Modular mutagenesis of exons 1, 2, and 8 of a glutathione S-transferase from the mu class. Mechanistic and structural consequences for chimeras of isoenzyme 3-3.

Abstract:

:Exons 1 and 2 and exon 8 of the mu class GSH transferases from rat encode sequence-variable regions 1 and 4 of mu class isoenzymes, respectively. These two of four variable regions are located at the N- and C-termini of this isoenzyme class and impinge on the active site. In order to assess the influence of these variable regions on the catalytic diversity of the class mu isoenzymes, seven chimeric isoenzymes were constructed by transplantation of the variable regions of the sequence of the type 4 subunit into the corresponding regions of the type 3 subunit. The chimeric isoenzymes exhibit unique catalytic properties. Replacement of all, or part, of variable region 4 of the type 3 subunit with that of the type 4 subunit results in chimeric catalysts with higher turnover numbers in nucleophilic aromatic substitution reactions. Analysis of the crystal structure of isoenzyme 3-3 [Ji, X., Zhang, P., Armstrong, R. N., & Gilliland, G. L. (1992) Biochemistry (preceding paper in this issue)] suggests that interaction of the flexible C-terminal tail with the N-terminal domain helps limit the rate of product release from the active site of isoenzyme 3-3 in this type of reaction. Substitution of all, or part, of the sequence-variable region 1 of subunit 3 with that of subunit 4 results in chimeric isoenzymes that mimic the high stereoselectivity but not the catalytic efficiency of isoenzyme 4-4 toward alpha,beta-unsaturated ketones.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Zhang P,Liu S,Shan SO,Ji X,Gilliland GL,Armstrong RN

doi

10.1021/bi00157a005

subject

Has Abstract

pub_date

1992-10-27 00:00:00

pages

10185-93

issue

42

eissn

0006-2960

issn

1520-4995

journal_volume

31

pub_type

杂志文章
  • Mechanistic studies examining the efficiency and fidelity of DNA synthesis by the 3TC-resistant mutant (184V) of HIV-1 reverse transcriptase.

    abstract::A single amino acid substitution from methionine-184 to valine (M184V) of HIV-1 reverse transcriptase (RT) evokes the 1000-fold 3TC (Lamivudine) resistance by the HIV-1 virus observed in the clinic. The M184V mutant HIV-1 RT was studied to assess its catalytic efficiency during single nucleotide incorporation using a ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990709m

    authors: Feng JY,Anderson KS

    更新日期:1999-07-20 00:00:00

  • Probes of hydrogen tunneling with horse liver alcohol dehydrogenase at subzero temperatures.

    abstract::The temperature dependence of steady-state kinetics has been studied with horse liver alcohol dehydrogenase (HLADH) using protonated and deuterated benzyl alcohol as substrates in methanol/water mixtures between +3 and -50 degrees C. Additionally, the competitive isotope effects, k(H)/k(T) and k(D)/k(T), were measured...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002075l

    authors: Tsai S,Klinman JP

    更新日期:2001-02-20 00:00:00

  • Effects of polyamines, polyamine analogs, and inhibitors of protein synthesis on spermidine-spermine N1-acetyltransferase gene expression.

    abstract::The key polyamine catabolizing enzyme spermidine-spermine N1-acetyltransferase (SSAT) is among the few genes known to be inducible by the natural polyamines. Certain polyamine analogs markedly exaggerate this response and thus provide useful tools for studying the underlying regulatory mechanisms. As shown here, the a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9612273

    authors: Fogel-Petrovic M,Vujcic S,Brown PJ,Haddox MK,Porter CW

    更新日期:1996-11-12 00:00:00

  • Limited proteolysis as a probe of the conformation and nucleic acid binding regions of nucleolin.

