Elevation of Francisella philomiragia subsp. noatunensis Mikalsen et al. (2007) to Francisella noatunensis comb. nov. [syn. Francisella piscicida Ottem et al. (2008) syn. nov.] and characterization of Francisella noatunensis subsp. orientalis subsp. nov.,

Abstract:

AIMS:This study was conducted to clarify the taxonomic status of Francisella sp. strain Ehime-1, a fish pathogen, in relation to the fish pathogens F. piscicida and F. philomiragia subsp. noatunensis and to F. philomiragia subsp. philomiragia. METHODS AND RESULTS:Francisella sp. Ehime-1 was compared to F. piscicida, F. philomiragia subsp. noatunensis and several F. philomiragia subsp. philomiragia isolates through sequencing of the 16S rRNA-gene and several house-keeping genes and determination of biochemical and phenotypic properties. Results show that F. piscicida is indistinguishable from F. philomiragia subsp. noatunensis by sequence and phenotypic traits. Francisella sp. Ehime-1 and F. philomiragia subsp. noatunensis are clearly separated from F. philomiragia. Francisella sp. Ehime-1 is biochemically, phenotypically and genetically different from F. philomiragia subsp. noatunensis (=F. piscicida), but DNA-DNA hybridization does not clearly support establishment as a separate species (level of relatedness 64% and 73.4%, mean 68.7%). CONCLUSIONS:We propose to elevate F. philomiragia subsp. noatunensis to species rank as F. noatunensis comb. nov., while F. piscicida is considered a heterotypic synonym of F. noatunensis comb. nov. Evidence suggests that Francisella sp. Ehime-1 represents a novel subspecies of F. noatunensis, for which the name F. noatunensis subsp. orientalis subsp. nov. is proposed (=DSM21254(T), = LMG24544(T)). SIGNIFICANCE AND IMPACT OF THE STUDY:This study contributes to the taxonomy and characteristics of fish-pathogenic Francisella spp.

journal_name

J Appl Microbiol

authors

Ottem KF,Nylund A,Karlsbakk E,Friis-Møller A,Kamaishi T

doi

10.1111/j.1365-2672.2008.04092.x

subject

Has Abstract

pub_date

2009-04-01 00:00:00

pages

1231-43

issue

4

eissn

1364-5072

issn

1365-2672

pii

JAM4092

journal_volume

106

pub_type

杂志文章
  • Viability of Escherichia coli O157:H7 in natural river water determined by the use of flow cytometry.

    abstract::The enzymatic activity and viability of Escherichia coli O157:H7 in natural river water was determined by flow cytometry. River water was collected at two sites (an agricultural area and an industrial area) on the Aigawa River (Osaka, Japan). To facilitate estimation of the physiology of E. coli O157 in natural river ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2000.00960.x

    authors: Tanaka Y,Yamaguchi N,Nasu M

    更新日期:2000-02-01 00:00:00

  • Glutamate dehydrogenase activity in lactobacilli and the use of glutamate dehydrogenase-producing adjunct Lactobacillus spp. cultures in the manufacture of cheddar cheese.

    abstract:AIMS:The study was undertaken to investigate the occurrence of glutamate dehydrogenase activity in different species of lactobacilli, and to determine, in a series of cheese-making trials, the effects of glutamate dehydrogenase-producing adjunct cultures on sensory attribute development during the maturation of cheddar...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2006.03017.x

    authors: Williams AG,Withers SE,Brechany EY,Banks JM

    更新日期:2006-11-01 00:00:00

  • Survival of Listeria monocytogenes in commercial food-processing equipment cleaning solutions and subsequent sensitivity to sanitizers and heat.

    abstract:AIMS:To determine the ability of Listeria monocytogenes to survive exposure to commercial food-processing equipment cleaning solutions and subsequent treatment with sanitizers or heat. METHODS AND RESULTS:Cells of five strains of L. monocytogenes were suspended in 1% solutions of eight commercial cleaners (pH 7.1-12.5...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2002.01488.x

    authors: Taormina PJ,Beuchat LR

    更新日期:2002-01-01 00:00:00

  • Phylogenetic analysis of Bacillus thuringiensis serovars based on 16S rRNA gene restriction fragment length polymorphisms.

    abstract:AIMS:To determine the 16S rRNA gene fingerprints of Bacillus thuringiensis strains to reveal phylogenetic relationships among them. METHODS AND RESULTS:Using 16S rRNA gene restriction fragment length polymorphisms generated by HindIII and EcoRI, 86 Bacillus thuringiensis strains were classified. This includes 80 B. th...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2001.01227.x

    authors: Joung KB,Côté JC

    更新日期:2001-01-01 00:00:00

  • Combination of antagonistic yeasts with two food additives for control of brown rot caused by Monilinia fructicola on sweet cherry fruit.

