Evaluation of Strategies to Separate Root-Associated Microbial Communities: A Crucial Choice in Rhizobiome Research.

abstract：:The sheep intestinal tract is characterized by a diverse microbial ecosystem that is vital for the host to digest diet material. The importance of gut microbiota (GM) of animals has also been widely acknowledged because of its pivotal roles in the health and well-being of animals. However, there are no relevant studie...

journal_title：Frontiers in microbiology

authors： Zhang H,Shao M,Huang H,Wang S,Ma L,Wang H,Hu L,Wei K,Zhu R

更新日期：2018-01-31 00:00:00

abstract：:Streptomyces clavuligerus F613-1 produces a clinically important β-lactamase inhibitor, clavulanic acid (CA). Although the biosynthesis pathway of CA has essentially been elucidated, the global regulatory mechanisms of CA biosynthesis remain unclear. The paired genes cagS and cagR, which are annotated, respectively, a...

journal_title：Frontiers in microbiology

authors： Fu J,Qin R,Zong G,Liu C,Kang N,Zhong C,Cao G

更新日期：2019-02-14 00:00:00

abstract：:The structure and function of the plant microbiome is driven by plant species and prevailing environmental conditions. Effectuated by breeding efforts, modern crops diverge genetically and phenotypically from their wild relatives but little is known about consequences for the associated microbiota. Therefore, we studi...

journal_title：Frontiers in microbiology

authors： Zachow C,Müller H,Tilcher R,Berg G

更新日期：2014-08-26 00:00:00

abstract：:The purpose of present study was the simulation of an oil spill accompanied by burial of significant amount of petroleum hydrocarbons (PHs) in coastal sediments. Approximately 1000 kg of sediments collected in Messina harbor were spiked with Bunker C furnace fuel oil (6500 ppm). The rapid consumption of oxygen by aero...

journal_title：Frontiers in microbiology

authors： Genovese M,Crisafi F,Denaro R,Cappello S,Russo D,Calogero R,Santisi S,Catalfamo M,Modica A,Smedile F,Genovese L,Golyshin PN,Giuliano L,Yakimov MM

更新日期：2014-04-14 00:00:00

abstract：:Although the mechanisms that precisely time initiation of chromosome replication in bacteria remain unclear, most clock models are based on accumulation of the active initiator protein, DnaA-ATP. During each cell division cycle, sufficient DnaA-ATP must become available to interact with a distinct set of low affinity ...

journal_title：Frontiers in microbiology

authors： Rao P,Rozgaja TA,Alqahtani A,Grimwade JE,Leonard AC

更新日期：2018-07-26 00:00:00

abstract：:The prevalence of antimicrobial resistance (AR) in bacteria isolated from U.S. food animals has increased over the last several decades as have concerns of AR foodborne zoonotic human infections. Resistance mechanisms identified in U.S. animal isolates of Salmonella enterica included resistance to aminoglycosides (e.g...

journal_title：Frontiers in microbiology

authors： Frye JG,Jackson CR

更新日期：2013-05-23 00:00:00

abstract：:Host population density is positively associated with the strength of social interactions or the frequency of physical contacts, and thus potentially influences microbial transmission among individuals. However, the relationship between host density and gut microbiota remains unknown. Here, we characterized the gut mi...

journal_title：Frontiers in microbiology

authors： Li H,Qu J,Li T,Li J,Lin Q,Li X

更新日期：2016-05-18 00:00:00

abstract：:Pseudomonas pseudoalcaligenes KF707 is a soil bacterium which is known for its capacity to aerobically degrade harmful organic compounds such as polychlorinated biphenyls (PCBs) using biphenyl as co-metabolite. Here we provide the first genetic and functional analysis of the KF707 respiratory terminal oxidases in cell...

journal_title：Frontiers in microbiology

authors： Sandri F,Fedi S,Cappelletti M,Calabrese FM,Turner RJ,Zannoni D

更新日期：2017-06-30 00:00:00

abstract：:Bacillus cereus is a Gram-positive endospore forming bacterium known for its wide spectrum of phenotypic traits, enabling it to occupy diverse ecological niches. Although the population structure of B. cereus is highly dynamic and rather panmictic, production of the emetic B. cereus toxin cereulide is restricted to st...

journal_title：Frontiers in microbiology

authors： Ehling-Schulz M,Frenzel E,Gohar M

更新日期：2015-07-14 00:00:00

abstract：:This study identified the lactic acid bacteria (LAB) biota and the volatilome profile of 28 typical sourdoughs of Irpinia-a large area of the Campania region of Southern Italy where numerous breads are produced, even today, following the ancient procedures of sourdough fermentation and for which information on the mic...

