Structural requirements for long-chain (sphingoid) base inhibition of protein kinase C in vitro and for the cellular effects of these compounds.

Abstract:

:Sphingosine, sphinganine, and other long-chain (sphingoid) bases inhibit protein kinase C in vitro and block cellular responses to agonists that are thought to act via this enzyme. To gain further insight into the mechanism of this inhibition, a series of long-chain analogues differing in alkyl chain length (11-20 carbon atoms), stereochemistry, and headgroup were examined for (a) inhibition of protein kinase C activity in vitro, (b) the neutrophil respiratory burst in response to phorbol myristate acetate (PMA), (c) the PMA-induced differentiation of HL-60 cells, and (d) the growth of Chinese hamster ovary cells. In every instance, the effects were maximal with the 18-carbon homologues, which are the same length as the predominant naturally occurring long-chain base (sphingosine). The lower potency of the shorter chain homologues was partially due to decreased uptake by cells. Small differences were obtained with the four stereoisomers of sphingosine (i.e., D and L forms of erythro- and threo-sphingosine), with N-methyl derivatives of the different sphingosine homologues, and with simpler alkylamines (e.g., stearylamine). The potency of the different headgroup analogues may be affected by the degree of protonation at the assay pH. The pKa of sphingosine was measured to be 6.7; the pKa varied among the analogues. These findings establish that the major structural features required for inhibition of protein kinase C and cellular processes dependent on this enzyme are the presence of a free amino group and an aliphatic side chain and that other groups have more subtle effects.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Merrill AH Jr,Nimkar S,Menaldino D,Hannun YA,Loomis C,Bell RM,Tyagi SR,Lambeth JD,Stevens VL,Hunter R

doi

10.1021/bi00434a004

subject

Has Abstract,Author List Incomplete

pub_date

1989-04-18 00:00:00

pages

3138-45

issue

8

eissn

0006-2960

issn

1520-4995

journal_volume

28

pub_type

杂志文章
  • Insights into the catalytic mechanisms of phenylalanine and tryptophan hydroxylase from kinetic isotope effects on aromatic hydroxylation.

    abstract::Phenylalanine hydroxylase (PheH) and tryptophan hydroxylase (TrpH) catalyze the aromatic hydroxylation of phenylalanine and tryptophan, forming tyrosine and 5-hydroxytryptophan, respectively. The reactions of PheH and TrpH have been investigated with [4-(2)H]-, [3,5-(2)H(2)]-, and (2)H(5)-phenylalanine as substrates. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0607554

    authors: Pavon JA,Fitzpatrick PF

    更新日期:2006-09-12 00:00:00

  • Kinetics of oxidative phosphorylation in Paracoccus denitrificans. 1. Mechanism of ATP synthesis at the active site(s) of F0F1-ATPase.

    abstract::(1) The rate of ATP synthesis during NADH-driven aerobic respiration has been measured in plasma membrane vesicles from Paracoccus denitrificans as a function of the concentration of the substrates, ADP and inorganic phosphate (Pi). In both cases, the response of the reaction to changes in the degree of saturation of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00498a013

    authors: Pérez JA,Ferguson SJ

    更新日期:1990-11-20 00:00:00

  • Intercalating polycyclic aromatic hydrocarbon-DNA adducts poison DNA religation by Vaccinia topoisomerase and act as roadblocks to digestion by exonuclease III.

    abstract::Polycyclic aromatic hydrocarbon (PAH)-DNA adducts pervert the execution or fidelity of enzymatic DNA transactions and cause mutations and cancer. Here, we examine the effects of intercalating PAH-DNA adducts on the religation reaction of vaccinia DNA topoisomerase, a prototypal type IB topoisomerase (TopIB), and the 3...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060158h

    authors: Yakovleva L,Handy CJ,Yagi H,Sayer JM,Jerina DM,Shuman S

    更新日期:2006-06-20 00:00:00

  • Pyridoxal 5'-phosphate binding site of pig heart alanine aminotransferase.

