First-generation annotations for the fathead minnow (Pimephales promelas) genome.

Abstract:

:Ab initio gene prediction and evidence alignment were used to produce the first annotations for the fathead minnow (Pimephales promelas) genome. We also describe a genome browser, hosted by the Society of Environmental Toxicology and Chemistry, that provides simplified access to the annotation data in context with the genomic sequence. The present study extends the utility of the fathead minnow genome and supports the continued development of this species as a model organism for predictive toxicology. Environ Toxicol Chem 2017;36:3436-3442. Published 2017 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.

journal_name

Environ Toxicol Chem

authors

Saari TW,Schroeder AL,Ankley GT,Villeneuve DL

doi

10.1002/etc.3929

subject

Has Abstract

pub_date

2017-12-01 00:00:00

pages

3436-3442

issue

12

eissn

0730-7268

issn

1552-8618

journal_volume

36

pub_type

杂志文章
  • Interference of contaminated sediment extracts and environmental pollutants with retinoid signaling.

    abstract::Retinoids are known to regulate important processes such as differentiation, development, and embryogenesis. Some effects, such as malformations in frogs or changes in metabolism of birds, could be related to disruption of the retinoid signaling pathway by exposure to organic contaminants. A new reporter gene assay ha...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/06-513r.1

    authors: Novák J,Benísek M,Pacherník J,Janosek J,Sídlová T,Kiviranta H,Verta M,Giesy JP,Bláha L,Hilscherová K

    更新日期:2007-08-01 00:00:00

  • Paralytic shellfish toxins inhibit copper uptake in Chlamydomonas reinhardtii.

    abstract::Paralytic shellfish toxins are secondary metabolites produced by several species of dinoflagellates and cyanobacteria. Known targets of these toxins, which typically occur at detrimental concentrations during harmful algal blooms, include voltage-gated ion channels in humans and other mammals. However, the effects of ...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.2187

    authors: Cusick KD,Wetzel RK,Minkin SC Jr,Dodani SC,Wilhelm SW,Sayler GS

    更新日期:2013-06-01 00:00:00

  • Comparison of methods for evaluating acute and chronic toxicity in marine sediments.

    abstract::Sublethal test methods are being used with increasing frequency to measure sediment toxicity, but little is known about the relative sensitivity of these tests compared to the more commonly used acute tests. The present study was conducted to compare the sensitivity of several acute and sublethal methods and to invest...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/07-285.1

    authors: Greenstein D,Bay S,Anderson B,Chandler GT,Farrar JD,Keppler C,Phillips B,Ringwood A,Young D

    更新日期:2008-04-01 00:00:00

  • Accumulation of weathered p,p'-DDTs in hybridized Cucurbita pepo cultivars.

    abstract::Cucurbita pepo spp pepo (zucchini) is known as an exceptional weathered dichlorodiphenyldichloroethylene (DDE) accumulator, whereas Cucurbita pepo ssp ovifera (squash) is termed a nonaccumulator. Experiments were conducted with hybridized zucchini and squash to assess the inheritance pattern of DDX (the sum of p,p'-di...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.1887

    authors: Isleyen M,Sevim P,White JC

    更新日期:2012-08-01 00:00:00

  • Validation of an amphibian sperm inhibition toxicological test method using zinc.

    abstract::Analysis of sperm has been investigated as a possible method to examine the toxicity of environmental contaminants. The amphibian sperm inhibition toxicological test (ASITT) method examines the effects of contaminants on Xenopus laevis (African clawed frog) sperm motility and path trajectories. As part of a preliminar...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/03-573.1

    authors: Christensen JR,Bishop CA,Richardson JS,Pauli B,Elliott J

    更新日期:2004-12-01 00:00:00

  • Characterization of the aryl hydrocarbon receptor repressor and a comparison of its expression in Atlantic tomcod from resistant and sensitive populations.

    abstract::Atlantic tomcod from the Hudson River, USA, are resistant to cytochrome P4501A1 (CYP1A1) mRNA induction and early life stage toxicities induced by coplanar polychlorinated biphenyls (PCBs) or tetrachlorodibenzo-p-dioxins but not polycyclic aromatic hydrocarbons. We sought to determine if basal expression or inducibili...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/05-347r.1

    authors: Roy NK,Courtenay SC,Chambers RC,Wirgin II

    更新日期:2006-02-01 00:00:00

  • Polychlorinated biphenyl profiles in ringed seals (Pusa Hispida) reveal historical contamination by a military radar station in Labrador, Canada.

    abstract::Significant amounts of soil contaminated with polychlorinated biphenyls (PCBs) were discovered at a military radar station in Saglek Bay, Labrador, Canada, in 1996. Subsequent work showed elevated PCB concentrations in local marine sediments, in the benthic-associated food web, and in some ringed seals (Pusa hispida)....

