Simulation Modeling to Compare High-Throughput, Low-Iteration Optimization Strategies for Metabolic Engineering.

abstract：:The genus Macrococcus is a close relative of the genus Staphylococcus. Whilst staphylococci are widespread as human pathogens, macrococci have not yet been reported from human clinical specimens. Here we investigated Gram-positive and catalase-positive cocci recovered from human clinical material and identified as Mac...

journal_title：Frontiers in microbiology

authors： Mašlaňová I,Wertheimer Z,Sedláček I,Švec P,Indráková A,Kovařovic V,Schumann P,Spröer C,Králová S,Šedo O,Krištofová L,Vrbovská V,Füzik T,Petráš P,Zdráhal Z,Ružičková V,Doškař J,Pantuček R

更新日期：2018-06-13 00:00:00

abstract：:Arbuscular mycorrhizal fungi (AMF) are obligate root symbionts that can protect their host plant against biotic stress factors such as plant-parasitic nematode (PPN) infection. PPN consist of a wide range of species with different life styles that can cause major damage in many important crops worldwide. Various mecha...

journal_title：Frontiers in microbiology

authors： Schouteden N,De Waele D,Panis B,Vos CM

更新日期：2015-11-17 00:00:00

abstract：:The Prodiginine family consists of primarily red-pigmented tripyrrole secondary metabolites that were first characterized in the Gram-negative bacterial species Serratia marcescens and demonstrates a wide array of biological activities and applications. Derivatives of prodiginine have since been characterized in the m...

journal_title：Frontiers in microbiology

authors： Sakai-Kawada FE,Ip CG,Hagiwara KA,Awaya JD

更新日期：2019-07-24 00:00:00

abstract：:Chitosan is a natural biopolymer from crab shells that is known for its biocompatibility, biodegradability, and bioactivity. In human medicine, chitosan is used as a stabilizer for active ingredients in tablets, and is popular in slimming diets. Due to its low toxicity, it was the first basic substance approved by the...

journal_title：Frontiers in microbiology

authors： Romanazzi G,Feliziani E,Sivakumar D

更新日期：2018-12-04 00:00:00

abstract：:IncI-complex plasmids can be divided into seven subgroups IncI1, IncI2, IncIγ, IncB/O, IncK1, IncK2, and IncZ. In this study, a replicon-based scheme was proposed for typing IncI-complex plasmids into four separately clustering subgroups IncI2, IncI1/B/O, IncIγ/K1 and IncK2/Z, the last three of which were combined fro...

journal_title：Frontiers in microbiology

authors： Zhang D,Zhao Y,Feng J,Hu L,Jiang X,Zhan Z,Yang H,Yang W,Gao B,Wang J,Li J,Yin Z,Zhou D

更新日期：2019-01-29 00:00:00

abstract：:Dengue virus (DENV) infection causes several diseases ranging from dengue fever to life-threatening dengue hemorrhagic fever and dengue shock syndrome characterized by endothelial dysfunction, vascular leakage, and shock. Here, we identify a potential mechanism by which DENV induces tissue injury and vascular leakage ...

journal_title：Frontiers in microbiology

authors： Pan P,Zhang Q,Liu W,Wang W,Yu Z,Lao Z,Zhang W,Shen M,Wan P,Xiao F,Shereen MA,Zhang W,Tan Q,Liu Y,Liu X,Wu K,Liu Y,Li G,Wu J

更新日期：2019-11-22 00:00:00

abstract：:Background: Antimicrobial resistance (AMR) in bacteria is an increasing health concern. The spread of AMR bacteria (AMRB) between animals and humans via the food chain and the exchange of AMR genes requires holistic approaches for risk mitigation. The AMRB exposure of humans via food is currently only poorly understoo...

journal_title：Frontiers in microbiology

authors： Jans C,Sarno E,Collineau L,Meile L,Stärk KDC,Stephan R

更新日期：2018-03-06 00:00:00

abstract：:Lipid droplets (LDs) are endoplasmic reticulum (ER)-related dynamic organelles that store and regulate fatty acids and neutral lipids. They play a central role in cellular energy storage, lipid metabolism and cellular homeostasis. It has become evident that viruses have co-evolved in order to exploit host lipid metabo...

journal_title：Frontiers in microbiology

authors： Zhang J,Lan Y,Sanyal S

更新日期：2017-11-28 00:00:00

abstract：:Similar to other CTX-M family enzymes, KLUC is a recently identified and emerging determinant of cefotaxime resistance that has been recovered from at least three Enterobacteriaceae species, including Kluyvera cryocrescens, Escherichia coli, and Enterobacter cloacae. Whether this extended-spectrum β-lactamase (ESBL) h...

journal_title：Frontiers in microbiology

authors： Li P,Shen K,Zhang Y,Ying J,Zhu T,Liu Y,Xu L,Lin C,Zhang K,Li P,Lu J,Li K,Yi H,Bao Q,Xu T