    abstract::After borohydride reduction, carboxymethylation, and tryptic digestion of the holoenzyme of pig heart alanine aminotransferase, a single icosapeptide containing the N6-(phosphopyridoxyl)lysine residue was isolated by a combination of gel filtration and ion-exchange chromatogrpahy. Its primary structure was determined ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00581a015

    authors: Tanase S,Kojima H,Morino Y

    更新日期:1979-07-10 00:00:00

  • NMR studies of the phosphotransfer domain of the histidine kinase CheA from Escherichia coli: assignments, secondary structure, general fold, and backbone dynamics.

    abstract::Multidimensional heteronuclear NMR techniques were applied to study the phosphotransfer domain, residues 1-134, of the histidine kinase CheA, from Escherichia coli, which contains the site of autophosphorylation, His48. Assignments of the backbone amide groups and side chain protons are nearly complete. Our studies sh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00042a018

    authors: Zhou H,Lowry DF,Swanson RV,Simon MI,Dahlquist FW

    更新日期:1995-10-24 00:00:00

  • Identification of BECN1 and ATG14 Coiled-Coil Interface Residues That Are Important for Starvation-Induced Autophagy.

    abstract::Autophagy, an essential eukaryotic homeostasis pathway, allows the sequestration of unwanted, damaged, or harmful cytoplasmic components in vesicles called autophagosomes, permitting subsequent lysosomal degradation and nutrient recycling. Autophagosome nucleation is mediated by class III phosphatidylinositol-3-kinase...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00246

    authors: Mei Y,Su M,Sanishvili R,Chakravarthy S,Colbert CL,Sinha SC

    更新日期:2016-08-02 00:00:00

  • How Do Branched Detergents Stabilize GPCRs in Micelles?

    abstract::The structural and functional properties of G protein-coupled receptors (GPCRs) are often studied in a detergent micellar environment, but many GPCRs tend to denature or aggregate in short alkyl chain detergents. In our previous work [Lee, S., et al. (2016) J. Am. Chem. Soc.138, 15425-15433], we showed that GPCRs in a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00183

    authors: Lee S,Ghosh S,Jana S,Robertson N,Tate CG,Vaidehi N

    更新日期:2020-06-16 00:00:00

  • Thioredoxin reductase-thioredoxin fusion enzyme from Mycobacterium leprae: comparison with the separately expressed thioredoxin reductase.

    abstract::Thioredoxin reductase (TrxR) catalyzes the reduction of thioredoxin (Trx) by NADPH. A unique gene organization of TrxR and Trx has been found in Mycobacterium leprae, where TrxR and Trx are encoded by a single gene and, therefore, are expressed as a fusion protein (MlTrxR-Trx). This fusion enzyme is able to catalyze t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980754e

    authors: Wang PF,Marcinkeviciene J,Williams CH Jr,Blanchard JS

    更新日期:1998-11-17 00:00:00

  • Differential recognition of the free versus bound retinol by human microsomal retinol/sterol dehydrogenases: characterization of the holo-CRBP dehydrogenase activity of RoDH-4.

    abstract::All-trans-retinol is the precursor for all-trans-retinoic acid, the activating ligand for nuclear transcription factors retinoic acid receptors. In the cytosol of various cells, most retinol exists in a bound form, complexed with cellular retinol binding protein type I (holo-CRBP). Whether retinoic acid is produced fr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026836r

    authors: Lapshina EA,Belyaeva OV,Chumakova OV,Kedishvili NY

    更新日期:2003-01-28 00:00:00

  • Mechanism of recruitment and activation of the endosome-associated deubiquitinase AMSH.

    abstract::AMSH, a deubiquitinating enzyme (DUB) with exquisite specificity for Lys63-linked polyubiquitin chains, is an endosome-associated DUB that regulates sorting of activated cell-surface signaling receptors to the lysosome, a process mediated by the members of the endosomal sorting complexes required for transport (ESCRT)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401106b

    authors: Davies CW,Paul LN,Das C

    更新日期:2013-11-05 00:00:00

  • Targeting sites within HIV-1 cDNA with a DNA-cleaving ribozyme.

