Bayesian nonparametric analysis of neuronal intensity rates.

Abstract:

:We propose a flexible hierarchical Bayesian nonparametric modeling approach to compare the spiking patterns of neurons recorded under multiple experimental conditions. In particular, we showcase the application of our statistical methodology using neurons recorded from the supplementary eye field region of the brains of two macaque monkeys trained to make delayed eye movements to three different types of targets. The proposed Bayesian methodology can be used to perform either a global analysis, allowing for the construction of posterior comparative intervals over the entire experimental time window, or a pointwise analysis for comparing the spiking patterns locally, in a predetermined portion of the experimental time window. By developing our nonparametric Bayesian model we are able to analyze neuronal data from three or more conditions while avoiding the computational expenses typically associated with more traditional analysis of physiological data.

journal_name

J Neurosci Methods

authors

Kottas A,Behseta S,Moorman DE,Poynor V,Olson CR

doi

10.1016/j.jneumeth.2011.09.017

subject

Has Abstract

pub_date

2012-01-15 00:00:00

pages

241-53

issue

1

eissn

0165-0270

issn

1872-678X

pii

S0165-0270(11)00565-6

journal_volume

203

pub_type

杂志文章
  • A symmetrical Waxholm canonical mouse brain for NeuroMaps.

    abstract::NeuroMaps (2010) is a Web-based application that enables investigators to map data from macaque studies to a canonical atlas of the macaque brain. It currently serves as an image processor enabling them to create figures suitable for publication, presentation and archival purposes. Eventually it will enable investigat...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2010.11.028

    authors: Bowden DM,Johnson GA,Zaborsky L,Green WD,Moore E,Badea A,Dubach MF,Bookstein FL

    更新日期:2011-02-15 00:00:00

  • Detecting differences with magnetoencephalography of somatosensory processing after tactile and electrical stimuli.

    abstract:BACKGROUND:Deviant stimuli within a standard, frequent stimulus train induce a cortical somatosensory mismatch response (SMMR). The SMMR reflects the brain's automatic mechanism for the detection of change in a somatosensory domain. It is usually elicited by electrical stimulation, which activates nerve fibers and rece...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2018.09.014

    authors: Hautasaari P,Kujala UM,Tarkka IM

    更新日期:2019-01-01 00:00:00

  • Quantitative morphological study of microglial cells in the ischemic rat brain using principal component analysis.

    abstract::Pathogenic stimuli induce alterations in the morphology of microglial cells. We analysed changes in lectin-stained cells on the 1st, 3rd, 7th or 14th day after transient global ischemia. Three areas differing in the degree of microglial reaction were selected for analysis: the upper cerebral cortex, the hippocampal CA...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2005.01.009

    authors: Soltys Z,Orzylowska-Sliwinska O,Zaremba M,Orlowski D,Piechota M,Fiedorowicz A,Janeczko K,Oderfeld-Nowak B

    更新日期:2005-07-15 00:00:00

  • Lateral rectus whole muscle and motor unit contractile measures with the extraocular muscles intact.

    abstract::Both extracellular and intracellular stimulation of single motoneurons were shown to be similarly effective and consistent in eliciting contractile responses in single lateral rectus muscle motor units. The whole muscle was activated by stimulating the sixth nerve in the brain stem. Both whole muscle and motor unit co...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(97)00141-6

    authors: Goldberg SJ,Shall MS

    更新日期:1997-12-30 00:00:00

  • A novel mouse model of contralateral C7 transfer via the pretracheal route: A feasibility study.

    abstract:BACKGROUND:Contralateral seventh cervical nerve transfer (contralateral C7 transfer) is a novel treatment for patients with spastic paralysis, including stroke and traumatic brain injury. However, little is known on changes in plasticity that occur in the intact hemisphere after C7 transfer. An appropriate surgical mod...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2019.108445

    authors: Ye X,Shen YD,Feng JT,Wang F,Gao ZR,Lei GW,Yu AP,Wang CP,Liang CM,Xu WD

    更新日期:2019-12-01 00:00:00

  • A novel apparatus for measuring rat locomotor behavior.

