The iron-sulfur cluster of pyruvate formate-lyase activating enzyme in whole cells: cluster interconversion and a valence-localized [4Fe-4S]2+ state.

Abstract:

:Pyruvate formate-lyase activating enzyme (PFL-AE) catalyzes the generation of a catalytically essential glycyl radical on pyruvate formate-lyase (PFL). Purified PFL-AE contains an oxygen-sensitive, labile [4Fe-4S] cluster that undergoes cluster interconversions in vitro, with only the [4Fe-4S](+) cluster state being catalytically active. Such cluster interconversions could play a role in regulating the activity of PFL-AE, and thus of PFL, in response to oxygen levels in vivo. Here we report a Mossbauer investigation on whole cells overexpressing PFL-AE following incubation under aerobic and/or anaerobic conditions and provide evidence that PFL-AE undergoes cluster interconversions in vivo. After 2 h aerobic induction of PFL-AE expression, approximately 44% of the total iron is present in [4Fe-4S](2+) clusters, 6% in [2Fe-2S](2+) clusters, and the remainder as noncluster Fe(III) (29%) and Fe(II) (21%) species. Subsequent anaerobic incubation of the culture results in approximately 75% of the total iron being present as [4Fe-4S](2+) clusters, with no detectable [2Fe-2S](2+). Ensuing aerobic incubation of the culture converts the iron species nearly back to the original composition (42% [4Fe-4S](2+), 10% [2Fe-2S](2+), 19% Fe(III), and 29% Fe(II)). The results provide evidence for changes in cluster composition of PFL-AE in response to the redox state of the cell. Furthermore, the Mossbauer spectra reveal that the [4Fe-4S](2+) cluster of PFL-AE in whole cells contains a valence-localized Fe(III)Fe(II) pair which has not been previously observed in the purified enzyme. Addition of certain small molecules containing adenosyl moieties, including 5'-deoxyadenosine, AMP, ADP, and methylthioadenosine, to purified PFL-AE reproduces the valence-localized state of the [4Fe-4S](2+) cluster. It is speculated that the [4Fe-4S](2+) cluster of PFL-AE in whole cells may be coordinated by a small molecule, probably AMP, and that such coordination may protect this labile cluster from oxidative damage.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Yang J,Naik SG,Ortillo DO,García-Serres R,Li M,Broderick WE,Huynh BH,Broderick JB

doi

10.1021/bi9010286

subject

Has Abstract

pub_date

2009-10-06 00:00:00

pages

9234-41

issue

39

eissn

0006-2960

issn

1520-4995

journal_volume

48

pub_type

杂志文章
  • A potent oligosaccharyl transferase inhibitor that crosses the intracellular endoplasmic reticulum membrane.

    abstract::Recent work has resulted in the development of potent inhibitors of oligosaccharyl transferase (OT), the enzyme that catalyzes the cotranslational glycosylation of asparagine [Hendrickson, T. L., Spencer, J. R., Kato, M., and Imperiali, B. (1996) J. Am. Chem. Soc. 118, 7636-7637; Kellenberger, C., Hendrickson, T. L., ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982740e

    authors: Eason PD,Imperiali B

    更新日期:1999-04-27 00:00:00

  • Seipin is a discrete homooligomer.

    abstract::Seipin is a transmembrane protein that resides in the endoplasmic reticulum and concentrates at junctions between the ER and cytosolic lipid droplets. Mutations in the human seipin gene, including the missense mutation A212P, lead to congenital generalized lipodystrophy (CGL), characterized by the lack of normal adipo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1013003

    authors: Binns D,Lee S,Hilton CL,Jiang QX,Goodman JM

    更新日期:2010-12-21 00:00:00

  • Fluorescence studies suggest a role for alpha-synuclein in the phosphatidylinositol lipid signaling pathway.