    abstract::A variant of the Tetrahymena ribozyme that efficiently cleaves single-stranded DNA under simulated physiological conditions [Tsang, J., & Joyce, G. F. (1994) Biochemistry 33, 5966-5973] was evaluated as a potential therapeutic agent on the basis of its ability to cleave synthetic oligonucleotide substrates correspondi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960845g

    authors: Raillard SA,Joyce GF

    更新日期:1996-09-10 00:00:00

  • Lipid products of phosphoinositide 3-kinase bind human profilin with high affinity.

    abstract::To gain insight into the physiological function of phosphoinositide 3-kinase (PI 3-kinase) lipid products, this study examines the interactions of the D-3 phosphoinositides with profilin and the consequent effects on actin dynamics and phosphoinositide turnover. Profilin, a ubiquitous actin-regulating protein, plays a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961878z

    authors: Lu PJ,Shieh WR,Rhee SG,Yin HL,Chen CS

    更新日期:1996-11-05 00:00:00

  • Membrane topology of human ASBT (SLC10A2) determined by dual label epitope insertion scanning mutagenesis. New evidence for seven transmembrane domains.

    abstract::The membrane topology of the human apical sodium-dependent bile acid transporter (hASBT) remains unresolved. Whereas N-glycosylation analysis favors a 7 transmembrane (TM) model, membrane insertion scanning supports a 9TM topology. In order to resolve this controversy, we used dual label epitope insertion to systemati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052202j

    authors: Banerjee A,Swaan PW

    更新日期:2006-01-24 00:00:00

  • Metal-dependent DNA cleavage mechanism of the I-CreI LAGLIDADG homing endonuclease.

    abstract::The LAGLIDADG homing endonucleases include free-standing homodimers, pseudosymmetric monomers, and related enzyme domains embedded within inteins. DNA-bound structures of homodimeric I-CreI and monomeric I-SceI indicate that three catalytic divalent metal ions are distributed across a pair of overlapping active sites,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048970c

    authors: Chevalier B,Sussman D,Otis C,Noël AJ,Turmel M,Lemieux C,Stephens K,Monnat RJ Jr,Stoddard BL

    更新日期:2004-11-09 00:00:00

  • Inhibitors bound to Ca(2+)-free sarcoplasmic reticulum Ca(2+)-ATPase lock its transmembrane region but not necessarily its cytosolic region, revealing the flexibility of the loops connecting transmembrane and cytosolic domains.

    abstract::Ca2+-free crystals of sarcoplasmic reticulum Ca2+-ATPase have, up until now, been obtained in the presence of inhibitors such as thapsigargin (TG), bound to the transmembrane region of this protein. Here, we examined the consequences of such binding for the protein. We found that, after TG binding, an active site liga...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701855r

    authors: Montigny C,Picard M,Lenoir G,Gauron C,Toyoshima C,Champeil P

    更新日期:2007-12-25 00:00:00

  • Ligand-induced variations in the reactivity of thio groups of the alpha-subunit of the acetylcholine receptor from Torpedo californica.

    abstract::We have studied alkylation of the acetylcholine receptor by N-[3H]ethylmaleimide ([3H]NEM) under various conditions. The radiolabeled preparations were submitted to sodium dodecyl sulfate-polyacrylamide gel electrophoresis to separate the receptor complex into subunits, and the incorporation of 3H into each type of ch...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00306a001

    authors: de Souza Otero A,Hamilton SL

    更新日期:1984-05-22 00:00:00

  • Essential cysteines in 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase from Escherichia coli: analysis by chemical modification and site-directed mutagenesis.

