjust for the match...

journal_title：Biometrics

authors： Qian J,Payabvash S,Kemmling A,Lev MH,Schwamm LH,Betensky RA

更新日期：2014-03-01 00:00:00

abstract：:Computer simulation has been used to compare four methods for calculating confidence intervals for simple rate ratios estimated from cohort studies. The method proposed by Cornfield (1956. In Proceedings of the Third Berkeley Symposium on Mathematical Statistics and Probability. Vol. IV, 135-148) for interval estimati...

journal_title：Biometrics

authors： Howe GR

更新日期：1983-06-01 00:00:00

abstract：:With increasing frequency, epidemiologic studies are addressing hypotheses regarding gene-environment interaction. In many well-studied candidate genes and for standard dietary and behavioral epidemiologic exposures, there is often substantial prior information available that may be used to analyze current data as wel...

journal_title：Biometrics

authors： Mukherjee B,Ahn J,Gruber SB,Ghosh M,Chatterjee N

更新日期：2010-09-01 00:00:00

abstract：:A Bayesian adaptive design is proposed for dose-finding in phase I/II clinical trials to incorporate the bivariate outcomes, toxicity and efficacy, of a new treatment. Without specifying any parametric functional form for the drug dose-response curve, we jointly model the bivariate binary data to account for the corre...

journal_title：Biometrics

authors： Yin G,Li Y,Ji Y

更新日期：2006-09-01 00:00:00

abstract：:Agricultural screening trials often involve a large number (t) of treatments in a complete block design with limited replication (b = 3 or 4 blocks). The null hypothesis of interest is that of no differences between treatments. For the commonly used analysis of variance (ANOVA) procedure, most texts do not discuss agr...

journal_title：Biometrics

authors： Brownie C,Boos DD

更新日期：1994-06-01 00:00:00

abstract：:We briefly review the major contribution of biometrics to genetics over the last century (population genetic models, familial correlations, segregation analysis, and gene mapping) and current areas of active research and then speculate about what problems will be tackled in the next century. ...

journal_title：Biometrics

authors： Elston RC,Thompson EA

更新日期：2000-09-01 00:00:00

abstract：:Link et al. (2010, Biometrics 66, 178-185) define a general framework for analyzing capture-recapture data with potential misidentifications. In this framework, the observed vector of counts, y, is considered as a linear function of a vector of latent counts, x, such that y=Ax, with x assumed to follow a multinomial d...

journal_title：Biometrics

authors： Schofield MR,Bonner SJ

更新日期：2015-12-01 00:00:00

abstract：:Assuming a model of proportional failure rates, Cox (1972) presents a systematic study of the use of covariates in the analysis of life time. The treatment of tied observations is a particularly troublesome point in both theory and application. It appears that grouping rather than discrete time is the right way to han...

journal_title：Biometrics

authors： Thompson WA Jr

更新日期：1977-09-01 00:00:00

abstract：:Phase I trials to study the pharmacokinetic properties of a new drug generally involve a restricted number of healthy volunteers. Because of the nature of the group involved in such studies, the appropriate distributional assumptions are not always obvious. These model assumptions include the actual distribution but a...

journal_title：Biometrics

authors： Lindsey JK,Byrom WD,Wang J,Jarvis P,Jones B

更新日期：2000-03-01 00:00:00

abstract：:This paper discusses interval estimation of the risk ratio (RR) between a secondary infection, given a primary infection, and the primary infection. Three asymptotic closed-form interval estimators are developed using Wald's test statistic, the logarithmic transformation, and Fieller's theorem. The performance of thes...

journal_title：Biometrics

authors： Lui KJ

更新日期：1998-06-01 00:00:00

abstract：:In Western countries where food supply is satisfactory, consumers organize their diets around a large combination of foods. It is the purpose of this article to examine how recent nonnegative matrix factorization (NMF) techniques can be applied to food consumption data to understand these combinations. Such data are n...

journal_title：Biometrics

authors： Zetlaoui M,Feinberg M,Verger P,Clémençon S

更新日期：2011-12-01 00:00:00

abstract：:We extend the Mantel-Haenszel estimating function to estimate both the intra-cluster pairwise correlation and the main effects for sparse clustered binary data. We propose both a composite likelihood approach and an estimating function approach for the analysis of such data. The proposed estimators are consistent and ...