    abstract::A novel, inexpensive apparatus (locometer) was designed to measure behavioral activity of rats including gross locomotor activity, rearing, and structural characteristics of movement patterns (i.e. fractal dimension). Measurements were done in 3 dimensions at a resolution of approximately 1 cm. To test the sensitivity...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(94)00145-7

    authors: Brodkin J,Nash JF

    更新日期:1995-04-01 00:00:00

  • A method for calculating current source density (CSD) analysis without resorting to recording sites outside the sampling volume.

    abstract::This article is part of a study on cortical microcircuitry in which flash evoked potentials (FEPs) were recorded from the anesthetized rat visual cortex. The FEPs were subjected to current source density analysis (CSD). One of the limitations of the CSD method is the need for recording sites outside the sampling volum...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(88)90056-8

    authors: Vaknin G,DiScenna PG,Teyler TJ

    更新日期:1988-06-01 00:00:00

  • A highly sensitive opto-electronic system for the measurement of movements.

    abstract::An opto-electronic system has been developed to measure movements of insect appendages. It is made from a mirror-lens and a linear position-sensitive photodiode. The design of the mirror-lens has been exploited to axially mount a high intensity halogen light source in front of the mirror-lens. The system monitors a re...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(00)00255-7

    authors: Hedwig B

    更新日期:2000-07-31 00:00:00

  • A new video/computer method to measure the amount of overall movement in experimental animals (two-dimensional object-difference method).

    abstract::Evaluation of the amount of overall animal movement is important for investigations of motor control mechanisms in the central nervous system. We describe a new method to quantify overall free movements of an animal without any markers using a video camera and a personal computer equipped with a video-capture board. T...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(99)00082-5

    authors: Hashimoto T,Izawa Y,Yokoyama H,Kato T,Moriizumi T

    更新日期:1999-09-15 00:00:00

  • A comparison of human brain dissection by drill versus saw on nucleic acid quality.

    abstract::This study examined the effect of two dissection techniques on the quality of human brain specimens. Frozen cerebellar samples were obtained from postmortem brains of 10 subjects free from neurological and psychiatric disease. These tissues were tested for RNA and DNA concentration and quality after being dissected wi...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2008.12.027

    authors: Buerlein RC,Hyde TM,Lipska BK,Robinson W,Khosla A,Kleinman JE

    更新日期:2009-04-30 00:00:00

  • Computer-assisted mapping with the light microscope.

    abstract::With the system described specific features in a histological section such as neuronal degeneration, specific cell types, or the silver grains of autoradiography can be accurately localized. It is simple to operate, and allows for data storage and retrieval. The system consists of a Zeiss Universal microscope equipped...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(79)90007-4

    authors: Forbes DJ,Petry RW

    更新日期:1979-03-01 00:00:00

  • Implantable microelectrode arrays for simultaneous electrophysiological and neurochemical recordings.

    abstract::Implantable microfabricated microelectrode arrays represent a versatile and powerful tool to record electrophysiological activity across multiple spatial locations in the brain. Spikes and field potentials, however, correspond to only a fraction of the physiological information available at the neural interface. In ur...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2008.06.036

    authors: Johnson MD,Franklin RK,Gibson MD,Brown RB,Kipke DR

    更新日期:2008-09-15 00:00:00

  • A microassay for simultaneous measurement of in vivo rates of tryptophan hydroxylation and levels of serotonin in discrete brain nuclei.

    abstract::A sensitive procedure for simultaneous determination of in vivo rates of tryptophan hydroxylation and levels of serotonin (5-HT) in discrete rat brain nuclei is described. Rates of tryptophan hydroxylation are estimated by 5-hydroxytryptophan (5-HTP) accumulation following l-aromatic amino acid decarboxylase inhibitio...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(82)90015-2

    authors: Long JB,Youngblood WW,Kizer JS

    更新日期:1982-07-01 00:00:00

  • Synaptic plasticity in the hippocampal slice: functional consequences.

    abstract::There are 3 known forms of synaptic plasticity at CNS synapses: long-term potentiation (LTP) mediated by NMDA receptor activation, LTP mediated by voltage-dependent calcium channel (VDCC) activation, and long-term depression (LTD) mediated by the NMDA receptor. All 3 forms of synaptic plasticity can be observed in hip...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(94)00188-m

    authors: Teyler TJ,Cavus I,Coussens C

    更新日期:1995-06-01 00:00:00

  • A new strategy for analysis of phenotype marker antigens in hollow neurospheres.

