Comparative proteomics of respiratory exosomes in cystic fibrosis, primary ciliary dyskinesia and asthma.

Abstract:

:Cystic fibrosis (CF) and primary ciliary dyskinesia (PCD) are pulmonary genetic disorders associated with inflammation and heterogeneous progression of the lung disease. We hypothesized that respiratory exosomes, nanovesicles circulating in the respiratory tract, may be involved in the progression of inflammation-related lung damage. We compared proteomic content of respiratory exosomes isolated from bronchoalveolar lavage fluid in CF and PCD to asthma (A), a condition also associated with inflammation but with less severe lung damage. BALF were obtained from 3 CF, 3 PCD and 6 A patients. Exosomes were isolated from BALF by ultracentrifugations and characterized using immunoelectron microscopy and western-blot. Exosomal protein analysis was performed by high-resolution mass spectrometry using label-free quantification. Exosome enrichment was validated by electron microscopy and immunodetection of CD9, CD63 and ALIX. Mass spectrometry analysis allowed the quantification of 665 proteins, of which 14 were statistically differential according to the disease. PCD and CF exosomes contained higher levels of antioxidant proteins (Superoxide-dismutase, Glutathione peroxidase-3, Peroxiredoxin-5) and proteins involved in leukocyte chemotaxis. All these proteins are known activators of the NF-KappaB pathway. Our results suggest that respiratory exosomes are involved in the pro-inflammatory propagation during the extension of CF or PCD lung diseases. SIGNIFICANCE:The mechanism of local propagation of lung disease in cystic fibrosis (CF) and primary ciliary dyskinesia (PCD) is not clearly understood. Differential Proteomic profiles of exosomes isolated from BAL from CF, PCD and asthmatic patients suggest that they carry pro-inflammatory proteins that may be involved in the progression of lung damage.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Rollet-Cohen V,Bourderioux M,Lipecka J,Chhuon C,Jung VA,Mesbahi M,Nguyen-Khoa T,Guérin-Pfyffer S,Schmitt A,Edelman A,Sermet-Gaudelus I,Guerrera IC

doi

10.1016/j.jprot.2018.07.001

subject

Has Abstract

pub_date

2018-08-15 00:00:00

pages

1-7

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(18)30271-9

journal_volume

185

pub_type

杂志文章
  • ITRAQ-based quantitative proteomic analysis of MG63 in response to HIF-1α inducers.

    abstract::Non-healing fractures constitute a serious clinical problem. HIF-1α is a crucial regulator in response to hypoxia and is proven to be pivotal in bone growth; however, the mechanism still needs further research. In this study, iTRAQ was used to study the effects of two HIF-1α inducers on the expression of proteins in M...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103558

    authors: Chen C,Hao X,Geng Z,Wang Z

    更新日期:2020-01-16 00:00:00

  • Verification of a biomarker discovery approach for detection of Down syndrome in amniotic fluid via multiplex selected reaction monitoring (SRM) assay.

    abstract::Prenatal screening test for Down syndrome (DS) can be improved by discovery of novel biomarkers. A multiplex selected reaction monitoring (SRM) assay was developed to test previously identified thirteen candidate proteins in amniotic fluid (AF). One unique peptide was selected for each protein based on discovery data,...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.05.025

    authors: Cho CK,Drabovich AP,Batruch I,Diamandis EP

    更新日期:2011-09-06 00:00:00

  • Mature forms of the major seed storage albumins in sunflower: A mass spectrometric approach.

    abstract:UNLABELLED:Seed storage albumins are abundant, water-soluble proteins that are degraded to provide critical nutrients for the germinating seedling. It has been established that the sunflower albumins encoded by SEED STORAGE ALBUMIN 2 (SESA2), SESA20 and SESA3 are the major components of the albumin-rich fraction of the...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.05.004

    authors: Franke B,Colgrave ML,Mylne JS,Rosengren KJ

    更新日期:2016-09-16 00:00:00

  • Two-dimensional gel electrophoresis of wool intermediate filament proteins.

