Intramolecular interactions within the human immunodeficiency virus-1 gp41 loop region and their involvement in lipid merging.

Abstract:

:The human immunodeficiency virus utilizes its gp41 fusion protein to mediate virus-cell membrane fusion. The conserved disulfide loop region in the gp41 hairpin conformation reverses the protein chain, such that the N-terminal heptad repeat and the C-terminal heptad repeat regions interact to form the six-helix bundle. Hence, it is conceivable that the sequential folded N- and C-terminal parts of the loop region also interact. We show that the N- and C-terminal parts of the loop preferably form disulfide-bonded heterodimers with slow oxidation kinetics. Furthermore, when the two parts were linked to a single polypeptide to form the full-length loop, only an intramolecular disulfide-bonded loop was formed. Fluorescence studies revealed that an interaction takes place between the N- and C-terminal parts of the loop in solution, which was sustained in membranes. Functionally, only a combination of the N- and C-loop parts induced lipid mixing of model liposomes, the level of which increased 8-fold when they were connected to a single polypeptide chain. In both cases, the activity was independent of the oxidation state of the cysteines. Overall, the data (i) provide evidence of a specific interaction between the N- and C-terminal parts of the loop, which can further stabilize gp41 hairpin conformation, and (ii) suggest that the interaction between the N- and C-terminal parts of the loop is sufficient to induce lipid merging without forming a disulfide bond.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Ashkenazi A,Merklinger E,Shai Y

doi

10.1021/bi300868f

subject

Has Abstract

pub_date

2012-09-04 00:00:00

pages

6981-9

issue

35

eissn

0006-2960

issn

1520-4995

journal_volume

51

pub_type

杂志文章
  • Dynamics of light-induced activation in the PAS domain proteins LOV2 and PYP probed by time-resolved tryptophan fluorescence.

    abstract::Light-induced activation of the LOV2-Jα domain of the photoreceptor phototropin from oat is believed to involve the detachment of the Jα helix from the central β-sheet and its subsequent unfolding. The dynamics of these conformational changes were monitored by time-resolved emission spectroscopy with 100 ns time resol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101413v

    authors: Hoersch D,Bolourchian F,Otto H,Heyn MP,Bogomolni RA

    更新日期:2010-12-28 00:00:00

  • Mechanism of bacteriophage T4 DNA holoenzyme assembly: the 44/62 protein acts as a molecular motor.

    abstract::The role of ATP hydrolysis by the 44/62 protein in formation of the stable holoenzyme DNA replication complex has been further elucidated by specifically examining the role that the 44/62 protein plays in loading the 45 protein onto the DNA substrate. A stable phospho-45 protein or phosphorylated holoenzyme complex wa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962139l

    authors: Berdis AJ,Benkovic SJ

    更新日期:1997-03-11 00:00:00

  • Solution Nuclear Magnetic Resonance Studies of Sterol Carrier Protein 2 Like 2 (SCP2L2) Reveal the Insecticide Specific Structural Characteristics of SCP2 Proteins in Aedes aegypti Mosquitoes.

    abstract::Sterol carrier protein 2 like 2 from Aedes aegypti (AeSCP2L2) plays an important role in lipid transport in mosquitoes for its routine metabolic processes. Repeated unsuccessful attempts to crystallize ligand free SCP2L2 prompted us to undertake nuclear magnetic resonance (NMR) spectroscopy to determine its three-dime...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00322

    authors: Singarapu KK,Ahuja A,Potula PR,Ummanni R

    更新日期:2016-09-06 00:00:00

  • Complementary DNA cloning and kinetic characterization of a novel intracellular serine proteinase inhibitor: mechanism of action with trypsin and factor Xa as model proteinases.