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.2468

    authors: Brown TM,Fisk AT,Helbing CC,Reimer KJ

    更新日期:2014-03-01 00:00:00

  • Effects of an antidepressant mixture on the brain serotonin and predation behavior of hybrid striped bass.

    abstract::Antidepressants have been found in measurable concentrations in final treated wastewater effluent and receiving waters throughout the world. Studies have shown that these concentrations are typically not overtly toxic, but the psychotropic mode of action of these chemicals warrants examination of their behavioral effe...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.3114

    authors: Bisesi JH Jr,Sweet LE,van den Hurk P,Klaine SJ

    更新日期:2016-04-01 00:00:00

  • Complexity in multimedia mass balance models: when are simple models adequate and when are more complex models necessary?

    abstract::Three environmental multimedia models of varying degrees of complexity are compared to assess when simple models are adequate and when more complex models are advantageous. The simplest model, the level II (L-II) model, assumes all environmental media are at chemical equilibrium, whereas the more complex models treat ...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:

    authors: Cahill TM,Mackay D

    更新日期:2003-06-01 00:00:00

  • Uptake of polycyclic aromatic hydrocarbon compounds by the gills of the bivalve mollusk Elliptio complanata.

    abstract::Polycyclic aromatic hydrocarbons (PAHs) and herbicides are important contaminants of world water systems with effects on aquatic organisms. The uptake of naphthalene, anthracene, and chrysene by gills of the bivalve mollusk Elliptio complanata was determined. Additionally, the effects of paraquat, atrazine, alachlor, ...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:

    authors: Birdsall K,Kukor JJ,Cheney MA

    更新日期:2001-02-01 00:00:00

  • Reduced cadmium accumulation and toxicity in Daphnia magna under carbon nanotube exposure.

    abstract::With increasing application and commercial production, carbon nanotubes (CNTs) will inevitably be released into aquatic environments and affect the transport and toxicity of toxic metals in ecosystems. The present study examined how CNTs affected the biokinetics and toxicity of a toxic metal, cadmium (Cd), in the fres...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.3122

    authors: Liu J,Wang WX

    更新日期:2015-12-01 00:00:00

  • Analysis of estrogenic hormones in municipal wastewater effluent and surface water using enzyme-linked immunosorbent assay and gas chromatography/tandem mass spectrometry.

    abstract::Although the estrogenic hormones 17 beta-estradiol and 17 alpha-ethinyl estradiol can be quantified in polluted waters by gas chromatography/mass spectrometry (GC/MS) and gas chromatography/tandem mass spectrometry (GC/MS/MS), the compounds often are present at concentrations below detection limits. Enzyme-linked immu...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:

    authors: Huang CH,Sedlak DL

    更新日期:2001-01-01 00:00:00

  • Probabilistic uncertainty analysis of the European Union system for the evaluation of substances multimedia regional distribution model.

    abstract::The European Union System for the Evaluation of Substances (EUSES) is a computerized model system to facilitate and harmonize health and environmental risk assessment of previously notified and new substances. For calculation of regional background exposure, a multimedia distribution model is used. In the present stud...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/03-529

    authors: Matthies M,Berding V,Beyer A

    更新日期:2004-10-01 00:00:00

  • The fungicide propiconazole interferes with embryonic development of the crustacean Daphnia magna.

    abstract::Propiconazole is a fungicide used in a variety of agricultural applications. Preliminary studies had suggested that embryos of the crustacean Daphnia magna are particularly susceptible to the toxicity of this chemical. The goals of the present study were to define endpoints of daphnid embryonic development that could ...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/1551-5028(2001)020<0502:tfpiwe>2.0.co;2

    authors: Kast-Hutcheson K,Rider CV,LeBlanc GA

    更新日期:2001-03-01 00:00:00

  • Acute and chronic toxicity of lead in water and diet to the amphipod Hyalella azteca.

    abstract::We evaluated the influence of waterborne and dietary lead (Pb) exposure on the acute and chronic toxicity of Pb to the amphipod Hyalella azteca. Test solutions were generated by a modified diluter with an extended (24-h) equilibration period. Acute (96-h) toxicity of Pb varied with water hardness in the range of 71 to...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/04-480r.1

    authors: Besser JM,Brumbaugh WG,Brunson EL,Ingersoll CG

    更新日期:2005-07-01 00:00:00

  • Monitoring river sediments contaminated predominantly with polyaromatic hydrocarbons by chemical and in vitro bioassay techniques.