    abstract::Changes in expression of phenotypic markers characterizing the cells comprising intact neurospheres are difficult to determine easily and accurately. The problem is compounded by the diversity of cell populations and phenotypes involved, and consequent non-uniform protein expression across the neurosphere wall, or aro...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2004.04.014

    authors: Moeller ML,Dimitrijevich SD

    更新日期:2004-10-15 00:00:00

  • Quantitation of dopaminergic neurons in 3-dimensional reaggregate tissue culture by computer-assisted image analysis.

    abstract::Three-dimensional (3D) reaggregate tissue culture provides a means of quantitatively assessing neuronal cell survival under a variety of experimental conditions. A method is presented for estimation of, and comparison between, the total numbers of cells of a given neurochemical type within individual experimental flas...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(94)00110-3

    authors: Vidal L,Heller B,Won L,Heller A

    更新日期:1995-01-01 00:00:00

  • Kinetic analysis of striatal clearance of exogenous dopamine recorded by chronoamperometry in freely-moving rats.

    abstract::Previously, we developed technology that coupled high-speed chronoamperometry with microejections of dopamine (DA) to measure DA clearance in the brains of freely-behaving rats. Here, by varying the ejection volumes of DA across a 200-fold difference, the kinetics of striatal clearance were analyzed as a function of t...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(02)00229-7

    authors: Sabeti J,Adams CE,Burmeister J,Gerhardt GA,Zahniser NR

    更新日期:2002-11-15 00:00:00

  • Application of 'nose-poke habituation' validation with post-trial diazepam- and cholecystokinin-induced hypo- and hypermnesia.

    abstract::The present study describes the use of nose-poke habituation as a memory task and demonstrates that it is sensitive to hypo- and hypermnestic pharmacological treatments administered post-trial. Habituation of nose-poke behavior of rats was defined as a reduction in number of nose-pokes compared to baseline. It was mea...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(94)00143-5

    authors: Voits M,Fink H,Gerhardt P,Huston JP

    更新日期:1995-03-01 00:00:00

  • Transcardial perfusion is not required to accurately measure cytokines within the brain.

    abstract:BACKGROUND:Cytokines are key signaling molecules within the immune system that regulate a host's response to pathogens and neuronal damage. Aberrant cytokine signaling has been implicated in many neurological diseases. Therefore, accurately measuring cytokine concentrations within the brain is crucial. NEW METHOD:This...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2020.108601

    authors: Walker WH 2nd,Bumgarner JR,Nelson RJ,Courtney DeVries A

    更新日期:2020-01-22 00:00:00

  • MicroRNA expression profiling of hypothalamic arcuate and paraventricular nuclei from single rats using Illumina sequencing technology.

    abstract::MicroRNAs (miRNAs) finely tune messenger RNA (mRNA) expression. As the brain is a highly heterogeneous tissue, physiologically relevant miRNA expression profiling greatly benefits from sampling brain regions or nuclei. MiRNA expression profiling from individual samples is also important for investigating potential dif...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2012.05.033

    authors: Amar L,Benoit C,Beaumont G,Vacher CM,Crepin D,Taouis M,Baroin-Tourancheau A

    更新日期:2012-07-30 00:00:00

  • Compensation of physiological motion enables high-yield whole-cell recording in vivo.

    abstract:BACKGROUND:Whole-cell patch-clamp recording in vivo is the gold-standard method for measuring subthreshold electrophysiology from single cells during behavioural tasks, sensory stimulations, and optogenetic manipulation. However, these recordings require a tight, gigaohm resistance, seal between a glass pipette electro...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2020.109008

    authors: Stoy WM,Yang B,Kight A,Wright NC,Borden PY,Stanley GB,Forest CR

    更新日期:2021-01-15 00:00:00

  • Progressive incorporation of propidium iodide in cultured mouse neurons correlates with declining electrophysiological status: a fluorescence scale of membrane integrity.

    abstract::We describe a visual assay of neuronal electrophysiologic status for use with cultured neurons, based on the exclusion of propidium iodide (PI) by intact cellular membranes. We use this fluorescent dye, which binds to nucleic acids, at concentrations suitable for long-term exposure to neurons without toxicity. We corr...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(90)90007-3

    authors: Macklis JD,Madison RD

    更新日期:1990-01-01 00:00:00

  • The effects of apparatus design and test procedure on learning and memory performance of C57BL/6J mice on the Barnes maze.

