Plant SAM-Domain Proteins Start to Reveal Their Roles.

Abstract:

:Proteins often act in complexes assembled via protein-protein interaction domains. The sterile alpha motif (SAM) domain is one of the most prominent interaction domains in animals and is present in proteins of diverse functions. This domain allows head-to-tail closed oligomerisation or polymer formation resulting in homo- and/or heterocomplexes that have been shown to be important for proper protein localisation and function. In plants this domain is also present but has been poorly studied except for recent studies on the LEAFY floral regulator and the tRNA import component (TRIC)1/2 proteins. Here we catalogue SAM domain-containing proteins from arabidopsis (Arabidopsis thaliana), compare plant and other eukaryotic SAM domains, and perform homology modelling to probe plant SAM domain interaction capabilities.

journal_name

Trends Plant Sci

journal_title

Trends in plant science

authors

Denay G,Vachon G,Dumas R,Zubieta C,Parcy F

doi

10.1016/j.tplants.2017.06.006

subject

Has Abstract

pub_date

2017-08-01 00:00:00

pages

718-725

issue

8

eissn

1360-1385

issn

1878-4372

pii

S1360-1385(17)30118-8

journal_volume

22

pub_type

杂志文章,评审
  • DIAGEOTROPICA: news from the auxin swamp.

    abstract::Recently established links between the tomato cyclophilin A-type protein DIAGEOTROPICA and the regulation of polar auxin transport provide first mechanistic insights into the function of this enigmatic locus. ...

    journal_title:Trends in plant science

    pub_type: 评论,杂志文章

    doi:10.1016/j.tplants.2015.04.009

    authors: Retzer K,Luschnig C

    更新日期:2015-06-01 00:00:00

  • Maize and sorghum: genetic resources for bioenergy grasses.

    abstract::The highly photosynthetic-efficient C4 grasses, such as switchgrass (Panicum virgatum), Miscanthus (Miscanthusxgiganteus), sorghum (Sorghum bicolor) and maize (Zea mays), are expected to provide abundant and sustainable resources of lignocellulosic biomass for the production of biofuels. A deeper understanding of the ...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2008.06.002

    authors: Carpita NC,McCann MC

    更新日期:2008-08-01 00:00:00

  • Illuminating the molecular basis of gene-for-gene resistance; Arabidopsis thaliana RRS1-R and its interaction with Ralstonia solanacearum popP2.

    abstract::Elucidation of the molecular basis of gene-for-gene interactions between disease-resistance (R) genes and pathogen avirulence (avr) genes has been a Holy Grail of plant pathology for the past decade. Recent studies of the R-avr interaction between RRS1-R and popP2 by Laurent Deslandes et al. provide new insights and s...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2003.11.002

    authors: Lahaye T

    更新日期:2004-01-01 00:00:00

  • The 14-3-3 proteins: cellular regulators of plant metabolism.

    abstract::Signal transduction and enzyme regulation are known to occur via phosphorylation, but it is becoming increasingly apparent that phosphorylation might be only a necessary preamble to regulation. In many cases, the phosphorylated target protein must associate with a specialized adapter protein, known as 14-3-3, to compl...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/s1360-1385(99)01462-4

    authors: Chung HJ,Sehnke PC,Ferl RJ

    更新日期:1999-09-01 00:00:00

  • Short on phosphate: plant surveillance and countermeasures.

    abstract::Metabolism depends on inorganic phosphate (P(i)) as reactant, allosteric effector and regulatory moiety in covalent protein modification. To cope with P(i) shortage (a common situation in many ecosystems), plants activate a set of adaptive responses to enhance P(i) recycling and acquisition by reprogramming metabolism...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2004.09.003

    authors: Ticconi CA,Abel S

    更新日期:2004-11-01 00:00:00

  • GUN1-Interacting Proteins Open the Door for Retrograde Signaling.