    abstract:AIMS:To evaluate beneficial effect of two food additives, ammonium molybdate (NH4-Mo) and sodium bicarbonate (NaBi), on antagonistic yeasts for control of brown rot caused by Monilinia fructicola in sweet cherry fruit under various storage conditions. The mechanisms of action by which food additives enhance the efficac...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2005.02821.x

    authors: Qin GZ,Tian SP,Xu Y,Chan ZL,Li BQ

    更新日期:2006-03-01 00:00:00

  • Interactions of Salmonella enterica with lettuce leaves.

    abstract:AIMS:To investigate the interactions of Salmonella enterica with abiotic and plant surfaces and their effect on the tolerance of the pathogen to various stressors. METHODS AND RESULTS:Salmonella strains were tested for their ability to form biofilm in various growth media using a polystyrene plate model. Strong biofil...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2009.04152.x

    authors: Kroupitski Y,Pinto R,Brandl MT,Belausov E,Sela S

    更新日期:2009-06-01 00:00:00

  • Effects of glutaraldehyde-didecyldimethylammonium bromide combined disinfectant on the cell surface of Staphylococcus aureus.

    abstract:AIMS:The effects of a new glutaraldehyde-didecyldimethylammonium bromide combination disinfectant (GD) on the cell surface of Staphylococcus aureus, a representative Gram-positive bacterium, were investigated in this study. METHODS AND RESULTS:Results of bacterial surface structural analysis showed that GD significant...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.13702

    authors: Lin W,Yi J,Zhang Y,Deng Z,Chen Q,Niu B

    更新日期:2018-05-01 00:00:00

  • Degradation of phenanthrene and anthracene by Nocardia otitidiscaviarum strain TSH1, a moderately thermophilic bacterium.

    abstract:AIMS:The metabolism of phenanthrene and anthracene by a moderate thermophilic Nocardia otitidiscaviarum strain TSH1 was examined. METHODS AND RESULTS:When strain TSH1 was grown in the presence of anthracene, four metabolites were identified as 1,2-dihydroxy-1,2-dihydroanthracene, 3-(2-carboxyvinyl)naphthalene-2-carbox...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2008.03753.x

    authors: Zeinali M,Vossoughi M,Ardestani SK

    更新日期:2008-08-01 00:00:00

  • Microbiological characterization and probiotic potential of koko and koko sour water, African spontaneously fermented millet porridge and drink.

    abstract:AIMS:To identify and examine the diversity of predominant lactic acid bacteria (LAB) in koko and koko sour water (KSW) from different Ghanaian production sites with regard to pattern of fermentation (API 50 CHL), genotype, antimicrobial activity, and resistance to low pH and bile salts. METHODS AND RESULTS:In total 21...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2004.02162.x

    authors: Lei V,Jakobsen M

    更新日期:2004-01-01 00:00:00

  • Activity and composition of ammonia oxidizing bacterial communities and emission dynamics of NH3 and N2O in a compost reactor treating organic household waste.

    abstract:AIMS:To monitor emissions of NH(3) and N(2)O during composting and link these to ammonia oxidation rates and the community structure of ammonia oxidizing bacteria (AOB). METHODS AND RESULTS:A laboratory-scale compost reactor treating organic household waste was run for 2 months. NH(3) emissions peaked when pH started ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2008.04111.x

    authors: Jarvis A,Sundberg C,Milenkovski S,Pell M,Smårs S,Lindgren PE,Hallin S

    更新日期:2009-05-01 00:00:00

  • Isolation and identification of Burkholderia pseudomallei from soil using selective culture techniques and the polymerase chain reaction.

    abstract::An environmental soil survey to detect Burkholderia pseudomallei was performed during the dry and wet seasons in Darwin, Northern Territory, Australia. Soil was sampled at regular intervals during a 15-month period at different depths from areas which were representative of the local, soil environment. Selective cultu...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:

    authors: Brook MD,Currie B,Desmarchelier PM

    更新日期:1997-05-01 00:00:00

  • Soil microbiota respond to green manure in organic vineyards.

    abstract:AIMS:The aim of this work was to investigate the effects of biodynamic management with and without the addition of green manure, in comparison with organic management, on the microbiota in vineyards soil. METHODS AND RESULTS:High throughput sequencing was used to compare the taxonomic structure of the soil bacterial a...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.13606

    authors: Longa CMO,Nicola L,Antonielli L,Mescalchin E,Zanzotti R,Turco E,Pertot I

    更新日期:2017-12-01 00:00:00

  • Evaluation of ATP bioluminescence-based methods for hygienic assessment in fish industry.

    abstract:AIMS:To evaluate ATP bioluminescence-based hygiene monitoring systems under conditions relevant to fish processing environments. METHODS AND RESULTS:The ATP bioluminescence of fish fractions that are potentially present after insufficient cleaning of fish processing environments was determined. Different fractions and...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.14292

    authors: Møretrø T,Normann MA,Saebø HR,Langsrud S

    更新日期:2019-07-01 00:00:00

  • Evaluating the role of total organic carbon in predicting the treatment efficacy of biosand filters for the removal of Vibrio cholerae in drinking water during startup.