    abstract::Alpha-synuclein plays a key role in the pathogenesis of many neurodegenerative diseases. To date, its cellular role has yet to be determined, although it has been proposed to be connected to calcium and G protein-mediated dopamine signaling. Alpha-synuclein is known to bind strongly to model membrane surfaces where it...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0487140

    authors: Narayanan V,Guo Y,Scarlata S

    更新日期:2005-01-18 00:00:00

  • Spin labeling analysis of structure and dynamics of the Na(+)/proline transporter of Escherichia coli.

    abstract::With respect to the functional importance attributed to the N-terminal part of the Na(+)/proline transporter of Escherichia coli (PutP), we report here on the structural arrangement and functional dynamics of transmembrane domains (TMs) II and III and the adjoining loop regions. Information on membrane topography was ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992442x

    authors: Wegener C,Tebbe S,Steinhoff HJ,Jung H

    更新日期:2000-04-25 00:00:00

  • Resonance Raman and electronic absorption spectral studies of some beta-(2-furyl)acryloylglyceraldehyde-3-phosphate dehydrogenases.

    abstract::Electronic absorption and resonance Raman spectra, together with rates of arsenolysis, are used to show that the acylated subunits of the rabbit furylacryloylglyceraldehyde-3-phosphate dehydrogenase (FA-rabbit enzyme), but not the FA-sturgeon enzyme, exist as a mixed population of at least two forms. One form of the F...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00515a023

    authors: Storer AC,Phelps DJ,Carey PR

    更新日期:1981-06-09 00:00:00

  • pH dependence of adenosine 5'-triphosphate synthesis and hydrolysis catalyzed by reconstituted chloroplast coupling factor.

    abstract::The purified ATP-synthesizing complex from chloroplasts has been reconstituted into phospholipid vesicles with bacteriorhodopsin by use of octyl glucoside. Phosphorylation rates up to 90 mmol of ATP (mg of protein)-1 min-1 have been achieved. The dependence of the steady-state kinetic parameters on external and intern...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00527a018

    authors: Takabe T,Hammes GG

    更新日期:1981-11-24 00:00:00

  • Functional reconstitution of the gamma-aminobutyric acid transporter from synaptic vesicles using artificial ion gradients.

    abstract::The gamma-aminobutyric acid transporter of rat brain synaptic vesicles was reconstituted in proteoliposomes, and its activity was studied in response to artificially created membrane potentials or proton gradients. Changes of the membrane potential were monitored using the dyes oxonol VI and 3,3'-diisopropylthiodicarb...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00115a009

    authors: Hell JW,Edelmann L,Hartinger J,Jahn R

    更新日期:1991-12-24 00:00:00

  • A probe for the mutagenic activity of the carcinogen 4-aminobiphenyl: synthesis and characterization of an M13mp10 genome containing the major carcinogen-DNA adduct at a unique site.

    abstract::The duplex genome of Escherichia coli virus M13mp10 was modified at a unique site to contain N-(deoxyguanosin-8-yl)-4-aminobiphenyl (dG8-ABP), the major carcinogen-DNA adduct of the human bladder carcinogen 4-aminobiphenyl. A tetradeoxynucleotide containing a single dG8-ABP residue was synthesized by reacting 5'-d(TpG...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00385a019

    authors: Lasko DD,Basu AK,Kadlubar FF,Evans FE,Lay JO Jr,Essigmann JM

    更新日期:1987-06-02 00:00:00

  • A rotary mechanism for coenzyme B(12) synthesis by adenosyltransferase.

    abstract::Adenosyltransferases (ATRs) catalyze the synthesis of the reactive cobalt-carbon bond found in coenzyme B(12) or 5'-deoxyadenosylcobalamin (AdoCbl), which serves as a cofactor for a number of isomerases. The reaction involves a reductive adenosylation of cob(II)alamin in which an electron delivered by a reductase redu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900454s

    authors: Padovani D,Banerjee R

    更新日期:2009-06-16 00:00:00

  • Mechanism of human alpha-1,3-fucosyltransferase V: glycosidic cleavage occurs prior to nucleophilic attack.