    abstract::The full-length cDNA encoding a novel human intracellular serine proteinase inhibitor has been sequenced and found to encode a 376 amino acid protein (M(r) approximately 42.5K) that we designate as cytoplasmic antiproteinase. Analysis of the primary structure revealed that the cytoplasmic antiproteinase has the majori...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00177a037

    authors: Morgenstern KA,Sprecher C,Holth L,Foster D,Grant FJ,Ching A,Kisiel W

    更新日期:1994-03-22 00:00:00

  • Electronic structure studies of the adenosylcobalamin cofactor in glutamate mutase.

    abstract::Glutamate mutase (GM) is a cobalamin-dependent enzyme that catalyzes the reversible interconversion of L-glutamate and L-threo-3-methylaspartate via a radical-based mechanism. To initiate catalysis, the 5'-deoxyadenosylcobalamin (AdoCbl) cofactor's Co-C bond is cleaved homolytically to generate an adenosyl radical and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051094y

    authors: Brooks AJ,Fox CC,Marsh EN,Vlasie M,Banerjee R,Brunold TC

    更新日期:2005-11-22 00:00:00

  • Mn2+ is a native metal ion activator for bacteriophage lambda protein phosphatase.

    abstract::Bacteriophage lambda protein phosphatase (lambdaPP) is a member of a large family of metal-containing phosphoesterases, including purple acid phosphatase, protein serine/threonine phosphatases, 5'-nucleotidase, and DNA repair enzymes such as Mre11. lambdaPP can be activated several-fold by various divalent metal ions,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026317o

    authors: Reiter TA,Reiter NJ,Rusnak F

    更新日期:2002-12-24 00:00:00

  • Light-induced high-spin signals from the oxygen evolving center in Ca2+-depleted photosystem II studied by dual mode electron paramagnetic resonance spectroscopy.

    abstract::Illuminating Ca2+-depleted photosystem (PS) II membranes generated two new EPR signals at g = 11 and 15 by perpendicular and parallel polarization modes, respectively. Two turnovers of the oxygen evolving center (OEC) beyond the modified S2' state are required for the appearance of these signals. The formation of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972471c

    authors: Mino H,Kawamori A,Matsukawa T,Ono T

    更新日期:1998-03-03 00:00:00

  • NMR analysis of covalent intermediates in thiamin diphosphate enzymes.

    abstract::Enzymic catalysis proceeds via intermediates formed in the course of substrate conversion. Here, we directly detect key intermediates in thiamin diphosphate (ThDP)-dependent enzymes during catalysis using (1)H NMR spectroscopy. The quantitative analysis of the relative intermediate concentrations allows the determinat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034465o

    authors: Tittmann K,Golbik R,Uhlemann K,Khailova L,Schneider G,Patel M,Jordan F,Chipman DM,Duggleby RG,Hübner G

    更新日期:2003-07-08 00:00:00

  • Ionic-strength-dependent effects in protein folding: analysis of rate equilibrium free-energy relationships and their interpretation.

    abstract::The traditional approach to studying protein folding involves applying a perturbation, usually denaturant or mutation, and determining the effect upon the free energy of folding, DeltaG0, and the activation free energy, DeltaG(not equal). Data collected as a function of the perturbation can be used to construct rate e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701645g

    authors: Song B,Cho JH,Raleigh DP

    更新日期:2007-12-11 00:00:00

  • Heterogeneous glycosylation of immunoglobulin E constructs characterized by top-down high-resolution 2-D mass spectrometry.

    abstract::Posttranslational glycosylation is critical for biological function of many proteins, but its structural characterization is complicated by natural heterogeneity, multiple glycosylation sites, and different forms. Here, a top-down mass spectrometry (MS) characterization is applied to three constructs of the Fc segment...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9919091

    authors: Fridriksson EK,Beavil A,Holowka D,Gould HJ,Baird B,McLafferty FW

    更新日期:2000-03-28 00:00:00

  • Preferred heme binding sites of histidine-rich glycoprotein.