    abstract::Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) methods have been used to provide high-resolution separation of wool intermediate filament proteins (IFPs). An improved method of extraction was developed based on a previously published method. The improved method for extraction eliminates the use of dialys...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.06.008

    authors: Paton LN,Gerrard JA,Bryson WG

    更新日期:2008-10-07 00:00:00

  • Proteomic analysis of liver in diet-induced Hyperlipidemic mice under Fructus Rosa roxburghii action.

    abstract::Fructus Rosae Roxburghii (FRR) has been considered as edible and medicinal fruit possessing antiatherosclerotic effect, but the mechanism is still unclear. HLP is material basis for AS formation. Under FRR action, TC, TG, LDL, HDL and ASI in serum were regulated to control level. Differentially expressed proteins in l...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103982

    authors: Song P,Shen X

    更新日期:2021-01-06 00:00:00

  • Potential mechanisms of calcium dependent regulation of the mammalian cell cycle revealed by comprehensive unbiased label-free nLC-MS/MS quantitative proteomics.

    abstract::Calcium (Ca2+) controls progression through the mammalian cell cycle by engaging a diverse range of molecular pathways. While the essential role of spatio-temporal Ca2+ signalling in the cell cycle is well established, the precise mechanisms by which it regulates cell cycle entry and progression through G1 are not par...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.08.006

    authors: Kwasnik A,von Kriegsheim A,Irving A,Pennington SR

    更新日期:2018-01-06 00:00:00

  • A comparative proteomic approach to better define Deinococcus nucleoid specificities.

    abstract::Compared to radiation-sensitive bacteria, the nucleoids of radiation-resistant Deinococcus species show a higher degree of compaction. Such a condensed nucleoid may contribute to the extreme radiation resistance of Deinococcus by limiting dispersion of radiation-induced DNA fragments. Architectural proteins may play a...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.03.002

    authors: Toueille M,Mirabella B,Guérin P,Bouthier de la Tour C,Boisnard S,Nguyen HH,Blanchard L,Servant P,de Groot A,Sommer S,Armengaud J

    更新日期:2012-05-17 00:00:00

  • Highly reproducible improved label-free quantitative analysis of cellular phosphoproteome by optimization of LC-MS/MS gradient and analytical column construction.

    abstract::Expanding the sequencing depth of the peptides with a statistically significant quantitative change derived from a biological stimulation is critical. Here we demonstrate that optimization of LC gradient and analytical column construction can reveal over 30,000 unique peptides and 23,000 phosphopeptides at high confid...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.06.013

    authors: Ahsan N,Belmont J,Chen Z,Clifton JG,Salomon AR

    更新日期:2017-08-08 00:00:00

  • Comparative evaluation of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) and high-pH reversed phase (Hp-RP) chromatography in profiling of rat kidney proteome.

    abstract:UNLABELLED:ERLIC and high-pH RP (Hp-RP) have been reported to be promising alternatives to strong cation exchange (SCX) in proteome fractionation. Here we compared the performance of ERLIC, concatenated ERLIC and concatenated Hp-RP in proteome profiling. The protein identification is comparable in these three strategie...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.02.008

    authors: Hao P,Ren Y,Dutta B,Sze SK

    更新日期:2013-04-26 00:00:00

  • A proteomic analysis of p53-independent induction of apoptosis by bortezomib in 4T1 breast cancer cell line.

    abstract:UNLABELLED:The 26S proteasome is a proteolytic enzyme found in both cytoplasm and nucleus. In this study, we examined the differential expression of proteasome inhibitor bortezomib-induced proteins in p53-deficient 4T1 cells. It was found that GRP78 and TCEB2 were over-expressed in response to treatment with bortezomib...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.09.010

    authors: Yerlikaya A,Okur E,Baykal AT,Acılan C,Boyacı I,Ulukaya E

    更新日期:2015-01-15 00:00:00

  • Neuropeptide alterations in the tree shrew hypothalamus during volatile anesthesia.