    abstract::Nucleolin, also called protein C23, is a RNA-associated protein implicated in the early stages of ribosome assembly. To study the general conformation and map the nucleic acid binding regions, rat nucleolin was subjected to limited proteolysis using trypsin and chymotrypsin in the presence or absence of poly(G). The c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00476a006

    authors: Olson MO,Kirstein MN,Wallace MO

    更新日期:1990-06-19 00:00:00

  • Molecular determinants of amyloid deposition in Alzheimer's disease: conformational studies of synthetic beta-protein fragments.

    abstract::The amyloid beta-protein (1-42) is a major constituent of the abnormal extracellular amyloid plaque that characterizes the brains of victims of Alzheimer's disease. Two peptides, with sequences derived from the previously unexplored C-terminal region of the beta-protein, beta 26-33 (H2N-SNKGAIIG-CO2H) and beta 34-42 (...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00463a003

    authors: Halverson K,Fraser PE,Kirschner DA,Lansbury PT Jr

    更新日期:1990-03-20 00:00:00

  • Specific effects of chloride on the photocycle of E194Q and E204Q mutants of bacteriorhodopsin as measured by FTIR spectroscopy.

    abstract::Low-temperature Fourier transform infrared spectroscopy has been used to study mutants of Glu194 and Glu204, two amino acids that are involved in proton release to the extracellular side of bacteriorhodopsin. Difference spectra of films of E194Q, E204Q, E194Q/E204Q, E9Q/E194Q/E204Q, and E9Q/E74Q/E194Q/E204Q at 243, 27...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025654u

    authors: Lazarova T,Sanz C,Sepulcre F,Querol E,Padrós E

    更新日期:2002-06-25 00:00:00

  • Details of mannitol transport in Escherichia coli elucidated by site-specific mutagenesis and complementation of phosphorylation site mutants of the phosphoenolpyruvate-dependent mannitol-specific phosphotransferase system.

    abstract::The mannitol transport protein (EIImtl) carries out translocation with concomitant phosphorylation of mannitol from the periplasm to the cytoplasm, at the expense of phosphoenolpyruvate (PEP). The phosphoryl group which is needed for this group translocation is sequentially transferred from PEP via two phosphorylation...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00221a006

    authors: van Weeghel RP,van der Hoek YY,Pas HH,Elferink M,Keck W,Robillard GT

    更新日期:1991-02-19 00:00:00

  • Hematin-hematin self-association states involved in the formation and reactivity of the malaria parasite pigment, hemozoin.

    abstract::The malaria parasite pigment, hemozoin, is a crystal of ferriprotoporphyrin IX (FP-Fe(III)), a product of hemoglobin digestion. Hemozoin formation is essential for FP-Fe(III) detoxification in the parasite; it is the main target of quinoline antimalarials and can modulate immune and inflammation responses. To gain fur...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100567j

    authors: Klonis N,Dilanian R,Hanssen E,Darmanin C,Streltsov V,Deed S,Quiney H,Tilley L

    更新日期:2010-08-10 00:00:00

  • Reaction of myeloperoxidase compound I with chloride, bromide, iodide, and thiocyanate.

    abstract::Myeloperoxidase plays a fundamental role in oxidant production by neutrophils. The enzyme uses hydrogen peroxide to oxidize chloride (Cl-), bromide (Br-), iodide (I-), and the pseudohalide thiocyanate (SCN-) to their respective hypohalous acids. This study for the first time presents transient kinetic measurements of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9818772

    authors: Furtmüller PG,Burner U,Obinger C

    更新日期:1998-12-22 00:00:00

  • Alteration of conformation and dynamics of bacteriorhodopsin induced by protonation of Asp 85 and deprotonation of Schiff base as studied by 13C NMR.

    abstract::According to previous X-ray diffraction studies, the D85N mutant of bacteriorhodopsin (bR) with unprotonated Schiff base assumes a protein conformation similar to that in the M photointermediate. We recorded (13)C NMR spectra of [3-(13)C]Ala- and [1-(13)C]Val-labeled D85N and D85N/D96N mutants at ambient temperature t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0015820

    authors: Kawase Y,Tanio M,Kira A,Yamaguchi S,Tuzi S,Naito A,Kataoka M,Lanyi JK,Needleman R,Saitô H

