Activation of polyisoprenyl diphosphate phosphatase 1 remodels cellular presqualene diphosphate.

Abstract:

:Polyisoprenyl diphosphates play diverse and vital roles in cell function in health and disease. The counter-regulatory lipid signaling molecule, presqualene diphosphate (PSDP), is rapidly converted to its monophosphate form (PSMP) upon cell activation [Levy, B. D., Petasis, N. A., and Serhan, C. N. (1997) Nature 389, 985-990]. The first PSDP phosphatase was recently identified and named polyisoprenyl diphosphate phosphatase 1 (PDP1) [Fukunaga, K., et al. (2006) J. Biol. Chem. 281, 9490-9497]. Here, we present evidence that PDP1 displays properties of a lipid phosphate phosphatase/phosphotransferase with distinct substrate preference for PSDP. Cell activation with PMA increased PSDP phosphatase activity in a concentration-dependent manner, and Western analysis suggested that PDP1 is directly phosphorylated by protein kinase C. Cellular PSDP phosphatase activity was also induced by the receptor-mediated agonists insulin and TNF-alpha. To address PDP1's contribution to cellular PSDP phosphatase activity, HEK293 cells were established that stably expressed PDP1 siRNA, leading to a 60% decrease in the level of PDP1 RNA, and concomitant decreases in PDP1 protein and PMA-initiated PSDP phosphatase activity. HEK293 cells harboring the PDP1 siRNA construct also displayed a marked decrease in the extent of PMA-initiated conversion of cellular PSDP to PSMP. Together, these findings are the first to indicate that PDP1 is activated during cell responses to soluble stimuli to convert PSDP to PSMP. Moreover, they provide evidence that PDP1 can serve as a new checkpoint for polyisoprenyl phosphate remodeling during cell activation.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Carlo T,Petasis NA,Levy BD

doi

10.1021/bi8020636

subject

Has Abstract

pub_date

2009-04-07 00:00:00

pages

2997-3004

issue

13

eissn

0006-2960

issn

1520-4995

pii

10.1021/bi8020636

journal_volume

48

pub_type

杂志文章
  • Conformation of myosin interdomain interactions during contraction: deductions from muscle fibers using polarized fluorescence.

    abstract::Myosin cross-bridge subfragment 1 (S1) is the ATP catalyzing motor protein in muscle. It consists of three domains that catalyze ATP and bind actin (catalytic), conduct energy transduction (converter), and transport the load (lever arm). Force development during contraction is thought to result from rotary lever arm m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002387o

    authors: Burghardt TP,Cruz-Walker AR,Park S,Ajtai K

    更新日期:2001-04-17 00:00:00

  • The Streptomyces-produced antibiotic fosfomycin is a promiscuous substrate for archaeal isopentenyl phosphate kinase.

    abstract::Isopentenyl phosphate kinase (IPK) catalyzes the phosphorylation of isopentenyl phosphate to form the isoprenoid precursor isopentenyl diphosphate in the archaeal mevalonate pathway. This enzyme is highly homologous to fosfomycin kinase (FomA), an antibiotic resistance enzyme found in a few strains of Streptomyces and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201662k

    authors: Mabanglo MF,Serohijos AW,Poulter CD

    更新日期:2012-01-31 00:00:00

  • Electrochemical immunoassay of membrane P-glycoprotein by immobilization of cells on gold nanoparticles modified on a methoxysilyl-terminated butyrylchitosan matrix.

    abstract::A strategy to detect P-glycoprotein (P-gp) on cell membrane and quantify the cell number using electrochemical immunoassay was developed by effective surface immunoreactions and immobilization of cells on a highly hydrophilic interface, which was constructed by adsorption of colloidal gold nanoparticles on a methoxysi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0507332

    authors: Du D,Ju H,Zhang X,Chen J,Cai J,Chen H

    更新日期:2005-08-30 00:00:00

  • Remodeling of the Binding Site of Nucleoside Diphosphate Kinase Revealed by X-ray Structure and H/D Exchange.