    abstract::The enzyme 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase (EC 4.1. 2.16) (KDO 8-P synthase) that catalyzes the condensation of D-arabinose 5-phosphate (A 5-P) with phosphoenolpyruvate (PEP) to give 3-deoxy-D-manno-octulosonic acid 8-phosphate (KDO 8-P) and inorganic phosphate (Pi) was inactivated by the thiol-m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952373w

    authors: Salleh HM,Patel MA,Woodard RW

    更新日期:1996-07-09 00:00:00

  • Inactivation of C30A trimethylamine dehydrogenase by N-cyclopropyl-alpha-methylbenzylamine, 1-phenylcyclopropylamine, and phenylhydrazine.

    abstract::Trimethylamine dehydrogenase (TMADH) from the bacterium Methylophilus methylotrophus (sp. W(3)A(1)) and its C30A mutant were inactivated with three known inactivators of monoamine oxidase, namely, phenylhydrazine, N-cyclopropyl-alpha-methylbenzylamine, and 1-phenylcyclopropylamine. All three compounds irreversibly ina...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0105126

    authors: Mitchell DJ,Nikolic D,Jang MH,van Breemen RB,Hille R,Silverman RB

    更新日期:2001-07-24 00:00:00

  • Resonance Raman spectroscopic measurements delineate the structural changes that occur during tau fibril formation.

    abstract::The aggregation of the microtubule-associated protein, tau, into amyloid fibrils is a hallmark of neurodegenerative diseases such as the tauopathies and Alzheimer's disease. Since monomeric tau is an intrinsically disordered protein and the polymeric fibrils possess an ordered cross-β core, the aggregation process is ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500528x

    authors: Ramachandran G,Milán-Garcés EA,Udgaonkar JB,Puranik M

    更新日期:2014-10-21 00:00:00

  • Activators of phosphorylase kinase alter the cross-linking of its catalytic subunit to the C-terminal one-sixth of its regulatory alpha subunit.

    abstract::Phosphorylase kinase, a regulatory enzyme of glycogenolysis in skeletal muscle, is a hexadecameric oligomer consisting of four copies each of a catalytic subunit (gamma) and three regulatory subunits (alpha, beta, and delta, the last being endogenous calmodulin). The enzyme is activated by a variety of effectors actin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982060b

    authors: Nadeau OW,Traxler KW,Fee LR,Baldwin BA,Carlson GM

    更新日期:1999-02-23 00:00:00

  • Structural studies of P22 phage, precursor particles, and proteins by laser Raman spectroscopy.

    abstract::For the study of the protein--protein and protein--nucleic acid interactions in the assembly of virus particles, laser Raman spectra have been obtained in H2O and D2O solutions and as a function of temperature for the following Salmonella phage P22 components: mature phage particles, isolated mature phage DNA, mature ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00259a023

    authors: Thomas GJ Jr,Li Y,Fuller MT,King J

    更新日期:1982-08-03 00:00:00

  • A vibrational analysis of the catalytically important C4-H bonds of NADH bound to lactate or malate dehydrogenase: ground-state effects.

    abstract::We have measured the frequency of the carbon-hydrogen stretching mode of the pro-R and pro-S C4-H bonds of NADH in solution and when bound to pig heart lactate (LDH) or mitochondrial malate (mMDH) dehydrogenases. This is achieved by specifically deuterating the C4 pro-R or pro-S hydrogens of NADH and determining the f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00136a022

    authors: Deng H,Zheng J,Sloan D,Burgner J,Callender R

    更新日期:1992-06-02 00:00:00

  • Distal site aspartate is essential in the catalase activity of catalase-peroxidases.

    abstract::Structural and biochemical characterization of aspartate 152 at the distal heme side of catalase-peroxidase (KatG) from Synechocystis PCC 6803 reveals an important functional role for this residue. In the wild-type protein, the side chain carboxyl group of Asp152 is 7.8 A apart from the heme iron and is hydrogen-bonde...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026944d

    authors: Jakopitsch C,Auer M,Regelsberger G,Jantschko W,Furtmüller PG,Rüker F,Obinger C

