Fully automated segmentation of a hip joint using the patient-specific optimal thresholding and watershed algorithm.

Abstract:

BACKGROUND AND OBJECTIVE:Automated segmentation with high accuracy and speed is a prerequisite for FEA-based quantitative assessment with a large population. However, hip joint segmentation has remained challenging due to a narrow articular cartilage and thin cortical bone with a marked interindividual variance. To overcome this challenge, this paper proposes a fully automated segmentation method for a hip joint that uses the complementary characteristics between the thresholding technique and the watershed algorithm. METHODS:Using the golden section method and load path algorithm, the proposed method first determines the patient-specific optimal threshold value that enables reliably separating a femur from a pelvis while removing cortical and trabecular bone in the femur at the minimum. This provides regional information on the femur. The watershed algorithm is then used to obtain boundary information on the femur. The proximal femur can be extracted by merging the complementary information on a target image. RESULTS:For eight CT images, compared with the manual segmentation and other segmentation methods, the proposed method offers a high accuracy in terms of the dice overlap coefficient (97.24 ± 0.44%) and average surface distance (0.36 ± 0.07 mm) within a fast timeframe in terms of processing time per slice (1.25 ± 0.27 s). The proposed method also delivers structural behavior which is close to that of the manual segmentation with a small mean of average relative errors of the risk factor (4.99%). CONCLUSION:The segmentation results show that, without the aid of a prerequisite dataset and users' manual intervention, the proposed method can segment a hip joint as fast as the simplified Kang (SK)-based automated segmentation, while maintaining the segmentation accuracy at a similar level of the snake-based semi-automated segmentation.

authors

Kim JJ,Nam J,Jang IG

doi

10.1016/j.cmpb.2017.11.007

subject

Has Abstract

pub_date

2018-02-01 00:00:00

pages

161-171

eissn

0169-2607

issn

1872-7565

pii

S0169-2607(17)30826-X

journal_volume

154

pub_type

杂志文章
  • The evaluation of artificial intelligence systems in medicine.

    abstract::This paper discusses the underlying issues in the evaluation of computer systems which apply artificial intelligence in medicine. Three different levels of evaluation are described: the subjective evaluation of the research contribution of a developmental prototype, the validation of a system's knowledge and performan...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:

    authors: Miller PL

    更新日期:1986-03-01 00:00:00

  • An approach based on wavelet analysis for feature extraction in the a-wave of the electroretinogram.

    abstract::Most biomedical signals are non-stationary. The knowledge of their frequency content and temporal distribution is then useful in a clinical context. The wavelet analysis is appropriate to achieve this task. The present paper uses this method to reveal hidden characteristics and anomalies of the human a-wave, an import...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2011.05.001

    authors: Barraco R,Persano Adorno D,Brai M

    更新日期:2011-12-01 00:00:00

  • BE-DTI': Ensemble framework for drug target interaction prediction using dimensionality reduction and active learning.

    abstract:BACKGROUND AND OBJECTIVE:Drug-target interaction prediction plays an intrinsic role in the drug discovery process. Prediction of novel drugs and targets helps in identifying optimal drug therapies for various stringent diseases. Computational prediction of drug-target interactions can help to identify potential drug-ta...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2018.08.011

    authors: Sharma A,Rani R

    更新日期:2018-10-01 00:00:00

  • Inter-lead correlation analysis for automated detection of cable reversals in 12/16-lead ECG.

    abstract:BACKGROUND AND OBJECTIVE:A crucial factor for proper electrocardiogram (ECG) interpretation is the correct electrode placement in standard 12-lead ECG and extended 16-lead ECG for accurate diagnosis of acute myocardial infarctions. In the context of optimal patient care, we present and evaluate a new method for automat...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2016.06.003

    authors: Jekova I,Krasteva V,Leber R,Schmid R,Twerenbold R,Müller C,Reichlin T,Abächerli R

    更新日期:2016-10-01 00:00:00

  • Using the job-exposure matrix for elaborating job histories.