    abstract::To be fully active and participate in the metabolism of phosphorylated nucleotides, most nucleoside diphosphate kinases (NDPKs) have to assemble into stable hexamers. Here we studied the role played by six intersubunit salt bridges R80-D93 in the stability of NDPK from the pathogen Mycobacterium tuberculosis ( Mt). Mu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b01308

    authors: Dautant A,Henri J,Wales TE,Meyer P,Engen JR,Georgescauld F

    更新日期:2019-03-12 00:00:00

  • Subgel phases of n-saturated diacylphosphatidylcholines: a Fourier-transform infrared spectroscopic study.

    abstract::The subgel phases of a homologous series of saturated straight-chain diacylphosphatidylcholines with hydrocarbon chains consisting of 10-18 carbon atoms were studied by Fourier-transform infrared spectroscopy. All of these lipids initially form a subgel phase which is spectroscopically similar to that obtained when fu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00486a024

    authors: Lewis RN,McElhaney RN

    更新日期:1990-08-28 00:00:00

  • Nuclear Overhauser experiments at 500 MHz on the downfield proton spectra of 5S ribonucleic acid and its complex with ribosomal protein L25.

    abstract::The downfield (9-15 ppm) proton spectrum of Escherichia coli 5S RNA has been examined at 500 MHz by using nuclear Overhauser methods. The data confirm the existence of the terminal and procaryotic loop helices within the molecule [Fox, G. E., & Woese, C. R. (1975) Nature (London) 256, 505-506]. Very little stable, dou...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00280a005

    authors: Kime MJ,Moore PB

    更新日期:1983-05-24 00:00:00

  • Access to the active site of periplasmic nitrate reductase: insights from site-directed mutagenesis and zinc inhibition studies.

    abstract::The periplasmic nitrate reductase (NapAB), a member of the DMSO reductase superfamily, catalyzes the first step of the denitrification process in bacteria. In this heterodimer, a di-heme NapB subunit is associated to the catalytic NapA subunit that binds a [4Fe-4S] cluster and a bis(molybdopterin guanine dinucleotide)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700928m

    authors: Dementin S,Arnoux P,Frangioni B,Grosse S,Léger C,Burlat B,Guigliarelli B,Sabaty M,Pignol D

    更新日期:2007-08-28 00:00:00

  • On the identity of nuclear membrane and non-histone nuclear proteins.

    abstract::The fate of plasma and nuclear membrane polypeptides in preparations of acidic chromosomal protein from chicken erythrocytes has been investigated. It is shown that detergent extraction procedures (Nonidet P-40, Triton X-100, and saponin), commonly employed in the preparation of acidic chromosomal protein, cannot be r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00670a034

    authors: Jackson RC

    更新日期:1976-12-14 00:00:00

  • Molecular structure of Escherichia coli PurT-encoded glycinamide ribonucleotide transformylase.

    abstract::In Escherichia coli, the PurT-encoded glycinamide ribonucleotide transformylase, or PurT transformylase, catalyzes an alternative formylation of glycinamide ribonucleotide (GAR) in the de novo pathway for purine biosynthesis. On the basis of amino acid sequence analyses, it is known that the PurT transformylase belong...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000926j

    authors: Thoden JB,Firestine S,Nixon A,Benkovic SJ,Holden HM

    更新日期:2000-08-01 00:00:00

  • A cluster of aromatic residues in the sixth membrane-spanning segment of the dopamine D2 receptor is accessible in the binding-site crevice.

    abstract::The binding site of the dopamine D2 receptor, like that of other homologous G protein-coupled receptors, is contained within a water-accessible crevice formed among its seven membrane-spanning segments. Using the substituted-cysteine accessibility method, we previously mapped the residues in the third, fifth, and seve...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972241y

    authors: Javitch JA,Ballesteros JA,Weinstein H,Chen J

    更新日期:1998-01-27 00:00:00

  • Cysteine auxotrophy of human leukemic lymphoblasts is associated with decreased amounts of intracellular cystathionase protein.