journal_title：Frontiers in microbiology

authors： Reale A,Di Renzo T,Boscaino F,Nazzaro F,Fratianni F,Aponte M

更新日期：2019-07-24 00:00:00

abstract：:Human rhinovirus (HRV) remains a leading cause of several human diseases including the common cold. Despite considerable research over the last 60 years, development of an effective vaccine to HRV has been viewed by many as unfeasible due, in part, to the antigenic diversity of circulating HRVs in nature. Over 150 ant...

journal_title：Frontiers in microbiology

authors： Stobart CC,Nosek JM,Moore ML

更新日期：2017-12-05 00:00:00

abstract：:Plant rhizospheres encompass a dynamic zone of interactions between microorganisms and their respective plant hosts. For decades, researchers have worked to understand how these complex interactions influence different aspects of plant growth, development, and evolution. Studies of plant-microbial interactions in the ...

journal_title：Frontiers in microbiology

authors： Garcia J,Kao-Kniffin J

更新日期：2018-07-11 00:00:00

abstract：:Probiotics are functional foods that can effectively regulate lipid reduction and maintain body health. In this study, a strain of Lactobacillus fermentum CQPC04 (LF-CQPC04) isolated from traditional naturally fermented vegetables (Sichuan pickles) was studied, and its effects on lipid reduction in mice, as well as it...

journal_title：Frontiers in microbiology

authors： Yi R,Tan F,Zhou X,Mu J,Li L,Du X,Yang Z,Zhao X

更新日期：2020-09-03 00:00:00

abstract：:Nitrous oxide (N(2)O) is an environmentally important atmospheric trace gas because it is an effective greenhouse gas and it leads to ozone depletion through photo-chemical nitric oxide (NO) production in the stratosphere. Mitigating its steady increase in atmospheric concentration requires an understanding of the mec...

journal_title：Frontiers in microbiology

authors： Schreiber F,Wunderlin P,Udert KM,Wells GF

更新日期：2012-10-23 00:00:00

abstract：:Common saprophytic fungi are seldom present in Protea infructescences, which is strange given the abundance of mainly dead plant tissue in this moist protected environment. We hypothesized that the absence of common saprophytic fungi in Protea infructescences could be due to a special symbiosis where the presence of m...

journal_title：Frontiers in microbiology

authors： Human ZR,Moon K,Bae M,de Beer ZW,Cha S,Wingfield MJ,Slippers B,Oh DC,Venter SN

更新日期：2016-11-02 00:00:00

abstract：:DNA polymerase is a ubiquitous enzyme that synthesizes complementary DNA strands according to the template DNA in living cells. Multiple enzymes have been identified from each organism, and the shared functions of these enzymes have been investigated. In addition to their fundamental role in maintaining genome integri...

journal_title：Frontiers in microbiology

authors： Ishino S,Ishino Y

更新日期：2014-08-29 00:00:00

abstract：:The U. S. Gulf of Mexico is experiencing a dramatic increase in tidal marsh restoration actions, which involves planting coastal areas with smooth cordgrass (Spartina alterniflora) and black needlerush (Juncus roemerianus) for erosion control and to provide habitat for fish and wildlife. It can take decades for sedime...

journal_title：Frontiers in microbiology

authors： Mavrodi OV,Jung CM,Eberly JO,Hendry SV,Namjilsuren S,Biber PD,Indest KJ,Mavrodi DV

更新日期：2018-12-11 00:00:00

abstract：:Fungi represent a rich source of bioactive metabolites and some are marketed as alternatives to synthetic agrochemicals against plant pathogens. However, the culturability of fungal strains in artificial laboratory conditions is still limited and the standard mono-cultures do not reflect their full spectrum chemical d...

journal_title：Frontiers in microbiology

authors： Oppong-Danquah E,Parrot D,Blümel M,Labes A,Tasdemir D

更新日期：2018-09-06 00:00:00

abstract：:Chandipura Virus (CHPV) a negative-stranded RNA virus belonging to the Rhabdoviridae family, has been previously reported to bring about neuronal apoptosis by stimulating oxidative stress. Our in silico data suggested the involvement of Angiotensin II in intracellular Ca2+ secretion within CHPV infected cells that fur...

journal_title：Frontiers in microbiology

authors： Verma AK,Ghosh S,Basu A

更新日期：2018-07-06 00:00:00

abstract：:N6-methyladenosine (m6A) plays important roles in a branch of biological and physiological processes. Accurate identification of m6A sites is especially helpful for understanding their biological functions. Since the wet-lab techniques are still expensive and time-consuming, it's urgent to develop computational method...

journal_title：Frontiers in microbiology

authors： Zhang J,Feng P,Lin H,Chen W

更新日期：2018-05-14 00:00:00

abstract：:Streptococcus pneumoniae colonizes the upper airways of children and the elderly. Colonization progresses to persistent carriage when S. pneumoniae forms biofilms, a feature required for the development of pneumococcal disease. Nasopharyngeal biofilms are structured with a matrix that includes extracellular DNA (eDNA)...