journal_title：Biometrics

authors： Wang M,Williamson JM

更新日期：2005-12-01 00:00:00

abstract：:Dilution assays to determine solute concentration have found wide use in biomedical research. Many dilution assays return imprecise concentration estimates because they are only done to orders of magnitude. Previous statistical work has focused on how to design efficient experiments that can return more precise estima...

journal_title：Biometrics

authors： Ferguson JM,Miura TA,Miller CR

更新日期：2019-09-01 00:00:00

abstract：:The objective of this paper is to develop statistical methods for estimating current and future numbers of individuals in different stages of the natural history of the human immunodeficiency (AIDS) virus infection and to evaluate the impact of therapeutic advances on these numbers. The approach is to extend the metho...

journal_title：Biometrics

authors： Brookmeyer R,Liao JG

更新日期：1990-12-01 00:00:00

abstract：:In this article, we present an estimation approach for solving nonlinear constrained generalized estimating equations that can be implemented using object-oriented software for nonlinear programming, such as nlminb in Splus or fmincon and lsqnonlin in Matlab. We show how standard estimating equation theory includes th...

journal_title：Biometrics

authors： Contreras M,Ryan LM

更新日期：2000-12-01 00:00:00

abstract：:Andersen et al. (1985, Biometrics 41, 921-932) gave an estimator of the cumulative relative mortality comparing rates of death in an epidemiologic cohort to an external population as a function of time when covariate information is available on all cohort members. We present an analogous estimator when covariate infor...

journal_title：Biometrics

authors： Borgan O,Langholz B

更新日期：1993-06-01 00:00:00

abstract：:A formula is derived for determining the number of observations necessary to test the equality of two survival distributions when concomitant information is incorporated. This formula should be useful in designing clinical trials with a heterogeneous patient population. Schoenfeld (1981, Biometrika 68, 316-319) derive...

journal_title：Biometrics

authors： Schoenfeld DA

更新日期：1983-06-01 00:00:00

abstract：:Image-on-image regression analysis, using images to predict images, is a challenging task, due to (1) the high dimensionality and (2) the complex spatial dependence structures in image predictors and image outcomes. In this work, we propose a novel image-on-image regression model, by extending a spatial Bayesian laten...

journal_title：Biometrics

authors： Guo C,Kang J,Johnson TD

更新日期：2020-12-27 00:00:00

abstract：:In this article, we describe a Bayesian approach to the calibration of a stochastic computer model of chemical kinetics. As with many applications in the biological sciences, the data available to calibrate the model come from different sources. Furthermore, these data appear to provide somewhat conflicting informatio...

journal_title：Biometrics

authors： Henderson DA,Boys RJ,Wilkinson DJ

更新日期：2010-03-01 00:00:00

abstract：:Alterations in DNA methylation have been linked to the development and progression of many diseases. The bisulfite sequencing technique presents methylation profiles at base resolution. Count data on methylated and unmethylated reads provide information on the methylation level at each CpG site. As more bisulfite sequ...

journal_title：Biometrics

authors： Ji T

更新日期：2019-06-01 00:00:00

abstract：:We consider the problem of testing for a difference in the probability of success from matched binary pairs. Starting with three standard inexact tests, the nuisance parameter is first estimated and then the residual dependence is eliminated by maximization, producing what I call an E+M P-value. The E+M P-value based ...

journal_title：Biometrics

authors： Lloyd CJ

更新日期：2008-09-01 00:00:00

abstract：:For the case of repeated measures on Y with mean values linear in a concomitant variable Z in [a, b], a straight-line confidence band over [a, b] is given with width linear in Z. Graphical presentation of such line-segment confidence bands can help emphasize that appropriate inferences are limited to the range of the ...

journal_title：Biometrics

authors： Stewart PW

更新日期：1987-09-01 00:00:00

abstract：:Capture-recapture models are widely used to estimate demographic parameters of marked populations. Recently, this statistical theory has been extended to modeling dispersal of open populations. Multistate models can be used to estimate movement probabilities among subdivided populations if multiple sites are sampled. ...

journal_title：Biometrics

authors： Lindberg MS,Kendall WL,Hines JE,Anderson MG

更新日期：2001-03-01 00:00:00