    更新日期:2000-11-28 00:00:00

  • Allosteric regulation of glycogen synthase kinase 3β: a theoretical study.

    abstract::Glycogen synthase kinase 3β (GSK-3β) is a serine-threonine kinase belonging to the CMGC family that plays a key role in many biological processes, such as glucose metabolism, cell cycle regulation, and proliferation. Like most protein kinases, GSK-3β is regulated via multiple pathways and sites. We performed all-atom ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100822q

    authors: Buch I,Fishelovitch D,London N,Raveh B,Wolfson HJ,Nussinov R

    更新日期:2010-12-28 00:00:00

  • Relevance of partially structured states in the non-classical secretion of acidic fibroblast growth factor.

    abstract::Acidic fibroblast growth factor (aFGF) is a signal peptide-less protein that is secreted into the extracellular compartment as part of a multiprotein release complex, consisting of aFGF, S100A13 (a calcium binding protein), and a 40 kDa (p40) form of synaptotagmin (Syt1), a protein that participates in the docking of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7002586

    authors: Rajalingam D,Graziani I,Prudovsky I,Yu C,Kumar TK

    更新日期:2007-08-14 00:00:00

  • Binding of polyaminocarboxylate chelators to the active-site copper inhibits the GSNO-reductase activity but not the superoxide dismutase activity of Cu,Zn-superoxide dismutase.

    abstract::In addition to its superoxide dismutase (SOD) activity, Cu,Zn-superoxide dismutase (CuZnSOD) catalyzes the reductive decomposition of S-nitroso-L-glutathione (GSNO) in the presence of thiols such as L-glutathione (GSH). The GSNO-reductase activity but not the superoxide dismutase (SOD) activity of CuZnSOD is inhibited...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061077o

    authors: Ye M,English AM

    更新日期:2006-10-24 00:00:00

  • Structure of FAD-bound L-aspartate oxidase: insight into substrate specificity and catalysis.

    abstract::L-Aspartate oxidase (Laspo) catalyzes the conversion of L-Asp to iminoaspartate, the first step in the de novo biosynthesis of NAD(+). This bacterial pathway represents a potential drug target since it is absent in mammals. The Laspo R386L mutant was crystallized in the FAD-bound catalytically competent form and its t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015939r

    authors: Bossi RT,Negri A,Tedeschi G,Mattevi A

    更新日期:2002-03-05 00:00:00

  • Subunits of RNA polymerase in function and structure. 7. Structure of premature core enzyme.

    abstract::The structure of premature core enzyme, an obligatory intermediate in both in vivo and in vitro assembly of Escherichia coli DNA-dependent RNA polymerase, was compared with that of native core enzyme. Though this assembled but inactive form of core enzyme harbors the gross conformation similar to that of native enzyme...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00573a006

    authors: Ishihama A,Aiba H,Saitoh T,Takahashi S

    更新日期:1979-03-20 00:00:00

  • Nuclear magnetic resonance studies on transfer ribonucleic acid: assignment of AU tertiary resonances.

    abstract::The hydrogen-bonded ring NH nuclear magnetic resonance (NMR) spectra of several transfer ribonucleic acid (RNA) species have been examined with particular emphasis on the extreme low-field portion. Betwen --13.8 and --15 ppm there are two extra resonances which are not derived from cloverleaf base pairs. A combined ap...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00585a025

    authors: Hurd RE,Reid BR

    更新日期:1979-09-04 00:00:00

  • Functional reconstitution of the olfactory membrane: incorporation of the olfactory adenylate cyclase in liposomes.