更新日期：2018-08-15 00:00:00

abstract：:Streptococcus suis serotype 2 (SS2) is an emerging human pathogen worldwide. A large outbreak occurred in the summer of 2005 in China. Serum samples from this outbreak revealed that levels of the main proinflammatory cytokines were significantly higher in patients with streptococcal toxic-shock-like syndrome (STSLS) t...

journal_title：Frontiers in microbiology

authors： Bi L,Pian Y,Chen S,Ren Z,Liu P,Lv Q,Zheng Y,Zhang S,Hao H,Yuan Y,Jiang Y

更新日期：2015-06-26 00:00:00

abstract：:The incidence of non-alcoholic fatty liver disease (NAFLD) is rising annually, and emerging evidence suggests that the gut bacteria plays a causal role in NAFLD. Naringin, a natural flavanone enriched in citrus fruits, is reported to reduce hepatic lipid accumulation, but to date, no investigations have examined wheth...

journal_title：Frontiers in microbiology

authors： Mu H,Zhou Q,Yang R,Zeng J,Li X,Zhang R,Tang W,Li H,Wang S,Shen T,Huang X,Dou L,Dong J

更新日期：2020-11-13 00:00:00

abstract：:Elucidating the succession of soil microbial communities and microbial functions at key plant growth stages is a major goal of microbial ecology research. In this study, we investigated the succession of soil bacteria during four fertilizer treatments (control, NPK, NPK + pig manure, and NPK + straw) and at three cruc...

journal_title：Frontiers in microbiology

authors： Wang W,Luo X,Chen Y,Ye X,Wang H,Cao Z,Ran W,Cui Z

更新日期：2019-03-11 00:00:00

abstract：:The crosstalk between the gut microbiota and immune state of the host is an essential focus in academia and clinics. To explore the dynamic role of the microbiota in response to immune deficiency, we comprehensively assessed the microbiome of 90 mouse fecal samples, across three time points including two immunodeficie...

journal_title：Frontiers in microbiology

authors： Zheng S,Zhao T,Yuan S,Yang L,Ding J,Cui L,Xu M

更新日期：2019-11-01 00:00:00

abstract：:The present study was aimed to determine the prevalence and characteristics of Salmonella isolated from meat samples of commercial broilers (CB) and spent hens (SH). Between March and June 2016, 200 retail raw chicken carcasses (100 from CB and 100 from SH) were obtained from local supermarkets in Tai'an city of China...

journal_title：Frontiers in microbiology

authors： Li S,Zhou Y,Miao Z

更新日期：2017-10-31 00:00:00

abstract：:Cyanobacteria are fascinating photosynthetic prokaryotes that are regarded as the ancestors of the plant chloroplast; the purveyors of oxygen and biomass for the food chain; and promising cell factories for an environmentally friendly production of chemicals. In colonizing most waters and soils of our planet, cyanobac...

journal_title：Frontiers in microbiology

authors： Cassier-Chauvat C,Veaudor T,Chauvat F

更新日期：2016-11-09 00:00:00

abstract：:The claimed role of gene reservoir of coagulase-negative staphylococci (CoNS) could be contradicted by estimates that CRISPR/Cas systems are found in the genomes of 40-50% of bacteria, as these systems interfere with plasmid uptake in staphylococci. To further correlate this role with presence of CRISPR, we analyzed, ...

journal_title：Frontiers in microbiology

authors： Rossi CC,Souza-Silva T,Araújo-Alves AV,Giambiagi-deMarval M

更新日期：2017-08-15 00:00:00

abstract：:Type VI CRISPR-Cas systems contain a single effector nuclease (Cas13) that exclusively targets single-stranded RNA. It remains unknown how these systems acquire spacers. It has been suggested that type VI systems with adaptation modules can acquire spacers from RNA bacteriophages, but sequence similarities suggest tha...

journal_title：Frontiers in microbiology

authors： Toro N,Mestre MR,Martínez-Abarca F,González-Delgado A

更新日期：2019-09-13 00:00:00

abstract：:This study examined fungal diversity and composition in conventional (CM) and desert farming (DE) systems in Oman. Fungal diversity in the rhizosphere of tomato was assessed using 454-pyrosequencing and culture-based techniques. Both techniques produced variable results in terms of fungal diversity, with 25% of the fu...

journal_title：Frontiers in microbiology

authors： Kazerooni EA,Maharachchikumbura SSN,Rethinasamy V,Al-Mahrouqi H,Al-Sadi AM

更新日期：2017-08-02 00:00:00

abstract：:Despite increasing reports of low-level linezolid-resistant enterococci worldwide, the mechanism of this resistance remains poorly understood. Previous transcriptome studies of low-level linezolid-resistant Enterococcus faecalis isolates have demonstrated a number of significantly up-regulated genes potentially involv...

journal_title：Frontiers in microbiology

authors： Yan J,Xia Y,Yang M,Zou J,Chen Y,Zhang D,Ma L

更新日期：2018-07-27 00:00:00

abstract：:A vital function of the cell membrane in all living organism is to maintain the membrane permeability barrier and fluidity. The composition of the phospholipid bilayer is distinct in archaea when compared to bacteria and eukarya. In archaea, isoprenoid hydrocarbon side chains are linked via an ether bond to the sn-gly...