    abstract::The heme binding sites of rabbit histidine-rich glycoprotein (HRG), 94 kDa, were studied with rose bengal (RB), a fluorescein derivative that associates with histidine residues. Difference absorbance spectra indicate that HRG binds RB at two thermodynamically preferred sites (Kd approximately 2 microM) that are spectr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00342a034

    authors: Burch MK,Morgan WT

    更新日期:1985-10-08 00:00:00

  • The p73 DNA binding domain displays enhanced stability relative to its homologue, the tumor suppressor p53, and exhibits cooperative DNA binding.

    abstract::The p53 protein family is involved in the control of an intricate network of genes implicated in cell cycle, through to germ line integrity and development. Although the role of p53 is well-established, the intrinsic nature of its homologue p73 has yet to be fully elucidated. Here, the biochemical characterization and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7023207

    authors: Patel S,Bui TT,Drake AF,Fraternali F,Nikolova PV

    更新日期:2008-03-11 00:00:00

  • Complex of human apolipoprotein C-1 with phospholipid: thermodynamic or kinetic stability?

    abstract::Thermal unfolding of discoidal complexes of apolipoprotein (apo) C-1 with dimyristoyl phosphatidylcholine (DMPC) reveals a novel mechanism of lipoprotein stabilization that is based on kinetics rather than thermodynamics. Far-UV CD melting curves recorded at several heating/cooling rates from 0.047 to 1.34 K/min show ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025588w

    authors: Gursky O,Ranjana,Gantz DL

    更新日期:2002-06-11 00:00:00

  • Single-strand and double-strand deoxyribonucleic acid breaks produced by several bleomycin analogues.

    abstract::Production of single-strand breaks (ssb) and double-strand breaks (dsb) of PM2 phage DNA by several structurally related bleomycin (BLM) analogues was studied by gel electrophoresis. BLM A2 and BLM B2 produced a comparable extent of dsb. In various experiments, BLM A2 and BLM B2, at 22-41 ng/mL, degraded 50% of the fo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00505a001

    authors: Huang CH,Mirabelli CK,Jan Y,Crooke ST

    更新日期:1981-01-20 00:00:00

  • Altering the intermediate in the equilibrium folding of unmodified yeast tRNAPhe with monovalent and divalent cations.

    abstract::The isothermal equilibrium folding of the unmodified yeast tRNA(Phe) is studied as a function of Na(+), Mg(2+), and urea concentration with hydroxyl radical protection, circular dichroism, and diethyl pyrocarbonate (DEPC) modification. These assays indicate that this tRNA folds in Na(+) alone. Similar to folding in Mg...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002646+

    authors: Shelton VM,Sosnick TR,Pan T

    更新日期:2001-03-27 00:00:00

  • Hydrogen exchange kinetics changes upon formation of the soybean trypsin inhibitor-trypsin complex.

    abstract::The hydrogen exchange kinetics of the complex of trypsin-soybean trypsin inhibitor (Kunitz) have been compared to the calculated sum of the exchange kinetics for the inhibitor and trypsin measured separately. The exchange rates observed for the complex are substantially less than the sum of the exchange rates in the t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00686a020

    authors: Woodward CK,Ellis LM

    更新日期:1975-07-29 00:00:00

  • A kinetic and allosteric model for the acetylcholine transporter-vesamicol receptor in synaptic vesicles.

    abstract::The ligand binding relationship between the acetylcholine transporter (AcChT) and the vesamicol receptor (VR) and the kinetics of active transport were studied in synaptic vesicles purified from the Torpedo electric organ using analogues of AcCh and vesamicol. Methoxyvesamicol, which should exhibit better equilibratio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00140a010

    authors: Bahr BA,Clarkson ED,Rogers GA,Noremberg K,Parsons SM

    更新日期:1992-06-30 00:00:00

  • Fibronectin Conformation and Assembly: Analysis of Fibronectin Deletion Mutants and Fibronectin Glomerulopathy (GFND) Mutants.