    abstract::Neuropeptides are critical signaling molecules, involved in the regulation of diverse physiological processes including energy metabolism, pain perception and brain cognitive state. Prolonged general anesthesia has an impact on many of these processes, but the regulation of peptides by general anesthetics is poorly un...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.11.002

    authors: Fouillen L,Petruzziello F,Veit J,Bhattacharyya A,Kretz R,Rainer G,Zhang X

    更新日期:2013-03-27 00:00:00

  • Effect of dietary fiber/starch balance on the cecal proteome of growing rabbits.

    abstract:UNLABELLED:Dietary fiber/starch imbalance can lead to diarrhea in rabbits. However, the underlying molecular mechanisms are largely unknown, and this is the first study on the proteome profile of the cecal tissue of diarrheic rabbits. In this study, one group of weanling rabbits was fed a high fiber/starch diet (contro...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.03.019

    authors: Zhu Y,Wang C,Wang X,Li B,Li F

    更新日期:2014-05-30 00:00:00

  • Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri.

    abstract::Ostreococcus tauri is a unicellular green alga and amongst the smallest and simplest free-living eukaryotes. The O. tauri genome sequence was determined in 2006. Molecular, physiological and taxonomic data that has been generated since then highlight its potential as a simple model species for algae and plants. Howeve...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.05.028

    authors: Le Bihan T,Martin SF,Chirnside ES,van Ooijen G,Barrios-Llerena ME,O'Neill JS,Shliaha PV,Kerr LE,Millar AJ

    更新日期:2011-09-06 00:00:00

  • Comparative phosphoproteomic analysis of intestinal phosphorylated proteins in active versus aestivating sea cucumbers.

    abstract:UNLABELLED:The sea cucumber Apostichopus japonicus is becoming an excellent model marine invertebrate for studies of environmentally-induced aestivation. Reversible protein phosphorylation as a regulatory mechanism in aestivation is known for some terrestrial aestivators but has never before been documented in sea cucu...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.09.016

    authors: Chen M,Zhu A,Storey KB

    更新日期:2016-03-01 00:00:00

  • Searching for specific motifs in affinity capture in proteome analysis.

    abstract::In analysing the red blood cell cytoplasmic proteome, in search for low abundance proteins, 15 amino acid (AA; Arg, Asn, Asp, Gln, Gly, His, Ile, Lys, Phe, Pro, Ser, Thr, Trp, Tyr, and Val) probes, used individually, captured a total of 787 unique gene products. Of those, 76 were found to be the common catch of all AA...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2009.04.001

    authors: Masseroli M,Bachi A,Boschetti E,Righetti PG

    更新日期:2009-07-21 00:00:00

  • Proteolytic events are relevant cellular responses during nervous system regeneration of the starfish Marthasterias glacialis.

    abstract:UNLABELLED:The molecular pathways that trigger the amazing intrinsic regenerative ability of echinoderm nervous system are still unknown. In order to approach this subject, a 2D-DIGE proteomic strategy was used, to screen proteome changes during neuronal regeneration in vivo, using starfish (Asteroidea, Echinodermata) ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.12.012

    authors: Ferraz Franco C,Santos R,Varela Coelho A

    更新日期:2014-03-17 00:00:00

  • The identification and characterization of epitopes in the 30-34 kDa Trypanosoma cruzi proteins recognized by antibodies in the serum samples of chagasic patients.

    abstract::Trypanosoma cruzi proteins with molecular weight between 30 and 34 kDa have shown high reactivity in western blot assays with serum samples from chagasic individuals. However, in-depth analysis of the constituents of these protein fractions has not been performed. This is the first report of an immunoaffinity proteomi...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.11.001

    authors: Verissimo da Costa GC,Lery LM,da Silva ML,Moura H,Peralta RH,von Krüger WM,Bisch PM,Barr JR,Peralta JM

    更新日期:2013-03-27 00:00:00

  • Comprehensive glycomics comparison between colon cancer cell cultures and tumours: implications for biomarker studies.