    abstract::A first software (JHS) for the elaboration of job histories oriented toward risks was designed and results published In an article "A software for the elaboration of Job Histories". This article presents a second software (JES), based on the use of a job-exposure matrix designed for one company. The matrix is essentia...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(92)90056-d

    authors: Martin JM,Mouaddib AI,Bouzid M,Robaux P

    更新日期:1992-09-01 00:00:00

  • A software for the description of workplaces in the PRS system.

    abstract::Workplace description is an operation indispensable for the identification of professional risks and, in fulfillment of that objective, can best be accomplished by listing the constituent tasks associated with each job. This article presents a software in Visual-Basic to be run on a portable micro-computer, which faci...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(97)01777-x

    authors: Martin JM,Dartois E,Bontoux-Frank G,Ricour B,Pariset L,Robaux P,Giampietro V

    更新日期:1997-01-01 00:00:00

  • Deep neural models for extracting entities and relationships in the new RDD corpus relating disabilities and rare diseases.

    abstract:BACKGROUND AND OBJECTIVE:There is a huge amount of rare diseases, many of which have associated important disabilities. It is paramount to know in advance the evolution of the disease in order to limit and prevent the appearance of disabilities and to prepare the patient to manage the future difficulties. Rare disease ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2018.07.007

    authors: Fabregat H,Araujo L,Martinez-Romo J

    更新日期:2018-10-01 00:00:00

  • Molecular modelling analysis of T219A mutant envelope protein revealed novel virulence enhancing factors in Dengue virus isolated from Kerala state, India.

    abstract::Dengue virus (DENV) is an emerging health threat and its envelope glycoprotein E, is involved in the anchoring and fusion mechanisms. Anchoring followed by conformational changes of E-protein are responsible for the fusion and entry of DENV into host. The variation in the conformation of the E-protein due to mutations...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105481

    authors: Kumar YN,Jeyakodi G,Kumar NP,Gunasekaran K,Jambulingam P

    更新日期:2020-10-01 00:00:00

  • A knowledge-based system for real-time quality control and fault diagnosis of multitest analyzers.

    abstract::A PC-based real-time quality control (QC) system for multitest analyzers has been developed as a prototype. The system is built with use of a relational database management system (DBMS). Control values from the various analytical channels are stored and administrated with use of the DBMS. The control values collected...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(91)90042-r

    authors: Groth T,Modèn H

    更新日期:1991-02-01 00:00:00

  • Enhancement of surgical hand gesture recognition using a capsule network for a contactless interface in the operating room.

    abstract:BACKGROUND AND OBJECTIVE:Hand gesture recognition systems in operating rooms (ORs) are crucial for browsing and controlling computer-aided devices, which have been developed to decrease the risk of contamination during surgical procedures. METHODS:We proposed the use of hand gesture recognition to enhance accuracies a...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105385

    authors: Lee AR,Cho Y,Jin S,Kim N

    更新日期:2020-07-01 00:00:00

  • An extension to 3D topological thinning method based on LUT for colon centerline extraction.

    abstract::Topological thinning is a valid but time-consuming method to calculate the centerline of human colon or other hollow organs accurately. An optimized 3D topological thinning method based on Look-up Table (LUT), which was proposed by Sadlier, proves to be effective in improving the efficiency on many occasions. However,...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2008.10.002

    authors: Ding M,Tong R,Liao SH,Dong J

    更新日期:2009-04-01 00:00:00

  • Profiling intra-patient type I diabetes behaviors.

    abstract:BACKGROUND:The large intra-patient variability in type 1 diabetic patients dramatically reduces the ability to achieve adequate blood glucose control. A novel methodology to identify different blood glucose dynamics profiles will allow therapies to be more accurate and tailored according to patient's conditions and to ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2016.08.022

    authors: Contreras I,Quirós C,Giménez M,Conget I,Vehi J

    更新日期:2016-11-01 00:00:00

  • A model of fluid resuscitation following burn injury: formulation and parameter estimation.

    abstract::A dynamic compartmental model is developed to describe the redistribution of fluid and albumin between the circulation and the intact and injured interstitia following burn injury in humans. Transcapillary fluid and albumin exchange is described by a coupled Starling mechanism, while the effect of the burn is represen...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(95)01637-9

    authors: Ampratwum RT,Bowen BD,Lund T,Reed RK,Bert JL

    更新日期:1995-06-01 00:00:00

  • Social network Analysis-based classifier (SNAc): A case study on time course gene expression data.