    abstract::To study fibronectin (FN) conformation and assembly, we generated several deletion mutants: FNΔI1-5, FNΔIII1-3, FNΔIII4-8, and FNΔIII11-14. A monomeric form, FNmono, which lacked the C-terminal dimerization region, was also created. FNtnA-D was generated by swapping FNIII domains 1-8 in FNΔIII11-14 with seven FNIII do...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00589

    authors: Ohashi T,Lemmon CA,Erickson HP

    更新日期:2017-08-29 00:00:00

  • Structural basis for light activation of a chloroplast enzyme: the structure of sorghum NADP-malate dehydrogenase in its oxidized form.

    abstract::Some key chloroplast enzymes are activated by light via a ferredoxin-thioredoxin reduction system which reduces disulfide bridges in the enzymes. We describe for the first time the structural basis for the redox activation of a chloroplast enzyme, the NADP-dependent malate dehydrogenase (MDH) from Sorghum vulgare whos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982876c

    authors: Johansson K,Ramaswamy S,Saarinen M,Lemaire-Chamley M,Issakidis-Bourguet E,Miginiac-Maslow M,Eklund H

    更新日期:1999-04-06 00:00:00

  • Evidence for retro-translocation of pokeweed antiviral protein from endoplasmic reticulum into cytosol and separation of its activity on ribosomes from its activity on capped RNA.

    abstract::Pokeweed antiviral protein (PAP) is a single-chain ribosome inactivating protein (RIP) that binds to ribosomes and depurinates the highly conserved alpha-sarcin/ricin loop (SRL) of the large subunit rRNA. Catalytic depurination of a specific adenine has been proposed to result in translation arrest and cytotoxicity. H...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048188c

    authors: Parikh BA,Baykal U,Di R,Tumer NE

    更新日期:2005-02-22 00:00:00

  • Femtosecond time-resolved absorption spectroscopy of main-form and high-salt peridinin-chlorophyll a-proteins at low temperatures.

    abstract::Steady-state and femtosecond time-resolved optical methods have been used to compare the spectroscopic features and energy transfer dynamics of two systematically different light-harvesting complexes from the dinoflagellate Amphidinium carterae: main-form (MFPCP) and high-salt (HSPCP) peridinin-chlorophyll a-proteins....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061217u

    authors: Ilagan RP,Koscielecki JF,Hiller RG,Sharples FP,Gibson GN,Birge RR,Frank HA

    更新日期:2006-11-28 00:00:00

  • Thermodynamic consequences of bipartite immunity protein binding to the ribosomal ribonuclease colicin E3.

    abstract::Colicin E3 is a 60 kDa, multidomain protein antibiotic that targets its ribonuclease activity to an essential region of the 16S ribosomal RNA of Escherichia coli. To prevent suicide of the producing cell, synthesis of the toxin is accompanied by the production of a 10 kDa immunity protein (Im3) that binds strongly to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0273720

    authors: Walker D,Moore GR,James R,Kleanthous C

    更新日期:2003-04-15 00:00:00

  • Conformational dynamics of free and catalytically active thermolysin are indistinguishable by hydrogen/deuterium exchange mass spectrometry.

    abstract::Conformational dynamics are thought to be a prerequisite for the catalytic activity of enzymes. However, the exact relationship between structural fluctuations and function is not well understood. In this work hydrogen/deuterium exchange (HDX) and electrospray ionization mass spectrometry (ESI-MS) are used for explori...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800463q

    authors: Liu YH,Konermann L

    更新日期:2008-06-17 00:00:00

  • Investigation of the regiospecificity and stereospecificity of proton transfer in the yeast inorganic pyrophosphatase catalyzed reaction.