    abstract:UNLABELLED:Altered glycosylation is commonly observed in colorectal cancer. In vitro models are frequently used to study this cancer but little is known about the differences that may exist between these model cell systems and tumour tissue. We have compared the membrane protein glycosylation of five colorectal cancer ...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2014.05.002

    authors: Chik JH,Zhou J,Moh ES,Christopherson R,Clarke SJ,Molloy MP,Packer NH

    更新日期:2014-08-28 00:00:00

  • Differential proteome analysis of a selected bacterial strain isolated from a high background radiation area in response to radium stress.

    abstract::The present study describes the response of a bacterial strain, isolated from a hot spring in an area with the highest levels of natural radiation, under radium ((226)Ra) stress. The bacterium has been characterized as a novel and efficient radium biosorbent and identified as a variant of Serratia marcescens by bioche...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.05.020

    authors: Zakeri F,Sadeghizadeh M,Kardan MR,Shahbani Zahiri H,Ahmadian G,Masoumi F,Sharafi H,Rigi G,Vali H,Akbari Noghabi K

    更新日期:2012-08-03 00:00:00

  • Glycation of glucose sensitive lysine residues K36, K438 and K549 of albumin is associated with prediabetes.

    abstract::Prediabetes is a risk factor for the development of diabetes. Early diagnosis of prediabetes may prevent the onset and progression of diabetes and its associated complications. Therefore, this study aimed at the identification of novel markers for efficient prediction of prediabetes. In this pursuit, we have evaluated...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103481

    authors: Rathore R,Sonwane BP,Jagadeeshaprasad MG,Kahar S,Santhakumari B,Unnikrishnan AG,Kulkarni MJ

    更新日期:2019-09-30 00:00:00

  • Characterizations and proteome analysis of platelet-free plasma-derived microparticles in β-thalassemia/hemoglobin E patients.

    abstract::Aggregatability and oxidative damage of red blood cells (RBCs), platelet activation and increased amount of blood cells-derived microparticles (MPs) are thought to be the etiologies for the thrombotic risk in thalassemia, but with unclear mechanisms. Here we report cellular origins and increases in number, oxidative s...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2012.06.004

    authors: Chaichompoo P,Kumya P,Khowawisetsut L,Chiangjong W,Chaiyarit S,Pongsakul N,Sirithanaratanakul N,Fucharoen S,Thongboonkerd V,Pattanapanyasat K

    更新日期:2012-12-05 00:00:00

  • Proteomic analysis of ontogenetic and diet-related changes in venom composition of juvenile and adult Dusky Pigmy rattlesnakes (Sistrurus miliarius barbouri).

    abstract::Snake venom proteins show high levels of variation at the level of the individual yet the environmental and molecular mechanisms that generate this diversity remain unclear. Here we report the results of a controlled feeding experiment combined with proteomic analyses of periodically collected venom samples to assess ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.06.013

    authors: Gibbs HL,Sanz L,Chiucchi JE,Farrell TM,Calvete JJ

    更新日期:2011-09-06 00:00:00

  • Vitamin D binding protein isoforms as candidate predictors of disease extension in childhood arthritis.

    abstract:INTRODUCTION:Juvenile idiopathic arthritis (JIA) comprises a poorly understood group of chronic autoimmune diseases with variable clinical outcomes. We investigated whether the synovial fluid (SF) proteome could distinguish a subset of patients in whom disease extends to affect a large number of joints. METHODS:SF sam...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.06.024

    authors: Gibson DS,Newell K,Evans AN,Finnegan S,Manning G,Scaife C,McAllister C,Pennington SR,Duncan MW,Moore TL,Rooney ME

    更新日期:2012-09-18 00:00:00

  • Determination of the protein expression profiles of breast cancer cell lines by quantitative proteomics using iTRAQ labelling and tandem mass spectrometry.