    abstract:BACKGROUND AND OBJECTIVES:Social Network Analysis is an attractive approach to model and analyze complex networks. In recent years, several bioinformatics related networks have been modeled and analyzed thoroughly using social network analysis. The objective of this study is to build a social network analysis based cla...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2017.06.015

    authors: Üçer S,Koçak Y,Ozyer T,Alhajj R

    更新日期:2017-10-01 00:00:00

  • Shape determination of attached fluctuating phospholipid vesicles.

    abstract::A method to determine the shapes of a thermally fluctuating phospholipid vesicle is described. The vesicle that was attached at one point to a glass plate was submitted to a flow. It was observed by an inverted optical microscope using phase contrast technique. A large number of consecutive video images were digitised...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/S0169-2607(03)00065-8

    authors: Sevsek F,Gomisccek G

    更新日期:2004-03-01 00:00:00

  • SOA-based digital library services and composition in biomedical applications.

    abstract::Carefully collected, high-quality data are crucial in biomedical visualization, and it is important that the user community has ready access to both this data and the high-performance computing resources needed by the complex, computational algorithms that will process it. Biological researchers generally require data...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2010.08.009

    authors: Zhao X,Liu E,Clapworthy GJ,Viceconti M,Testi D

    更新日期:2012-06-01 00:00:00

  • A SAS macro for constructing simultaneous confidence intervals for multinomial proportions.

    abstract::Quesenberry and Hurst (1964), Goodman (1965) and Fitzpatrick and Scott (1987) proposed simultaneous construction of confidence intervals for multinomial proportions, however. statistical computing packages do not generally give one the option of specifying the type of construction to be used. We have written a SAS mac...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(97)01809-9

    authors: May WL,Johnson WD

    更新日期:1997-07-01 00:00:00

  • Epileptic EEG detection using neural networks and post-classification.

    abstract::Electroencephalogram (EEG) has established itself as an important means of identifying and analyzing epileptic seizure activity in humans. In most cases, identification of the epileptic EEG signal is done manually by skilled professionals, who are small in number. In this paper, we try to automate the detection proces...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2008.02.005

    authors: Patnaik LM,Manyam OK

    更新日期:2008-08-01 00:00:00

  • Assessment of hepatic insulin degradation, in normoglycemic hypertensive patients, by minimal modelling of standard intravenous glucose tolerance test data.

    abstract::Role of hepatic insulin degradation in modulating insulin delivery to peripheral circulation, in insulin-resistant hypertensive patients, is not yet fully understood. This issue was investigated here by a novel application to hypertension of a previously proposed minimal modelling of insulin and C-peptide data, using ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2009.08.007

    authors: Di Nardo F,Boemi M,Burattini R

    更新日期:2010-02-01 00:00:00

  • Vision-based motion detection, analysis and recognition of epileptic seizures--a systematic review.

    abstract::The analysis of human motion from video has been the object of interest for many application areas, these including surveillance, control, biomedical analysis, video annotation etc. This paper addresses the advances within this topic in relation to epilepsy, a domain where human motion is with no doubt one of the most...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章,评审

    doi:10.1016/j.cmpb.2012.08.005

    authors: Pediaditis M,Tsiknakis M,Leitgeb N

    更新日期:2012-12-01 00:00:00

  • Practical mini-PACS based on a hybrid video and digital network.

    abstract::The Department of Radiology of the Shinshu University Hospital is presently in the process of developing a new type of mini-PACS with a hybrid architecture consisting of a video and a digital image archiving network. The video block consists of a server station with a video write-once optical disk (LD) and three works...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(91)90058-2

    authors: Takizawa M,Sone S,Imai S,Sakai F,Imai Y,Maruyama A

    更新日期:1991-10-01 00:00:00

  • Safety assessment of data management in a clinical laboratory.