    abstract::alpha-1,3-Fucosyltransferase V (FucT V) catalyzes the transfer of 1-fucose from the donor sugar guanosine 5'-diphospho-beta-1-fucose (GDP-Fuc) to an acceptor sugar. A secondary isotope effect on the fucosyltransfer reaction with guanosine 5'-diphospho-[1-2H]-beta-1-fucose (GDP-[1-2H]-Fuc) as the substrate was observed...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962284z

    authors: Murray BW,Wittmann V,Burkart MD,Hung SC,Wong CH

    更新日期:1997-01-28 00:00:00

  • Sodium-dependent steps in the redox reactions of the Na+-motive NADH:quinone oxidoreductase from Vibrio harveyi.

    abstract::The Na+-translocating NADH:ubiquinone oxidoreductase (Na+-NQR) from Vibrio harveyi was purified and studied by EPR and visible spectroscopy. Two EPR signals in the NADH-reduced enzyme were detected: one, a radical signal, and the other a line around g = 1.94, which is typical for a [2Fe-2S] cluster. An E(m) of -267 mV...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002545b

    authors: Bogachev AV,Bertsova YV,Barquera B,Verkhovsky MI

    更新日期:2001-06-19 00:00:00

  • Water in the active site of ketosteroid isomerase.

    abstract::Classical molecular dynamics simulations were utilized to investigate the structural and dynamical properties of water in the active site of ketosteroid isomerase (KSI) to provide insight into the role of these water molecules in the enzyme-catalyzed reaction. This reaction is thought to proceed via a dienolate interm...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200703y

    authors: Hanoian P,Hammes-Schiffer S

    更新日期:2011-08-09 00:00:00

  • Hydron transfer catalyzed by triosephosphate isomerase. Products of the direct and phosphite-activated isomerization of [1-(13)C]-glycolaldehyde in D(2)O.

    abstract::Product distributions for the reaction of glycolaldehyde labeled with carbon-13 at the carbonyl carbon ([1-(13)C]-GA) catalyzed by triosephosphate isomerase (TIM) in D(2)O at pD 7.0 in the presence of phosphite dianion and in its absence were determined by (1)H NMR spectroscopy. We observe three products for the relat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900636c

    authors: Go MK,Amyes TL,Richard JP

    更新日期:2009-06-23 00:00:00

  • Structural basis for the activity and substrate specificity of Erwinia chrysanthemi L-asparaginase.

    abstract::Bacterial L-asparaginases, enzymes that catalyze the hydrolysis of L-asparagine to aspartic acid, have been used for over 30 years as therapeutic agents in the treatment of acute childhood lymphoblastic leukemia. Other substrates of asparaginases include L-glutamine, D-asparagine, and succinic acid monoamide. In this ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0029595

    authors: Aghaiypour K,Wlodawer A,Lubkowski J

    更新日期:2001-05-15 00:00:00

  • Electron transfer within xanthine oxidase: a solvent kinetic isotope effect study.

    abstract::Solvent kinetic isotope effect studies of electron transfer within xanthine oxidase have been performed, using a stopped-flow pH-jump technique to perturb the distribution of reducing equivalents within partially reduced enzyme and follow the kinetics of reequilibration spectrophotometrically. It is found that the rat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00099a004

    authors: Hille R

    更新日期:1991-09-03 00:00:00

  • A molecular envelope of the ligand-binding domain of a glutamate receptor in the presence and absence of agonist.

    abstract::Solution scattering studies were performed on a ligand-binding domain (S1S2) of a glutamate receptor ion channel (GluR) in order to study GluR-binding and signal-transduction mechanisms. The core of the ligand-binding domain is homologous to prokaryotic periplasmic binding proteins (PBP), whose binding mechanism invol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982928y

    authors: Abele R,Svergun D,Keinänen K,Koch MH,Madden DR

    更新日期:1999-08-24 00:00:00

  • Porcine proparathyroid hormone. Identification, biosynthesis, and partial amino acid sequence.