    abstract::Genomes Uncoupled 1 (GUN1) plays a critical role in various retrograde signaling pathways. Despite numerous studies, the precise molecular mechanism underlying GUN1-mediated retrograde signaling remains elusive. Recently, MORF2 and cpHSC70 have been identified as GUN1-interacting proteins, linking retrograde signaling...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2019.07.005

    authors: Jia Y,Tian H,Zhang S,Ding Z,Ma C

    更新日期:2019-10-01 00:00:00

  • Lesion mimic mutants: keys for deciphering cell death and defense pathways in plants?

    abstract::The identification of several lesion mimic mutants (LMM) that misregulate cell death constitutes a powerful tool to unravel programmed cell death (PCD) pathways in plants, particularly the hypersensitive response (HR), a form of PCD associated with resistance to pathogens. Recently, the characterization of novel LMM h...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/S1360-1385(03)00108-0

    authors: Lorrain S,Vailleau F,Balagué C,Roby D

    更新日期:2003-06-01 00:00:00

  • Three-dimensional geometric morphometrics for studying floral shape variation.

    abstract::Variation in floral shape is of major interest to evolutionary and pollination biologists, plant systematists and developmental geneticists. Quantifying this variation has been difficult due to the three-dimensional (3D) complexity of angiosperm flowers. By combining 3D geometric representations of flowers obtained by...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2010.05.005

    authors: van der Niet T,Zollikofer CP,León MS,Johnson SD,Linder HP

    更新日期:2010-08-01 00:00:00

  • Sensing Danger: Key to Activating Plant Immunity.

    abstract::In both plants and animals, defense against pathogens relies on a complex surveillance system for signs of danger. Danger signals may originate from the infectious agent or from the host itself. Immunogenic plant host factors can be roughly divided into two categories: molecules which are passively released upon cell ...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2017.07.005

    authors: Gust AA,Pruitt R,Nürnberger T

    更新日期:2017-09-01 00:00:00

  • Cutting edge of chloroplast proteolysis.

    abstract::Chloroplasts have a dynamic protein environment and, although proteases are presumably major contributors, the identities of these crucial regulatory proteins have only recently been revealed. There are defined proteases within each of the major chloroplast compartments: the ATP-dependent Clp and FtsH proteases in the...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/s1360-1385(02)02326-9

    authors: Adam Z,Clarke AK

    更新日期:2002-10-01 00:00:00

  • Engineering NLR immune receptors for broad-spectrum disease resistance.

    abstract::Two recent reports by Maekawa et al. and Narusaka et al. demonstrated the transfer of a nucleotide-binding domain and leucine-rich repeat (NLR) family of immune receptors into evolutionarily diverged plants without causing adverse fitness consequences. The applications of NLRs in engineering durable and broad-spectrum...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2013.08.005

    authors: Mukhtar MS

    更新日期:2013-09-01 00:00:00

  • Benefits of brassinosteroid crosstalk.

    abstract::Brassinosteroids (BRs) are a group of phytohormones that regulate various biological processes in plants. Interactions and crosstalk between BRs and other plant hormones control a broad spectrum of physiological and developmental processes. In this review, we examine recent findings which indicate that BR signaling co...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2012.05.012

    authors: Choudhary SP,Yu JQ,Yamaguchi-Shinozaki K,Shinozaki K,Tran LS

    更新日期:2012-10-01 00:00:00

  • From central-peripheral to adaxial-abaxial.

    abstract::Higher plants are constructed of three organs--the stem, the root and the leaf. The stem and the root have two axes, apical-basal and central-peripheral, which cross orthogonally. Leaves develop from the shoot apical meristem as lateral organs that have three different axes, apical-basal, adaxial-abaxial and right-lef...

    journal_title:Trends in plant science

    pub_type: 新闻

    doi:10.1016/s1360-1385(01)02155-0

    authors: Tasaka M

    更新日期:2001-12-01 00:00:00

  • Plant conservation genetics in a changing world.

    abstract::Plant conservation genetics provides tools to guide conservation and restoration efforts, measure and monitor success, and ultimately minimize extinction risk by conserving species as dynamic entities capable of evolving in the face of changing conditions. We consider the application of these tools to rare and common ...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2009.08.005

    authors: Kramer AT,Havens K

    更新日期:2009-11-01 00:00:00

  • The evolution of parasitism in plants.