    abstract:UNLABELLED:Breast cancer is the principal cancer in women worldwide. Although there are serum tumor markers such as CEA and HER2, they are detected in advanced stages of the disease and used as progression and recurrence markers. Therefore, there is a necessity for the identification of new markers that might lead to a...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.04.018

    authors: Calderón-González KG,Valero Rustarazo ML,Labra-Barrios ML,Bazán-Méndez CI,Tavera-Tapia A,Herrera-Aguirre ME,Sánchez del Pino MM,Gallegos-Pérez JL,González-Márquez H,Hernández-Hernández JM,León-Ávila G,Rodríguez-Cuevas S,Guisa-Hoh

    更新日期:2015-06-21 00:00:00

  • Placental growth factor regulates the pentose phosphate pathway and antioxidant defense systems in human retinal endothelial cells.

    abstract::The molecular mechanisms whereby placental growth factor (PlGF) mediates its effects in nonproliferative diabetic retinopathy (DR) are unknown. To better understand the role of PlGF in DR, we used tandem mass tags (TMT)-labeled quantitative proteomics to human retinal endothelial cells (HRECs), treated anti-PlGF antib...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103682

    authors: Saddala MS,Lennikov A,Huang H

    更新日期:2020-04-15 00:00:00

  • Unveiling alterative splice diversity from human oligodendrocyte proteome data.

    abstract::Oligodendrocytes produce and maintain the myelin sheath of axons in the central nervous system. Because misassembled myelin sheaths have been associated with brain disorders such as multiple sclerosis and schizophrenia, recent advances have been made towards the description of the oligodendrocyte proteome. The identif...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.05.023

    authors: Tavares R,Wajnberg G,Scherer NM,Pauletti BA,Cassoli JS,Ferreira CG,Paes Leme AF,de Araujo-Souza PS,Martins-de-Souza D,Passetti F

    更新日期:2017-01-16 00:00:00

  • Charting the cellular and extracellular proteome analysis of Brevibacterium linens DSM 20158 with unsequenced genome by mass spectrometry-driven sequence similarity searches.

    abstract:UNLABELLED:Brevibacterium linens DSM 20158 is an industrially important actinobacterium which is well-known for the production of amino acids and enzymes. However, as this strain has an unsequenced genome, there is no detailed information regarding its proteome although another strain of this microbe, BL2, has a shotgu...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.02.029

    authors: Shabbiri K,Botting CH,Adnan A,Fuszard M

    更新日期:2013-05-27 00:00:00

  • Deep learning embedder method and tool for mass spectra similarity search.

    abstract::Spectral similarity calculation is widely used in protein identification tools and mass spectra clustering algorithms while comparing theoretical or experimental spectra. The performance of the spectral similarity calculation plays an important role in these tools and algorithms especially in the analysis of large-sca...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104070

    authors: Qin C,Luo X,Deng C,Shu K,Zhu W,Griss J,Hermjakob H,Bai M,Perez-Riverol Y

    更新日期:2021-02-10 00:00:00

  • TMT-labelled quantitative proteomic analysis to identify the proteins underlying radiation-induced colorectal fibrosis in rats.

    abstract::Radiation-induced colorectal fibrosis (RICF) after pelvic radiotherapy can lead to stenosis and affect patients' quality of life. However, to date, few effective prevention and treatment methods for RICF have been implemented in clinical practice. Therefore, there is a strong need to investigate the molecular events u...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103801

    authors: Huang S,Wang X,Sun Y,Lu X,Jiang W,Chen Z,Huang Y,Chi P

    更新日期:2020-07-15 00:00:00

  • Identification of plasma-responsive outer membrane proteins and their vaccine potential in Edwardsiella tarda using proteomic approach.

    abstract::We have used differential sub-proteomic methodologies to detect Edwardsiella tarda outer membrane (OM) protein expression regulation during interaction with fish and human plasma, which is the critical step of the bacterial invasion internal organs via blood circulation. Seven and nine OM proteins were differentially ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.11.001

    authors: Wang C,Liu Y,Li H,Xu WJ,Zhang H,Peng XX

    更新日期:2012-02-02 00:00:00