    更新日期:2003-05-13 00:00:00

  • Exonucleolytic proofreading during replication of repetitive DNA.

    abstract::We are attempting to understand the processes required to accurately replicate the repetitive DNA sequences whose instability is associated with several human diseases. Here we test the hypothesis that the contribution of exonucleolytic proofreading to frameshift fidelity during replication of repetitive DNA sequences...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952178h

    authors: Kroutil LC,Register K,Bebenek K,Kunkel TA

    更新日期:1996-01-23 00:00:00

  • Examination of the reaction of fully reduced cytochrome oxidase with hydrogen peroxide by flow-flash spectroscopy.

    abstract::The reaction of cytochrome c oxidase with hydrogen peroxide has been of great value in generating and characterizing oxygenated species of the enzyme that are identical or similar to those formed during turnover of the enzyme with dioxygen. Most previous studies have utilized relatively low peroxide concentrations (mi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9916675

    authors: Zaslavsky D,Smirnova IA,Brzezinski P,Shinzawa-Itoh K,Yoshikawa S,Gennis RB

    更新日期:1999-11-30 00:00:00

  • Systematic evaluation of candidate ligands regulating ectodomain shedding of amyloid precursor protein.

    abstract::Despite intense interest in the proteolysis of the β-Amyloid Precursor Protein (APP) in Alzheimer's disease, how the normal processing of this type I receptor-like glycoprotein is physiologically regulated remains ill-defined. In recent years, several candidate protein ligands for APP, including F-spondin, Reelin, β1 ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400165f

    authors: Rice HC,Young-Pearse TL,Selkoe DJ

    更新日期:2013-05-14 00:00:00

  • LNA (locked nucleic acid): high-affinity targeting of complementary RNA and DNA.

    abstract::Locked nucleic acid (LNA) is a nucleic acid analogue containing one or more LNA nucleotide monomers with a bicyclic furanose unit locked in an RNA mimicking sugar conformation. LNA oligonucleotides display unprecedented hybridization affinity toward complementary single-stranded RNA and complementary single- or double...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi0485732

    authors: Vester B,Wengel J

    更新日期:2004-10-26 00:00:00

  • Structural basis of the anionic interface preference and kcat* activation of pancreatic phospholipase A2.

    abstract::Pancreatic phospholipase A(2) (PLA2) shows a strong preference for the binding to the anionic interface and a consequent allosteric activation. In this paper, we show that virtually all the preference is mediated through 3 (Lys-53, -56, and -120) of the 12 cationic residues of bovine pancreatic PLA2. The lysine-to-met...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000740k

    authors: Yu BZ,Poi MJ,Ramagopal UA,Jain R,Ramakumar S,Berg OG,Tsai MD,Sekar K,Jain MK

    更新日期:2000-10-10 00:00:00

  • Redox modulation of endothelial nitric oxide synthase by glutaredoxin-1 through reversible oxidative post-translational modification.

    abstract::S-Glutathionylation is a redox-regulated modification that uncouples endothelial nitric oxide synthase (eNOS), switching its function from nitric oxide (NO) synthesis to (•)O2(-) generation, and serves to regulate vascular function. While in vitro or in vivo eNOS S-glutathionylation with modification of Cys689 and Cys...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400404s

    authors: Chen CA,De Pascali F,Basye A,Hemann C,Zweier JL

    更新日期:2013-09-24 00:00:00

  • Hydrostatic pressure reverses osmotic pressure effects on the specificity of EcoRI-DNA interactions.

    abstract::To characterize the role of water in protein-DNA interactions, we have studied the specificity of the EcoRI restriction endonuclease as a function of osmotic and hydrostatic pressure. The extent of cleavage by the enzyme at noncanonical ("star") sites is shown to depend uniquely upon the osmotic pressure in the reacti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00179a001

    authors: Robinson CR,Sligar SG

    更新日期:1994-04-05 00:00:00