    abstract::Extracts of sediment samples collected from the Morava River and its tributaries (Czech Republic) were examined for mutagenic, dioxin-like, and estrogenic activities. Moreover, the human leukemic HL-60 cell line was tested as a potential model for the detection of effects of environmental contaminants on cell prolifer...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:

    authors: Vondrácek J,Machala M,Minksová K,Bláha L,Murk AJ,Kozubík A,Hofmanová J,Hilscherová K,Ulrich R,Ciganek M,Neca J,Svrcková D,Holoubek I

    更新日期:2001-07-01 00:00:00

  • In Vitro Biotransformation Assays Using Liver S9 Fractions and Hepatocytes from Rainbow Trout (Oncorhynchus mykiss): Overcoming Challenges with Difficult to Test Fragrance Chemicals.

    abstract::In vitro metabolic stability assays using rainbow trout (Oncorhynchus mykiss) isolated hepatocytes (RT-HEP) or hepatic S9 fractions (RT-S9) were introduced to provide biotransformation rate data for the assessment of chemical bioaccumulation in fish. The present study explored the suitability of the RT-HEP and RT-S9 a...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.4872

    authors: Kropf C,Begnaud F,Gimeno S,Berthaud F,Debonneville C,Segner H

    更新日期:2020-12-01 00:00:00

  • Integrating enzymatic responses to organic chemical exposure with total oxyradical absorbing capacity and DNA damage in the European eel Anguilla anguilla.

    abstract::In this work, susceptibility to oxidative stress was analyzed under laboratory conditions in the European eel Anguilla anguilla. Eels were treated with increasing concentrations of benchmark environmental pollutants, namely, benzo[a]pyrene ([BaP], at 0, 0.1, 1, 10, and 50 mg/kg), beta-naphthoflavone ([BNF], at 0, 0.1,...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/02-378

    authors: Regoli F,Winston GW,Gorbi S,Frenzilli G,Nigro M,Corsi I,Focardi S

    更新日期:2003-09-01 00:00:00

  • Effects of androstenedione exposure on fathead minnow (Pimephales promelas) reproduction and embryonic development.

    abstract::High concentrations (300 ng/L) of androstenedione (A4) were identified in snowmelt runoff from fields fertilized with manure from livestock feeding operations in Wisconsin, USA. In fishes, A4 is an active androgen and substrate for biosynthesis of functional androgens (e.g., testosterone and 11-ketotestosterone) and e...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.3092

    authors: DeQuattro ZA,Hemming JD,Barry TP

    更新日期:2015-11-01 00:00:00

  • Runoff simulation with particle-bound fenvalerate in multispecies stream microcosms: importance of biological interactions.

    abstract::Multispecies stream microcosms were used to test the toxicity of the pyrethroid fenvalerate (FV) associated with suspended particles in order to simulate a typical runoff exposure scenario. Stream microcosms were exposed for 1 h in triplicate to 0.0, 13.6, 136, or 1,365 microg/kg FV and effects were monitored for 93 d...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/1551-5028(2001)020<0757:rswpbf>2.0.co;2

    authors: Schulz R,Liess M

    更新日期:2001-04-01 00:00:00

  • Individual and mixture effects of caffeine and sulfamethoxazole on the daggerblade grass shrimp Palaemonetes pugio following maternal exposure.

    abstract::Pharmaceuticals and personal care products (PPCPs) such as caffeine and sulfamethoxazole have been detected in the estuarine environment. The present study characterized effects of a maternal exposure of these compounds on the development of the daggerblade grass shrimp Palaemonetes pugio from embryo to juvenile life ...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.2669

    authors: Garcia RN,Chung KW,DeLorenzo ME,Curran MC

    更新日期:2014-09-01 00:00:00

  • Determining octanol-water partition coefficients for extremely hydrophobic chemicals by combining "slow stirring" and solid-phase microextraction.

    abstract::Octanol-water partition coefficients (KOW ) are widely used in fate and effects modeling of chemicals. Still, high-quality experimental KOW data are scarce, in particular for very hydrophobic chemicals. This hampers reliable assessments of several fate and effect parameters and the development and validation of new mo...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.3300

    authors: Jonker MT

    更新日期:2016-06-01 00:00:00

  • The Impact of Pesticides on Flower-Visiting Insects: A Review with Regard to European Risk Assessment.