    abstract::The multiple independent origins of plant parasitism suggest that numerous ancestral plant lineages possessed the developmental flexibility to meet the requirements of a parasitic life style, including such adaptations as the ability to recognize host plants, form an invasive haustorium, and regulate the transfer of n...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2010.01.004

    authors: Westwood JH,Yoder JI,Timko MP,dePamphilis CW

    更新日期:2010-04-01 00:00:00

  • Arabidopsis PPP family of serine/threonine phosphatases.

    abstract::Serine/threonine-specific phosphoprotein phosphatases (PPPs) are ubiquitous enzymes in all eukaryotes, but their regulatory functions are largely unknown in higher plants. The Arabidopsis genome encodes 26 PPP catalytic subunits related to type 1, type 2A and so-called novel phosphatases, including four plant-specific...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2007.03.003

    authors: Farkas I,Dombrádi V,Miskei M,Szabados L,Koncz C

    更新日期:2007-04-01 00:00:00

  • Switching on plant genes by external chemical signals.

    abstract::During the past decade there has been rapidly increasing interest in the role of plant volatiles in insect-plant interactions and the induction of plant defence systems by both pathogens and herbivores. Scientists are striving to link the proximate studies elucidating pathways and genes with the ultimate adaptive stud...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/s1360-1385(01)01899-4

    authors: Pickett JA,Poppy GM

    更新日期:2001-04-01 00:00:00

  • Arabidopsis defense response against Fusarium oxysporum.

    abstract::The plant fungal pathogen Fusarium oxysporum (Fox) is the causal agent of root rot or wilt diseases in several plant species, including crops such as tomato (Solanum lycopersicum), banana (Musa sapientum) and asparagus (Asparagus officinalis). Colonization of plants by Fox leads to the necrosis of the infected tissues...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2007.12.004

    authors: Berrocal-Lobo M,Molina A

    更新日期:2008-03-01 00:00:00

  • The role of arbuscular mycorrhizas in reducing soil nutrient loss.

    abstract::Substantial amounts of nutrients are lost from soils via leaching and as gaseous emissions. These losses can be environmentally damaging and expensive in terms of lost agricultural production. Plants have evolved many traits to optimize nutrient acquisition, including the formation of arbuscular mycorrhizas (AM), asso...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2015.03.004

    authors: Cavagnaro TR,Bender SF,Asghari HR,Heijden MGAV

    更新日期:2015-05-01 00:00:00

  • Phytomelatonin: An Emerging Regulator of Plant Biotic Stress Resistance.

    abstract::Melatonin has diverse functions in plant development and stress tolerance, with recent evidence showing a beneficial role in plant biotic stress tolerance. It has been hypothesized that pathogenic invasion causes the immediate generation of melatonin, reactive oxygen species (ROS), and reactive nitrogen species (RNS),...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2020.08.009

    authors: Zhao D,Wang H,Chen S,Yu D,Reiter RJ

    更新日期:2021-01-01 00:00:00

  • Plant innate immunity--sunny side up?

    abstract::Reactive oxygen species (ROS)- and calcium- dependent signaling pathways play well-established roles during plant innate immunity. Chloroplasts host major biosynthetic pathways and have central roles in energy production, redox homeostasis, and retrograde signaling. However, the organelle's importance in immunity has ...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2014.10.002

    authors: Stael S,Kmiecik P,Willems P,Van Der Kelen K,Coll NS,Teige M,Van Breusegem F

    更新日期:2015-01-01 00:00:00

  • Helping plants to deal with insects: the role of beneficial soil-borne microbes.

    abstract::Several soil-borne microbes such as mycorrhizal fungi and plant growth-promoting rhizobacteria can help plants to deal with biotic and abiotic stresses via plant growth promotion and induced resistance. Such beneficial belowground microbes interact in a bidirectional way via the plant with aboveground insects such as ...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2010.05.007

    authors: Pineda A,Zheng SJ,van Loon JJ,Pieterse CM,Dicke M

    更新日期:2010-09-01 00:00:00

  • Hormesis: Highly Generalizable and Beyond Laboratory.