    abstract::The Barnes maze is a visuo-spatial learning and memory test originally designed for use with rats, and later adapted for use with mice. The Barnes maze design and test procedure vary across studies using mice, but the effects of variation in Barnes maze design and test procedure on learning and memory in mice have not...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2011.09.027

    authors: O'Leary TP,Brown RE

    更新日期:2012-01-30 00:00:00

  • Using double-magnetic induction to measure head-unrestrained gaze shifts. I. Theory and validation.

    abstract::So far, the double-magnetic induction (DMI) method has been successfully applied to record eye movements from head-restrained humans, monkeys and cats. An advantage of the DMI method, compared to the more widely used scleral search coil technique, is the absence of vulnerable lead wires on the eye. A disadvantage, how...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2006.08.012

    authors: Bremen P,Van der Willigen RF,Van Opstal AJ

    更新日期:2007-02-15 00:00:00

  • A weighted index of bilateral brain lesions.

    abstract::Attempts to correlate the amount of bilateral brain injury with behavioral changes can be complicated if the lesions are bilaterally unsymmetrical in volume. Further complications are introduced if unilateral lesions are ineffective in producing behavioral changes. An index, W%, is proposed which is based on the produ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(84)90046-3

    authors: Hodos W,Bobko P

    更新日期:1984-11-01 00:00:00

  • A multiple-contact EMG recording array for mapping single muscle unit territories.

    abstract::The glycogen-depletion technique has become a well-established method for determining histologically the cross-sectional distribution of a single muscle unit. A major drawback of this method is its low yield of one depleted unit per experiment. Furthermore, this technique is particularly unsuited for determining the l...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(87)90108-7

    authors: Chanaud CM,Pratt CA,Loeb GE

    更新日期:1987-10-01 00:00:00

  • Quantitative evaluation of orofacial motor function in mice: The pasta gnawing test, a voluntary and stress-free behavior test.

    abstract:BACKGROUND:Evaluation of motor deficits in rodents is mostly restricted to limb motor tests that are often high stressors for the animals. NEW METHOD:To test rodents for orofacial motor impairments in a stress-free environment, we established the pasta gnawing test by measuring the biting noise of mice that eat a piec...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2016.10.006

    authors: Rabl R,Horvath A,Breitschaedel C,Flunkert S,Roemer H,Hutter-Paier B

    更新日期:2016-12-01 00:00:00

  • COLORcation: A new application to phenotype exploratory behavior models of anxiety in mice.

    abstract:BACKGROUND:Behavioral analyses in rodents have successfully delineated the function of many genes and signaling pathways in the brain. Behavioral testing uses highly defined experimental conditions to identify abnormalities in a given mouse strain or genotype. The open field (OF) is widely used to assess both locomotio...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2016.06.003

    authors: Dagan SY,Tsoory MM,Fainzilber M,Panayotis N

    更新日期:2016-09-01 00:00:00

  • A fresh look at functional link neural network for motor imagery-based brain-computer interface.

    abstract:BACKGROUND:Artificial neural networks (ANNs) are one of the widely used classifiers in the brain-computer interface (BCI) systems-based on noninvasive electroencephalography (EEG) signals. Among the different ANN architectures, the most commonly applied for BCI classifiers is the multilayer perceptron (MLP). When appro...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2018.05.001

    authors: Hettiarachchi IT,Babaei T,Nguyen T,Lim CP,Nahavandi S

    更新日期:2018-07-15 00:00:00

  • Common spatial pattern and wavelet decomposition for motor imagery EEG- fTCD brain-computer interface.

    abstract:BACKGROUND:Recently, hybrid brain-computer interfaces (BCIs) combining more than one modality have been investigated with the aim of boosting the performance of the existing single-modal BCIs in terms of accuracy and information transfer rate (ITR). Previously, we introduced a novel hybrid BCI in which EEG and fTCD mod...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2019.03.018

    authors: Khalaf A,Sejdic E,Akcakaya M

    更新日期:2019-05-15 00:00:00