    abstract::A series of human lymphoblastoid cell lines derived from nonleukemic donors are known to be cysteine prototrophs (cys+), while several lymphoblastoid lines derived from leukemic donors are cysteine auxotrophs (cys-). We have tested representative cell lines of each type for their content of cystathionase enzyme activi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00508a041

    authors: Glode LM,Kriegler MP,Livingston DM

    更新日期:1981-03-03 00:00:00

  • Endonucleolytic cleavage of a long 3'-trailer sequence in a nuclear yeast suppressor tRNA.

    abstract::Transcripts of Saccharomyces cerevisiae nuclear tRNA genes are normally terminated within a few nucleotides of the tRNA coding region, in contrast to mitochondrially encoded tRNAs, which are contained within polycistronic transcripts and thus require 3'-processing by mitochondrial endonucleases. We show that 3'-proces...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00159a024

    authors: Furter R,Snaith M,Gillespie DE,Hall BD

    更新日期:1992-11-10 00:00:00

  • NMR relaxation of protein and water protons in diamagnetic hemoglobin solutions.

    abstract::We have measured T1 and T2 of protein and water protons in hemoglobin solutions using broad-line pulse techniques; selective excitation and detection methods enabled the intrinsic protein and water relaxation rates, as well as the spin-transfer rate between them, to be obtained at 5, 10, and 20 MHz. Water and protein ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00335a004

    authors: Eisenstadt M

    更新日期:1985-07-02 00:00:00

  • Direct observation of the enzyme-intermediate complex of 5-enolpyruvylshikimate-3-phosphate synthase by 13C NMR spectroscopy.

    abstract::The interaction of 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase, 4,5-dideoxyshikimate 3-phosphate (ddS3P), and [2-13C]-and [3-13C]phosphoenolpyruvate (PEP) has been examined by 13C NMR spectroscopy. Although no resonances due to a dead-end intermediate complex could be detected, an enzyme active site specific fo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00446a003

    authors: Barlow PN,Appleyard RJ,Wilson JO,Evans JN

    更新日期:1989-10-03 00:00:00

  • Mössbauer characterization of an unusual high-spin side-on peroxo-Fe3+ species in the active site of superoxide reductase from Desulfoarculus Baarsii. Density functional calculations on related models.

    abstract::Superoxide reductase (SOR) is an Fe protein that catalyzes the reduction of superoxide to give H(2)O(2). Recently, the mutation of the Glu47 residue into alanine (E47A) in the active site of SOR from Desulfoarculus baarsii has allowed the stabilization of an iron-peroxo species when quickly reacted with H(2)O(2) [Math...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0498151

    authors: Horner O,Mouesca JM,Oddou JL,Jeandey C,Nivière V,Mattioli TA,Mathé C,Fontecave M,Maldivi P,Bonville P,Halfen JA,Latour JM

    更新日期:2004-07-13 00:00:00

  • Identification of essential tyrosine and lysine residues in angiotensin converting enzyme: evidence for a single active site.

    abstract::Inactivation of rabbit lung angiotensin converting enzyme (ACE) by 1-fluoro-2,4-dinitrobenzene (Dnp-F) has been shown to be due primarily to the modification of a tyrosine residue [Bünning, P., Kleeman, S.G., & Riordan, J.F. (1990) Biochemistry (preceding paper in this issue)]. Rabbit testicular ACE is also inactivate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00498a011

    authors: Chen YN,Riordan JF

    更新日期:1990-11-20 00:00:00

  • Structural comparison of acyl carrier protein in acylated and sulfhydryl forms by two-dimensional 1H NMR spectroscopy.