    abstract::This paper briefly reviews work undertaken within the DTI-sponsored MORSE project. The Clinical Biochemistry Department of the West Middlesex University Hospital, one of the five project partners, provides clinical and laboratory services to a wide range of users. The Laboratory Information Management System used with...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(94)90146-5

    authors: Fink R

    更新日期:1994-07-01 00:00:00

  • An incremental learning system for atrial fibrillation detection based on transfer learning and active learning.

    abstract:BACKGROUND AND OBJECTIVE:Atrial fibrillation (AF) is a type of arrhythmia with high incidence. Automatic AF detection methods have been studied in previous works. However, a model cannot be used all the time without any improvement. And updating model requires adequate data and cost. Therefore, this study aims at findi...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.105219

    authors: Shi H,Wang H,Qin C,Zhao L,Liu C

    更新日期:2020-04-01 00:00:00

  • A SAS macro for sample size re-estimation.

    abstract::The assessment of sample size in clinical trials comparing means requires a variance estimate of the main efficacy variable. If no reliable information about the variance of the key response is available at the beginning of a clinical trial, the use of data from the first 'few' patients entered in the trial ('internal...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(00)00119-x

    authors: Zellner D,Zellner GE,Keller F

    更新日期:2001-06-01 00:00:00

  • SAS macros for estimation of direct adjusted cumulative incidence curves under proportional subdistribution hazards models.

    abstract::The cumulative incidence function is commonly reported in studies with competing risks. The aim of this paper is to compute the treatment-specific cumulative incidence functions, adjusting for potentially imbalanced prognostic factors among treatment groups. The underlying regression model considered in this study is ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2010.07.005

    authors: Zhang X,Zhang MJ

    更新日期:2011-01-01 00:00:00

  • A program for the user-independent computation of the correlation dimension and the largest Lyapunov exponent of heart rate dynamics from small data sets.

    abstract::We propose a specially optimized computer program for the user-independent calculation of the correlation dimension D and the largest Lyapunov exponent L of heart rate dynamics on the basis of only 1024 electrocardiographically recorded RR intervals (heartbeat intervals). The validity of our program was established by...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 临床试验,杂志文章

    doi:10.1016/0169-2607(95)01707-0

    authors: Ganz RE,Lenz C

    更新日期:1996-01-01 00:00:00

  • Assessment of auditory threshold using Multiple Magnitude-Squared Coherence and amplitude modulated tones monaural stimulation around 40 Hz.

    abstract:BACKGROUND AND OBJECTIVE:The use of objective detection techniques applied to the auditory steady-state responses (ASSRs) for the assessment of auditory thresholds has been investigated over the years. The idea consists in setting up the audiometric profile without subjective inference from patients and evaluators. The...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2018.01.031

    authors: Silva GM,Antunes F,Henrique CS,Felix LB

    更新日期:2018-06-01 00:00:00

  • BASIC computer program to summarize data using nonparametric and parametric statistics including Anderson-Darling test for normality.

    abstract::Tools for calculating Gaussian parametric statistics are widely available in hand-held calculators and program packages for desktop as well as mainframe computers. The standard deviation calculated from non-Gaussian data may, however, be meaningless or even absurd. Furthermore, the standard error of the mean is freque...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(88)90046-6

    authors: Theodorsson E

    更新日期:1988-03-01 00:00:00

  • Fixing the nonconvergence bug in logistic regression with SPLUS and SAS.

    abstract::When analyzing clinical data with binary outcomes, the parameter estimates and consequently the odds ratio estimates of a logistic model sometimes do not converge to finite values. This phenomenon is due to special conditions in a data set and known as 'separation'. Statistical software packages for logistic regressio...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(02)00088-3

    authors: Heinze G,Ploner M

    更新日期:2003-06-01 00:00:00

  • Computer-aided systems in the management of type I diabetes: the application of a model-based strategy.

    abstract::One approach of improving metabolic control in type I diabetic patients is the application of computer-aided procedures aimed at supporting the decision on optimal therapeutic regimens. To accomplish this, a complex strategy was developed which in an individual patient permits (1) the evaluation of metabolic data by m...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(90)90103-g

    authors: Salzsieder E,Albrecht G,Fischer U,Rutscher A,Thierbach U

    更新日期:1990-07-01 00:00:00