    abstract::The regiospecificity and stereospecificity of proton transfer in the yeast inorganic pyrophosphatase (PPase) catalyzed hydrolysis of P1,P2-bidentate Mg(H2O)4(PPi)2- were probed with exchange-inert metal complexes of imidodiphosphate (PNP) and thiopyrophosphate (PPS). PPase was unable to catalyze the hydrolysis of Mg(H...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00364a035

    authors: Lin I,Knight WB,Hsueh A,Dunaway-Mariano D

    更新日期:1986-08-12 00:00:00

  • Interaction of actin with N-ethylmaleimide modified heavy meromyosin in the presence and absence of adenosine triphosphate.

    abstract::N-Ethylmaleimide modified heavy meromyosin in only 3-fold activated by actin rather than 200-fold as is normal heavy meromyosin (Silverman, R., Eisenberg, E., and Kielley, W. W. (1972), Nature (London) 240, 207). Ultracentrifuge studies demonstrated that in the absence of ATP the N-ethylmaleimide modified heavy merom...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00688a020

    authors: Mulhern S,Eisenberg E,Kielley WW

    更新日期:1975-08-26 00:00:00

  • Consequences of single-site mutations in the intestinal fatty acid binding protein.

    abstract::The intestinal fatty acid binding protein (IFABP) is a small (15 kDa) protein consisting mostly of 10 antiparallel beta-strands (A-J) and a small helical region that serves as a portal for the ligand. Two beta-sheet structures (strands A-E and F-J) surround a cavity into which the ligand binds. In this work, we invest...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0301688

    authors: Rajabzadeh M,Kao J,Frieden C

    更新日期:2003-10-28 00:00:00

  • Role of the C-terminus of the high-conductance calcium-activated potassium channel in channel structure and function.

    abstract::The role of ion channels in cell physiology is regulated by processes occurring after protein biosynthesis, which are critical for both channel function and targeting of channels to appropriate cell compartments. Here we apply biochemical and electrophysiological methods to investigate the role of the high-conductance...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050527u

    authors: Schmalhofer WA,Sanchez M,Dai G,Dewan A,Secades L,Hanner M,Knaus HG,McManus OB,Kohler M,Kaczorowski GJ,Garcia ML

    更新日期:2005-08-02 00:00:00

  • Cationic copper(II) porphyrins intercalate into domains of double-stranded RNA.

    abstract::A cationic, copper(II)-containing ligand, derived from bulky 5,10,15,20-tetrakis(N-methylpyridinium-4-yl)porphyrin, Cu(T4), and two sterically friendlier forms, [trans-5,15-di(N-methylpyridinium-4-yl)porphyrinato]copper(II), Cu(tD4), and [cis-5,10-di(N-methylpyridinium-4-yl)porphyrinato]copper(II), Cu(cD4), bind to DN...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300828z

    authors: Briggs BN,Gaier AJ,Fanwick PE,Dogutan DK,McMillin DR

    更新日期:2012-09-25 00:00:00

  • Benzo[a]yrenedione/benzo[a]pyrenediol oxidation-reduction couples and the generation of reactive reduced molecular oxygen.

    abstract::The ability of the isomeric quinone metabolites of benzo[a]pyrene, benzo[a]pyrene-6,12-dione, benzo[a]pyrene-1,6-dione, and benzo[a]pyrene-3,6-dione to undergo reversible, univalent oxidation-reduction cycles involving the corresponding benzo[a]pyrenediols and intermediate semiquinone radicals has been characterized. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00626a035

    authors: Lorentzen RJ,Ts'o PO

    更新日期:1977-04-05 00:00:00

  • Mechanism and role of cooperative binding of bacteriophage fd gene 5 protein to single-stranded deoxyribonucleic acid.

    abstract::The highly cooperative binding of fd gene 5 to single-stranded DNA was studied kinetically by rapid photo-cross-linking and stopped-flow UV absorption measurements. The observed change in absorbance was shown to be due to the binding by direct evidence of rapid photo-cross-linking of the bound proteins to fd DNA. The ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00294a028

    authors: Shimamoto N,Utiyama H

    更新日期:1983-12-06 00:00:00