    abstract::Sequence-specific assignments of 1H NMR resonances are obtained for the backbone protons of Escherichia coli acyl carrier protein, acylated with an eight-carbon chain covalently attached to the prosthetic group thiol (octanoyl-ACP). Comparison of 1H-1H sequential connectivities in the NOESY spectra of octanoyl-ACP and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00386a037

    authors: Jones PJ,Holak TA,Prestegard JH

    更新日期:1987-06-16 00:00:00

  • Electron transfer mechanism of the Rieske protein from Thermus thermophilus from solution nuclear magnetic resonance investigations.

    abstract::We report nuclear magnetic resonance (NMR) data indicating that the Rieske protein from the cytochrome bc complex of Thermus thermophilus (TtRp) undergoes modest redox-state-dependent and ligand-dependent conformational changes. To test models concerning the mechanism by which TtRp transfers between different sites on...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400296c

    authors: Hsueh KL,Tonelli M,Cai K,Westler WM,Markley JL

    更新日期:2013-04-30 00:00:00

  • Elucidation of the structural basis for the slow reactivity of thrombin with plasminogen activator inhibitor-1.

    abstract::Plasminogen activator inhibitor-1 (PAI-1) is a serine protease inhibitor of the serpin superfamily which rapidly inactivates tissue plasminogen activator (tPA), but reacts with thrombin at a much slower rate. Based on the previous mutagenesis studies and the X-ray crystal structure of the thrombin E192Q-bovine pancrea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9808518

    authors: Rezaie AR

    更新日期:1998-09-22 00:00:00

  • Modulating the redox potential and acid stability of rusticyanin by site-directed mutagenesis of Ser86.

    abstract::The expression of rusticyanin in Escherichia coli and a number of mutants for Ser86 is reported. Mutations of Ser86 to Asn, Asp, Gln, and Leu were undertaken as this is an Asn residue in other structurally characterized cupredoxins, and it has been suggested that this may be partly responsible for the high redox poten...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980960m

    authors: Hall JF,Kanbi LD,Harvey I,Murphy LM,Hasnain SS

    更新日期:1998-08-18 00:00:00

  • Aggregation of Alzheimer's amyloid β-peptide in biological membranes: a molecular dynamics study.

    abstract::Numerous studies have concluded that the interaction of the amyloid β-peptide (Aβ) and cellular membranes contributes to the toxicity and cell death observed in the progression of Alzheimer's disease. Aggregated Aβ species disrupt membranes, leading to physical instability and ion leakage. Further, the presence of Aβ ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400562x

    authors: Lemkul JA,Bevan DR

    更新日期:2013-07-23 00:00:00

  • Chromatin assembly factor 1 interacts with histone H3 methylated at lysine 79 in the processes of epigenetic silencing and DNA repair.

    abstract::In eukaryotic cells, chromatin is classified into euchromatin, which is active in transcription, and heterochromatin that silences transcription. Histones in these two domains contain distinct modifications. Chromatin assembly factor 1 (CAF-1) is a highly conserved protein that functions in DNA replication, DNA repair...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0521083

    authors: Zhou H,Madden BJ,Muddiman DC,Zhang Z

    更新日期:2006-03-07 00:00:00

  • Molecular cloning and chromosomal assignment of the gene for human Zn-alpha 2-glycoprotein.

    abstract::Genomic clones containing the human Zn-alpha 2-glycoprotein gene were isolated. Two of them were for the functional gene overlapped, and the other four were for two different pseudogenes (1 and 2) retaining exon-intron organization. The complete DNA sequence of the functional gene (9.3 kb) and its 5'- and 3'-flanking ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00211a004

    authors: Ueyama H,Deng HX,Ohkubo I

    更新日期:1993-12-07 00:00:00

  • Aluminum exchange between citrate and human serum transferrin and interaction with transferrin receptor 1.