journal_title：Frontiers in microbiology

authors： Angulo-Zamudio UA,Vidal JE,Nazmi K,Bolscher JGM,Leon-Sicairos C,Antezana BS,Canizalez-Roman A,León-Sicairos N

更新日期：2019-10-18 00:00:00

abstract：:Fluoroquinolone resistance can cause major clinical problems. Here, we investigated fluoroquinolone resistance mechanisms in a clinical Escherichia coli isolate, HUE1, which had no mutations quinolone resistance-determining regions (QRDRs) of DNA gyrase and topoisomerase IV. HUE1 demonstrated MICs that exceeded the br...

journal_title：Frontiers in microbiology

authors： Sato T,Yokota S,Uchida I,Okubo T,Usui M,Kusumoto M,Akiba M,Fujii N,Tamura Y

更新日期：2013-05-24 00:00:00

abstract：:[This corrects the article DOI: 10.3389/fmicb.2019.03123.]. ...

journal_title：Frontiers in microbiology

authors： Armistead B,Whidbey C,Iyer LM,Herrero-Foncubierta P,Quach P,Haidour A,Aravind L,Cuerva JM,Jaspan HB,Rajagopal L

更新日期：2020-02-25 00:00:00

abstract：:The selection of yeasts intended as starters for table olives is a complex process, including a characterization step at laboratory level and a validation at lab level and factory-scale. The characterization at lab level deals with the assessment of some technological traits (growth under different temperatures and at...

journal_title：Frontiers in microbiology

authors： Bevilacqua A,Corbo MR,Sinigaglia M

更新日期：2012-05-31 00:00:00

abstract：:Variation among animals in their host-associated microbial communities is increasingly recognized as a key determinant of important life history traits including growth, metabolism, and resistance to disease. Quantitative estimates of the factors shaping the stability of host microbiomes over time at the individual le...

journal_title：Frontiers in microbiology

authors： Harrison XA,Price SJ,Hopkins K,Leung WTM,Sergeant C,Garner TWJ

更新日期：2019-12-20 00:00:00

abstract：:In order to decipher the nature of the slowly growing Mycobacterium tuberculosis (M.tuberculosis) lineage 7, the differentially abundant proteins in strains of M. tuberculosis lineage 7 and lineage 4 were defined. Comparative proteomic analysis by mass spectrometry was employed to identify, quantitate and compare the ...

journal_title：Frontiers in microbiology

authors： Yimer SA,Birhanu AG,Kalayou S,Riaz T,Zegeye ED,Beyene GT,Holm-Hansen C,Norheim G,Abebe M,Aseffa A,Tønjum T

更新日期：2017-05-09 00:00:00

abstract：:Listeria monocytogenes (Lm) is a common environmental bacterium that thrives on vegetation and soil matter, but can infect humans if contaminated food products are ingested, resulting in severe disease in immunosuppressed populations, including pregnant women and newborns. To better understand how the unique immunolog...

journal_title：Frontiers in microbiology

authors： Wolfe B,Kerr AR,Mejia A,Simmons HA,Czuprynski CJ,Golos TG

更新日期：2019-09-11 00:00:00

abstract：:This study was designed to evaluate the protection mechanism of oral administration of Clostridium butyricum against Salmonella enteritidis (SE) colonization in broilers. In the current study, 180 one-day-old healthy Arbor Acres (AA) broilers were meanly grouped into three, with three replicates of 20 birds each. An n...

journal_title：Frontiers in microbiology

authors： Zhao X,Yang J,Wang L,Lin H,Sun S

更新日期：2017-08-09 00:00:00

abstract：:Although complete genome sequences hold particular value for an accurate description of core genomes, the identification of strain-specific genes, and as the optimal basis for functional genomics studies, they are still largely underrepresented in public repositories. Based on an assessment of the genome assembly comp...

journal_title：Frontiers in microbiology

authors： Schmid M,Muri J,Melidis D,Varadarajan AR,Somerville V,Wicki A,Moser A,Bourqui M,Wenzel C,Eugster-Meier E,Frey JE,Irmler S,Ahrens CH

更新日期：2018-01-30 00:00:00

abstract：:The present study used a combination of 16S rRNA MiSeq sequencing strategy and gas chromatograph time of flight mass spectrometer (GC-TOF/MS) technique to investigate the effects of starch sources on the colonic microbiota and their metabolites in finishing pigs. A total of 72 crossbred barrows were allocated to three...

journal_title：Frontiers in microbiology

authors： Yu M,Li Z,Chen W,Rong T,Wang G,Ma X

更新日期：2019-05-29 00:00:00