    abstract::Porcine parathyroid gland slices were incubated with 3H-labeled amino acids in order to label tissue proteins. After incubation a crude hormonal extract was prepared and analyzed by chromatography on carboxymethylcellulose. Among the three radioactive peaks which were detected in the eluate, two were identified as par...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00687a018

    authors: Chu LK,Huang WY,Littledike ET,Hamilton JW,Cohn DV

    更新日期:1975-08-12 00:00:00

  • Proton and deuteron nuclear magnetic relaxation dispersion studies of Ca2+-Mn2+-lentil lectin and Ca2+-Mn2+-pea lectin: evidence for a site of solvent exchange in common with concanavalin A.

    abstract::Measurements of the magnetic field dependence of the longitudinal magnetic relaxation rates (NMRD profiles) of solvent protons and deuterons led to the discovery of two classes of solvent binding sites in Ca2+-Mn2+-concanavalin A (CMPL) [Koenig, S. H., Brown, R. D., III, & Brewer, C. F. (1985) Biochemistry (second of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00340a004

    authors: Bhattacharyya L,Brewer CF,Brown RD 3rd,Koenig SH

    更新日期:1985-09-10 00:00:00

  • Interaction of acetylene and cyanide with the resting state of nitrogenase alpha-96-substituted MoFe proteins.

    abstract::The nitrogenase MoFe protein contains the active site metallocluster called FeMo-cofactor [7Fe-9S-Mo-homocitrate] that exhibits an S = 3/2 EPR signal in the resting state. No interaction with FeMo-cofactor is detected when either substrates or inhibitors are incubated with MoFe protein in the resting state. Rather, th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011571m

    authors: Benton PM,Mayer SM,Shao J,Hoffman BM,Dean DR,Seefeldt LC

    更新日期:2001-11-20 00:00:00

  • Structure of Toxoplasma gondii LDH1: active-site differences from human lactate dehydrogenases and the structural basis for efficient APAD+ use.

    abstract::While within a human host the opportunistic pathogen Toxoplasma gondii relies heavily on glycolysis for its energy needs. Lactate dehydrogenase (LDH), the terminal enzyme in anaerobic glycolysis necessary for NAD(+) regeneration, therefore represents an attractive therapeutic target. The tachyzoite stage lactate dehyd...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035108g

    authors: Kavanagh KL,Elling RA,Wilson DK

    更新日期:2004-02-03 00:00:00

  • An iron-sulfur cluster loop motif in the Archaeoglobus fulgidus uracil-DNA glycosylase mediates efficient uracil recognition and removal.

    abstract::The family 4 uracil-DNA glycosylase from the hyperthermophilic organism Archaeoglobus fulgidus (AFUDG) is responsible for the removal of uracil in DNA as the first step in the base excision repair (BER) pathway. AFUDG contains a large solvent-exposed peptide region containing an α helix and loop anchored on each end v...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3000462

    authors: Engstrom LM,Partington OA,David SS

    更新日期:2012-06-26 00:00:00

  • Insights into the catalytic mechanisms of phenylalanine and tryptophan hydroxylase from kinetic isotope effects on aromatic hydroxylation.

    abstract::Phenylalanine hydroxylase (PheH) and tryptophan hydroxylase (TrpH) catalyze the aromatic hydroxylation of phenylalanine and tryptophan, forming tyrosine and 5-hydroxytryptophan, respectively. The reactions of PheH and TrpH have been investigated with [4-(2)H]-, [3,5-(2)H(2)]-, and (2)H(5)-phenylalanine as substrates. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0607554

    authors: Pavon JA,Fitzpatrick PF

    更新日期:2006-09-12 00:00:00

  • Specific substitution into the anticodon loop of yeast tyrosine transfer RNA.

    abstract::The aminoacylation kinetics of 19 different variants of yeast tRNATyr with nucleotide substitutions in positions 33-35 were determined. Substitution of the conserved uridine-33 does not alter the rate of aminoacylation. However, substitution of the anticodon position 34 or position 35 reduces Km from 2- to 10-fold and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00367a072

    authors: Bare LA,Uhlenbeck OC

    更新日期:1986-09-23 00:00:00

  • Dihydrofolate reductase from Escherichia coli: probing the role of aspartate-27 and phenylalanine-137 in enzyme conformation and the binding of NADPH.