    abstract::Chemosensory cilia isolated from the olfactory epithelium of Rana catesbeiana were solubilized with Lubrol PX in the presence of supplementary lipid, forskolin, and sodium fluoride. Subsequent removal of the detergent by adsorption onto Biobeads SM2 results in the formation of proteoliposomes that display forskolin- a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00417a040

    authors: Anholt RR

    更新日期:1988-08-23 00:00:00

  • Characterization of the N-terminal targeting signal binding domain of the mitochondrial outer membrane receptor, Tom20.

    abstract::hTom20 is an outer mitochondrial membrane receptor involved in protein translocation. The cytosolic domain (aa30-145) and selected truncated versions of this domain were overexpressed and purified to study the structure-function relationship of this protein. Our studies reveal that the secondary structure of the cytos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980746y

    authors: Schleiff E,Turnbull JL

    更新日期:1998-09-22 00:00:00

  • An essential role for the extracellular domain of the Na,K-ATPase beta-subunit in cation occlusion.

    abstract::The role of the Na,K-ATPase beta-subunit in stabilization of ion-binding sites has been investigated. Treatment of the purified renal Na,K-ATPase with 0.25 M DTT at 40 degrees C for 1 h resulted in 50% loss of Rb occlusion, which correlates with partial reduction of S-S bridges in the extracellular portion of the beta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00077a029

    authors: Lutsenko S,Kaplan JH

    更新日期:1993-07-06 00:00:00

  • Catalysis of the oxidative folding of ribonuclease A by protein disulfide isomerase: dependence of the rate on the composition of the redox buffer.

    abstract::The velocity of the oxidative renaturation of reduced ribonuclease A catalyzed by protein disulfide isomerase (PDI) is strongly dependent on the composition of a glutathione/glutathione disulfide redox buffer. As with the uncatalyzed, glutathione-mediated oxidative folding of ribonuclease, the steady-state velocity of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00217a004

    authors: Lyles MM,Gilbert HF

    更新日期:1991-01-22 00:00:00

  • Identification of effector binding sites on S100 beta: studies with guanylate cyclase and p80, a retinal phosphoprotein.

    abstract::S100 beta is a calcium-binding protein, which regulates the activities of several enzymes and inhibits the phosphorylation of a variety of protein kinase C substrates in a calcium-dependent manner. The protein was recently found to activate a retinal membrane guanylate cyclase, and in this paper, we report that it inh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9802115

    authors: Pozdnyakov N,Margulis A,Sitaramayya A

    更新日期:1998-07-28 00:00:00

  • Triacylglycerol and phospholipid hydrolysis in human plasma lipoproteins: role of lipoprotein and hepatic lipase.

    abstract::To explore the interactions of triacylglycerol and phospholipid hydrolysis in lipoprotein conversions and remodeling, we compared the activities of lipoprotein and hepatic lipases on human VLDL, IDL, LDL, and HDL2. Triacylglycerol and phospholipid hydrolysis by each enzyme were measured concomitantly in each lipoprote...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00151a023

    authors: Deckelbaum RJ,Ramakrishnan R,Eisenberg S,Olivecrona T,Bengtsson-Olivecrona G

    更新日期:1992-09-15 00:00:00

  • Extended Recognition of the Histone H3 Tail by Histone Demethylase KDM5A.

    abstract::Human lysine demethylase KDM5A is a chromatin-modifying enzyme associated with transcriptional regulation, because of its ability to catalyze removal of methyl groups from methylated lysine 4 of histone H3 (H3K4me3). Amplification of KDM5A is observed in many cancers, including breast cancer, prostate cancer, hepatoce...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b01036

    authors: Petronikolou N,Longbotham JE,Fujimori DG

    更新日期:2020-02-11 00:00:00

  • Novel mechanistic class of fatty acid amide hydrolase inhibitors with remarkable selectivity.