    abstract::The kinetics and thermodynamics of Al(III) exchange between aluminum citrate (AlL) and human serum transferrin were investigated in the 7.2-8.9 pH range. The C-site of human serum apotransferrin in interaction with bicarbonate removes Al(III) from Al citrate with an exchange equilibrium constant K1 = (2.0 +/- 0.6) x 1...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020627p

    authors: Hémadi M,Miquel G,Kahn PH,El Hage Chahine JM

    更新日期:2003-03-18 00:00:00

  • Reaction of nitric oxide with the turnover intermediates of cytochrome c oxidase: reaction pathway and functional effects.

    abstract::The reactions of nitric oxide (NO) with the turnover intermediates of cytochrome c oxidase were investigated by combining amperometric and spectroscopic techniques. We show that the complex of nitrite with the oxidized enzyme (O) is obtained by reaction of both the "peroxy" (P) and "ferryl" (F) intermediates with stoi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000447k

    authors: Giuffrè A,Barone MC,Mastronicola D,D'Itri E,Sarti P,Brunori M

    更新日期:2000-12-19 00:00:00

  • Equilibrium and stop-flow kinetic studies of fluorescently labeled DNA substrates with DNA repair proteins XPA and replication protein A.

    abstract::Nucleotide excision repair (NER) is a crucial pathway in the maintenance of genome stability requiring at least two dozen proteins. XPA and RPA have essential roles in the damage recognition step of NER. To better understand the mechanism of their interactions with DNA, we utilized equilibrium and stop-flow kinetic ap...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011041q

    authors: Iakoucheva LM,Walker RK,van Houten B,Ackerman EJ

    更新日期:2002-01-08 00:00:00

  • Electronic absorption, EPR, and resonance raman spectroscopy of CooA, a CO-sensing transcription activator from R. rubrum, reveals a five-coordinate NO-heme.

    abstract::Electronic absorption, EPR, and resonance Raman spectroscopies revealed that CooA, the CO-sensing transcriptional regulator from Rhodospirillum rubrum, reacts with NO to form a five-coordinate NO-heme. NO must therefore displace both of the heme ligands from six-coordinate, low-spin Fe(II)CooA in forming five-coordina...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991378g

    authors: Reynolds MF,Parks RB,Burstyn JN,Shelver D,Thorsteinsson MV,Kerby RL,Roberts GP,Vogel KM,Spiro TG

    更新日期:2000-01-18 00:00:00

  • Temperature dependence of the reduction potential of CuA in carbon monoxide inhibited cytochrome c oxidase.

    abstract::The temperature dependence of the reduction potential of the CuA site in carbon monoxide inhibited cytochrome c oxidase has been measured with a spectroelectrochemical method adapted to the relatively weak near-infrared absorption of this copper ion. These measurements, together with parallel measurements on the 604-n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00349a024

    authors: Wang H,Blair DF,Ellis WR Jr,Gray HB,Chan SI

    更新日期:1986-01-14 00:00:00

  • Iron binding to horse spleen apoferritin: a vanadyl ENDOR spin probe study.

    abstract::The role of the protein shell in the formation of the hydrous ferric oxide core of ferritin is poorly understood. A VO2+ spin probe study was undertaken to characterize the initial complex of Fe2+ with horse spleen apoferritin (96% L-subunits). A competitive binding study of VO2+ and Fe2+ showed that the two metals co...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00102a012

    authors: Hanna PM,Chasteen ND,Rottman GA,Aisen P

    更新日期:1991-09-24 00:00:00

  • Modular mutagenesis of exons 1, 2, and 8 of a glutathione S-transferase from the mu class. Mechanistic and structural consequences for chimeras of isoenzyme 3-3.

    abstract::Exons 1 and 2 and exon 8 of the mu class GSH transferases from rat encode sequence-variable regions 1 and 4 of mu class isoenzymes, respectively. These two of four variable regions are located at the N- and C-termini of this isoenzyme class and impinge on the active site. In order to assess the influence of these vari...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00157a005

    authors: Zhang P,Liu S,Shan SO,Ji X,Gilliland GL,Armstrong RN

    更新日期:1992-10-27 00:00:00