    abstract::In the absence of ligands, dihydrofolate reductase from Escherichia coli exists in at least two interconvertible conformations, only one of which binds NADPH with high affinity. This equilibrium is pH dependent, involving an ionizable group of the enzyme (pK approximately 5.5), and the proportion of the NADPH-binding ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00489a010

    authors: Dunn SM,Lanigan TM,Howell EE

    更新日期:1990-09-18 00:00:00

  • A new pathway for transmembrane electron transfer in photosynthetic reaction centers of Rhodobacter sphaeroides not involving the excited special pair.

    abstract::It is generally accepted that electron transfer in bacterial photosynthesis is driven by the first singlet excited state of a special pair of bacteriochlorophylls (P*). We have examined the first steps of electron transfer in a mutant of the Rhodobacter sphaeroides reaction center in which charge separation from P* is...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9703756

    authors: Van Brederode ME,Jones MR,Van Mourik F,Van Stokkum IH,Van Grondelle R

    更新日期:1997-06-10 00:00:00

  • An unusual catalytic subunit for the cAMP-dependent protein kinase of Dictyostelium discoideum.

    abstract::The cAMP-dependent protein kinase (cAPK) plays an essential role during differentiation and fruit morphogenesis in Dictyostelium discoideum. The presence of an open reading frame on the gene, pkaC (previously named either Dd PK2 or Dd PK3 by different groups), predicts a 73-kDa polypeptide with 54% similarity to the c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00088a003

    authors: Anjard C,Etchebehere L,Pinaud S,Véron M,Reymond CD

    更新日期:1993-09-21 00:00:00

  • Stimulation of transcript elongation requires both the zinc finger and RNA polymerase II binding domains of human TFIIS.

    abstract::The eukaryotic transcriptional factor TFIIS enhances transcript elongation by RNA polymerase II. Here we describe two functional domains in the 280 amino acid human TFIIS protein: residues within positions 100-230 are required for binding to polymerase, and residues 230-280, which form a zinc finger, are required in c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00245a026

    authors: Agarwal K,Baek KH,Jeon CJ,Miyamoto K,Ueno A,Yoon HS

    更新日期:1991-08-06 00:00:00

  • Charge stabilization and entropy reduction of central lysine residues in fructose-bisphosphate aldolase.

    abstract::Fructose-1,6-bisphosphate muscle aldolase is an essential glycolytic enzyme that catalyzes reversible carbon-carbon bond formation by cleaving fructose 1,6-bisphosphate to yield dihydroxyacetone phosphate (DHAP) and d-glyceraldehyde phosphate. To elucidate the mechanistic role of conserved amino acid Asp-33, Asn-33 an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8021558

    authors: St-Jean M,Blonski C,Sygusch J

    更新日期:2009-06-02 00:00:00

  • Structural and functional analysis of peptidyl oligosaccharyl transferase inhibitors.

    abstract::The peptide cyclo(hex-Amb(1)-Cys(2))-Thr(3)-Val(4)-Thr(5)-Nph(6)-NH2 was previously shown to be a slow, tight-binding inhibitor (Ki = 37 nM) of the yeast oligosaccharyl transferase (OT) [Hendrickson et al. (1996) J. Am. Chem. Soc. 118, 7636-7637]. This enzyme catalyzes the transfer of a carbohydrate moiety to an aspar...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971465d

    authors: Kellenberger C,Hendrickson TL,Imperiali B

    更新日期:1997-10-14 00:00:00

  • Identification of a 33-kilodalton cytoskeletal protein with high affinity for the sodium channel.

    abstract::The voltage-sensitive sodium channel is an intrinsic membrane protein that is nonrandomly distributed in neurons, suggesting a possible interaction with other cellular constituents. In this study, we have directly tested the hypothesis that components of the cytoskeleton interact with sodium channels. Utilizing the me...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00406a003

    authors: Edelstein NG,Catterall WA,Moon RT

    更新日期:1988-03-22 00:00:00