    abstract::Fatty acid amide hydrolase (FAAH) is an integral membrane enzyme that degrades the fatty acid amide family of signaling lipids, including the endocannabinoid anandamide. Genetic or pharmacological inactivation of FAAH leads to analgesic, anti-inflammatory, anxiolytic, and antidepressant phenotypes in rodents without s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701378g

    authors: Ahn K,Johnson DS,Fitzgerald LR,Liimatta M,Arendse A,Stevenson T,Lund ET,Nugent RA,Nomanbhoy TK,Alexander JP,Cravatt BF

    更新日期:2007-11-13 00:00:00

  • Thymidylate synthetase catalyzed exchange of tritiumfrom [5-3H]-2'-deoxyuridylate for protons of water.

    abstract::Thymidylate synthetase catalyzes an exchange of tritium of [5-3H]dUMP for protons of water in the absence of CH2-H4folate. The turnover number for this reaction is some 45,000-fold lower than that of dTMP formation and Km is 1.2 X 10(-5) M, similar to the dissociation constant of the enzyme-dUMP complex determined by ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00580a016

    authors: Pogolotti AL Jr,Weill C,Santi DV

    更新日期:1979-06-26 00:00:00

  • Concentration of activated intermediates of the fructose-1,6-bisphosphate aldolase and triosephosphate isomerase reactions.

    abstract::As discovered by Grazi & Trombetta [Grazi, E., & Trombetta, G. (1978) Biochem. J. 175, 361], fructose-1,6-bisphosphate aldolase of rabbit muscle causes the slow formation of inorganic phosphate (Pi) and methylglyoxal when incubated with dihydroxyacetone phosphate (DHAP). In addition, these authors found an acid-labile...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00508a026

    authors: Iyengar R,Rose IA

    更新日期:1981-03-03 00:00:00

  • Inversion of receptor binding preferences by mutagenesis: free energy thermodynamic integration studies on sugar binding to L-arabinose binding proteins.

    abstract::The Escherichia coli L-arabinose-binding protein (ABP) participates as a specific receptor in the transport of L-arabinose, D-fucose, and D-galactose through the periplasmic space. The wild-type protein binds L-arabinose about 40 times more strongly than D-fucose. A mutation of the protein at position 108 (Met-->Leu) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00080a013

    authors: Zacharias M,Straatsma TP,McCammon JA,Quiocho FA

    更新日期:1993-07-27 00:00:00

  • Structural changes in cytochrome c upon hydrogen-deuterium exchange.

    abstract::The resonance Raman spectra of yeast ferri- and ferro-iso-1-cytochrome c dissolved in H2O and D2O are reported. Hydrogen exchange in the protein leads to distinct spectral changes of heme vibrational bands, particularly in the region between 670 and 710 cm-1 and at approximately 443 and approximately 450 cm-1. The lat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00214a013

    authors: Hildebrandt P,Vanhecke F,Heibel G,Mauk AG

    更新日期:1993-12-28 00:00:00

  • Solution structure of BmKalphaIT01, an alpha-insect toxin from the venom of the Chinese scorpion Buthus martensii Karsch.

    abstract::The solution structure of an alpha-insect toxin from Buthus martensii Karsch, BmKalphaIT01, has been determined by two-dimensional NMR spectroscopy and molecular modeling techniques. Combining the sequence homology comparison and toxicity bioassays, BmKalphaIT01 has been suggested to be a natural mutant of alpha-insec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7006788

    authors: Tong X,Zhu J,Ma Y,Chen X,Wu G,He F,Cao C,Wu H

    更新日期:2007-10-09 00:00:00

  • Interactions of a Bacterial Cu(I)-ATPase with a Complex Lipid Environment.

    abstract::Phospholipids and sterols play multiple roles in cells. In addition to establishing barriers between compartments, they also provide the matrix for assembly and function of a large variety of catalytic processes. Lipid composition is a highly regulated feature of biological membranes, yet its implications for membrane...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00326

    authors: Autzen HE,Koldsø H,Stansfeld PJ,Gourdon P,Sansom MSP,Nissen P

    更新日期:2018-07-17 00:00:00