    abstract::Hormesis is a biphasic dose-response relationship with contrasting effects of low versus high doses of stress. Hormesis is rapidly developing in plant science research and has wide implications for risk assessment, stress biology, and agriculture. Here, we explore selected areas of importance to the concept of hormesi...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2020.05.006

    authors: Agathokleous E,Kitao M,Calabrese EJ

    更新日期:2020-11-01 00:00:00

  • Oxidative tailoring of carotenoids: a prospect towards novel functions in plants.

    abstract::Carotenoids not only play a crucial role in their intact form but also are an important reservoir of lipid-derived bioactive mediators. The process is initiated by tailoring enzymes that cleave carotenoids into apocarotenoids. Apocarotenoids act as visual or volatile signals to attract pollinating and seed dispersal a...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2005.02.007

    authors: Bouvier F,Isner JC,Dogbo O,Camara B

    更新日期:2005-04-01 00:00:00

  • Carotenoid sequestration in plants: the role of carotenoid-associated proteins.

    abstract::In plants, carotenoid accumulation and sequestration take place within chloroplasts and chromoplasts. In the chloroplast, practically all carotenoids are associated with chlorophyll-binding proteins, whereas chromoplasts have developed a unique mechanism to sequester carotenoids within specific lipoprotein structures....

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/s1360-1385(99)01414-4

    authors: Vishnevetsky M,Ovadis M,Vainstein A

    更新日期:1999-06-01 00:00:00

  • The challenge of constructing large phylogenetic trees.

    abstract::The amount of sequence data available to reconstruct the evolutionary history of genes and species has increased 20-fold in the past decade. Consequently the size of phylogenetic analyses has grown as well, and phylogenetic methods, algorithms and their implementations have struggled to keep pace. Computational and ot...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/S1360-1385(03)00165-1

    authors: Sanderson MJ,Driskell AC

    更新日期:2003-08-01 00:00:00

  • Leveraging metabolomics for functional investigations in sequenced marine diatoms.

    abstract::Recent years have witnessed the genomic decoding of a wide range of photosynthetic organisms from the model plant Arabidopsis thaliana and the complex genomes of important crop species to single-celled marine phytoplankton. The comparative sequencing of green, red and brown algae has provided considerable insight into...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2012.02.005

    authors: Fernie AR,Obata T,Allen AE,Araújo WL,Bowler C

    更新日期:2012-07-01 00:00:00

  • Targeting detoxification pathways: an efficient approach to obtain plants with multiple stress tolerance?

    abstract::A serious factor limiting the engineering of stress tolerance has been our ignorance about the function of stress-induced genes. A stress-activated novel aldose-aldehyde reductase was cloned from alfalfa. The ectopic expression of this gene in tobacco resulted in tolerance to oxidative stress and dehydration. Physiolo...

    journal_title:Trends in plant science

    pub_type: 新闻

    doi:10.1016/s1360-1385(01)01983-5

    authors: Bartels D

    更新日期:2001-07-01 00:00:00

  • PHERES1 Controls Endosperm Gene Imprinting and Seed Development.

    abstract::In contrast to mammals, genomic imprinting primarily occurs in the endosperm in flowering plants. Nevertheless, the imprinting drivers and functions of imprinted genes remain poorly understood. Batista et al. identified the type I MADS-box transcription factor (TF) PHERES1 (PHE1) as a key regulator of some imprinted a...

    journal_title:Trends in plant science

    pub_type: 评论,杂志文章

    doi:10.1016/j.tplants.2020.03.004

    authors: Wang Y,Jiang H,Wang G

    更新日期:2020-06-01 00:00:00

  • siRNAs and DNA methylation: seedy epigenetics.

    abstract::To understand how DNA sequence is translated to phenotype we must understand the epigenetic features that regulate gene expression. Recent research illuminates the complex interactions between DNA methylation, small RNAs, silencing of transposable elements, and genomic imprinting in the Arabidopsis (Arabidopsis thalia...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2010.01.002

    authors: Mosher RA,Melnyk CW

    更新日期:2010-04-01 00:00:00