journal_title：Frontiers in microbiology

authors： Jain S,Caforio A,Driessen AJ

更新日期：2014-11-26 00:00:00

abstract：:Salmonella enterica is the leading foodborne pathogen associated with outbreaks involving low-moisture foods (LMFs). However, the genes involved in Salmonella's long-term survival on LMFs remain poorly characterized. In this study, in-shell pistachios were inoculated with Tn5-based mutant libraries of S. Enteritidis P...

journal_title：Frontiers in microbiology

authors： Jayeola V,McClelland M,Porwollik S,Chu W,Farber J,Kathariou S

更新日期：2020-05-15 00:00:00

abstract：:Over the last years the demand for pre-washed, fresh-cut, and minimally-processed (MP) produce has increased. MP fresh vegetable are rapidly spoiled, whereas there is consumers' concern about chemical disinfection treatments such as with chlorine. A promising antimicrobial is reuterin, a broad-spectrum-antimicrobial c...

journal_title：Frontiers in microbiology

authors： Asare PT,Greppi A,Stettler M,Schwab C,Stevens MJA,Lacroix C

更新日期：2018-07-04 00:00:00

abstract：:Brettanomyces yeasts have gained popularity in many sectors of the biotechnological industry, specifically in the field of beer production, but also in wine and ethanol production. Their unique properties enable Brettanomyces to outcompete conventional brewer's yeast in industrially relevant traits such as production ...

journal_title：Frontiers in microbiology

authors： Colomer MS,Chailyan A,Fennessy RT,Olsson KF,Johnsen L,Solodovnikova N,Forster J

更新日期：2020-04-09 00:00:00

abstract：:This study investigated the organohalide-respiring bacteria (OHRB) and the supporting microbial populations operating in a pilot scale plant employing poly-3-hydroxybutyrate (PHB), a biodegradable polymer produced by bacteria from waste streams, for the in situ bioremediation of groundwater contaminated by chlorinated...

journal_title：Frontiers in microbiology

authors： Matturro B,Pierro L,Frascadore E,Petrangeli Papini M,Rossetti S

更新日期：2018-07-24 00:00:00

abstract：:Plant growth and productivity depend on the interactions of the plant with the associated rhizosphere microbes. Rhizosphere protists play a significant role in this respect: considerable efforts have been made in the past to reveal the impact of protist-bacteria interactions on the remobilization of essential nutrient...

journal_title：Frontiers in microbiology

authors： Kuppardt A,Fester T,Härtig C,Chatzinotas A

更新日期：2018-05-03 00:00:00

abstract：:A factorial taxonomic metabarcoding study was carried out to determine the effect of root-knot nematodes (Meloidogyne incognita, RKN) and the nematocide fenamiphos on the rhizosphere microbiome of tomato. Plants inoculated (or not) with RKN second-stage juveniles (J2), and treated (or not) with the nematocide, were te...

journal_title：Frontiers in microbiology

authors： Colagiero M,Rosso LC,Catalano D,Schena L,Ciancio A

更新日期：2020-03-20 00:00:00

abstract：:Polycyclic aromatic hydrocarbons (PAHs) are widespread across the globe mainly due to long-term anthropogenic sources of pollution. The inherent properties of PAHs such as heterocyclic aromatic ring structures, hydrophobicity, and thermostability have made them recalcitrant and highly persistent in the environment. PA...

journal_title：Frontiers in microbiology

authors： Patel AB,Shaikh S,Jain KR,Desai C,Madamwar D

更新日期：2020-11-05 00:00:00

abstract：:The viruses play an important role in limiting bacterial abundance in oceans and, hence, in regulating bacterial biogeochemical functions. A cruise was conducted in September 2005 along a transect in the deep South China Sea (SCS). The results showed the double maxima in the ratio of viral to bacterial abundance (VBR)...

journal_title：Frontiers in microbiology

authors： He L,Yin K,Yuan X

更新日期：2019-07-16 00:00:00

abstract：:Quorum sensing (QS) is a process enabling a bacterial population to communicate via small molecules called autoinducers (AIs). This intercellular communication process allows single cells to synchronize their behavior within a population. The marine bacterium Vibrio harveyi ATCC BAA-1116 channels the information of th...

journal_title：Frontiers in microbiology

authors： Lorenz N,Shin JY,Jung K

更新日期：2017-04-18 00:00:00

abstract：:Heavy metal accumulation in mesquite trees (Prosopis laevigata) growing in aluminum, titanium, chromium and zirconium-polluted soils of a semi-arid region in Mexico was investigated using wavelength dispersive X-ray fluorescence analysis. The results showed that P. laevigata trees can hyper accumulate up to 4100 mg/kg...

journal_title：Frontiers in microbiology

authors： Ramírez V,Baez A,López P,Bustillos R,Villalobos MÁ,Carreño R,Contreras JL,Muñoz-Rojas J,Fuentes LE,Martínez J,Munive JA

更新日期：2019-08-13 00:00:00