    abstract::Flower-visiting insects (FVIs) are an ecologically diverse group of mobile, flying species that should be protected from pesticide effects according to European policy. However, there is an ongoing decline of FVI species, partly caused by agricultural pesticide applications. Therefore, the risk assessment framework ne...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章,评审

    doi:10.1002/etc.4572

    authors: Uhl P,Brühl CA

    更新日期:2019-11-01 00:00:00

  • Acute toxicity of binary-metal mixtures of copper, zinc, and nickel to Pimephales promelas: Evidence of more-than-additive effect.

    abstract::Metal mixture toxicity has been studied for decades. However, the results are not consistent, and thus ecological risk assessment and regulation of mixtures has been difficult. The objective of the present study was to use a systematic experimental design to characterize the toxicity of binary-metal mixture of Cu, Zn,...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.3204

    authors: Lynch NR,Hoang TC,O'Brien TE

    更新日期:2016-02-01 00:00:00

  • Distribution of polycyclic musks in surface sediments from the Pearl River Delta and Macao Coastal Region, South china.

    abstract::Polycyclic musks were measured in surface sediments collected from the Pearl River Delta and Macao coastal region, South China, to investigate contamination from domestic sewage. Three polycyclic musk compounds-4-acetyl-1,1-dimethyl-6-tert-butylindan, 1,3,4,6,7,8-hexahydro-4,6,6,7,8,8-hexamethylcyclopenta(g)-2-benzopy...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/07-106.1

    authors: Zeng X,Mai B,Sheng G,Luo X,Shao W,An T,Fu J

    更新日期:2008-01-01 00:00:00

  • Evidence of impaired health in yellow perch (Perca flavescens) from a biological mercury hotspot in northeastern North America.

    abstract::Few studies have investigated the effects of mercury (Hg) on wild fish from remote areas, even though these fish can have high total Hg concentrations. In Kejimkujik National Park and National Historic Site (KNPNHS), Nova Scotia, Canada, concentrations of total Hg in many yellow perch (Perca flavescens) currently exce...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.2099

    authors: Batchelar KL,Kidd KA,Drevnick PE,Munkittrick KR,Burgess NM,Roberts AP,Smith JD

    更新日期:2013-03-01 00:00:00

  • Gene expression, glutathione status, and indicators of hepatic oxidative stress in laughing gull (Larus atricilla) hatchlings exposed to methylmercury.

    abstract::Despite extensive studies of methylmercury (MeHg) toxicity in birds, molecular effects on birds are poorly characterized. To improve our understanding of toxicity pathways and identify novel indicators of avian exposure to Hg, the authors investigated genomic changes, glutathione status, and oxidative status indicator...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1002/etc.1985

    authors: Jenko K,Karouna-Renier NK,Hoffman DJ

    更新日期:2012-11-01 00:00:00

  • Net trophic transfer efficiencies of polychlorinated biphenyl congeners to lake whitefish (Coregonus clupeaformis) from their food.

    abstract::Lake whitefish (Coregonus clupeaformis) were fed rainbow smelt (Osmerus mordax) in four laboratory tanks over a 133-d experiment. At the start of the experiment, 10 to 14 of the fish in each tank were sacrificed, and the concentrations of 40 polychlorinated biphenyl (PCB) congeners within these fish were determined. P...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/07-274.1

    authors: Madenjian CP,O'Connor DV,Rediske RR,O'Keefe JP,Pothoven SA

    更新日期:2008-03-01 00:00:00

  • Metal Bioavailability Models: Current Status, Lessons Learned, Considerations for Regulatory Use, and the Path Forward.

    abstract::Since the early 2000s, biotic ligand models and related constructs have been a dominant paradigm for risk assessment of aqueous metals in the environment. We critically review 1) the evidence for the mechanistic approach underlying metal bioavailability models; 2) considerations for the use and refinement of bioavaila...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章,评审

    doi:10.1002/etc.4560

    authors: Mebane CA,Chowdhury MJ,De Schamphelaere KAC,Lofts S,Paquin PR,Santore RC,Wood CM

    更新日期:2020-01-01 00:00:00

  • Risk assessment of the National Institute of Standards and Technology petroleum crude oil standard water accommodated fraction: further application of a copepod-based, full life-cycle bioassay.

    abstract::The U.S. National Institute of Standards and Technology (NIST) petroleum crude oil was used to generate NIST water-accommodated hydrocarbon fractions (WAFs) for standardized assessment of crude oil effects on the copepod Amphiascus tenuiremis. Effects were assessed using a 96-well microplate, full life-cycle test. Bri...

    journal_title:Environmental toxicology and chemistry

    pub_type: 杂志文章

    doi:10.1897/05-365r.1

    authors: Bejarano AC,Chandler GT,He L,Cary TL,Ferry JL

    更新日期:2006-07-01 00:00:00