    abstract:AIMS:In biosand filters (BSF), treatment is largely driven by the development of a biolayer (schmutzdecke) which establishes itself during the startup phase. In this study, the effect of changing influent total organic carbon (TOC) loading on the removal efficiency of Vibrio cholerae in laboratory-operated BSFs was qua...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.13909

    authors: Danley-Thomson AA,Huang EC,Worley-Morse T,Gunsch CK

    更新日期:2018-09-01 00:00:00

  • Development and comparison of SYBR Green quantitative real-time PCR assays for detection and enumeration of sulfate-reducing bacteria in stored swine manure.

    abstract:AIMS:To develop and evaluate primer sets targeted to the dissimilatory sulfite reductase gene (dsrA) for use in quantitative real-time PCR detection of sulfate-reducing bacteria (SRB) in stored swine manure. METHODS AND RESULTS:Degenerate primer sets were developed to detect SRB in stored swine manure. These were comp...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2008.03900.x

    authors: Spence C,Whitehead TR,Cotta MA

    更新日期:2008-12-01 00:00:00

  • A modified indirect mathematical model for evaluation of ethanol production efficiency in industrial-scale continuous fermentation processes.

    abstract:AIMS:To calculate fermentation efficiency in a continuous ethanol production process, we aimed to develop a robust mathematical method based on the analysis of metabolic by-product formation. METHODS AND RESULTS:This method is in contrast to the traditional way of calculating ethanol fermentation efficiency, where the...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.13240

    authors: Canseco Grellet MA,Castagnaro A,Dantur KI,De Boeck G,Ahmed PM,Cárdenas GJ,Welin B,Ruiz RM

    更新日期:2016-10-01 00:00:00

  • Antibacterial activity against Ralstonia solanacearum of the lipopeptides secreted from the Bacillus amyloliquefaciens strain FJAT-2349.

    abstract:AIMS:The aims of this study were to identify the structure of antibacterial lipopeptide (LP) produced by Bacillus amyloliquefaciens strain FJAT-2349, to analyse the effects of the culture medium and temperature on LP production and to assess the biocontrol efficiency of the LPs against tomato bacterial wilt. METHODS A...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.14213

    authors: Chen MC,Wang JP,Zhu YJ,Liu B,Yang WJ,Ruan CQ

    更新日期:2019-05-01 00:00:00

  • A Streptococcus uberis transposon mutant screen reveals a negative role for LiaR homologue in biofilm formation.

    abstract:AIMS:The environmental pathogen Streptococcus uberis causes intramammary infections in dairy cows. Because biofilm growth might contribute to Strep. uberis mastitis, we conducted a biological screen to identify genes potentially involved in the regulation of biofilm growth. METHODS AND RESULTS:By screening a transposo...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.12664

    authors: Salomäki T,Karonen T,Siljamäki P,Savijoki K,Nyman TA,Varmanen P,Iivanainen A

    更新日期:2015-01-01 00:00:00

  • Application of Saccharomyces cerevisiae var. boulardii in food processing: a review.

    abstract::Probiotics are increasingly being added to food in order to develop products with health-promoting properties. Particularly, Saccharomyces cereviceae var. boulardii yeast is recently being investigated like a starting-culture for development of functional and probiotic foods. Although the literature is abundant on the...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/jam.14037

    authors: Lazo-Vélez MA,Serna-Saldívar SO,Rosales-Medina MF,Tinoco-Alvear M,Briones-García M

    更新日期:2018-10-01 00:00:00

  • Enrichment and identification of bacteria capable of reducing chemical oxygen demand of anaerobically treated molasses spent wash.

    abstract:AIMS:The aim of this study was to isolate and identify bacterial strains capable of using recalcitrant compounds of molasses spent wash as sole carbon source from the soils of abandoned sites of distillery effluent discharge and characterize their ability of reducing the chemical oxygen demand (COD) of the spent wash. ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2004.02289.x

    authors: Ghosh M,Verma SC,Mengoni A,Tripathi AK

    更新日期:2004-01-01 00:00:00

  • Kocuria SM1 controls vibriosis in rainbow trout (Oncorhynchus mykiss, Walbaum).

    abstract:AIMS:To develop probiotics for the control of vibriosis caused by Vibrio anguillarum and Vibrio ordalii in finfish. METHODS AND RESULTS:Kocuria SM1, isolated from the digestive tract of rainbow trout, was administered orally to rainbow trout (Oncorhynchus mykiss) for 2 weeks at a dose equivalent to c. 10(8) cells per ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2009.04618.x

    authors: Sharifuzzaman SM,Austin B

    更新日期:2010-06-01 00:00:00

  • Detection of quorum sensing signal molecules in the family Vibrionaceae.

    abstract:AIMS:The aim of this study was to detect the production of three kinds of quorum sensing (QS) signal molecules, i.e. the N-acyl-homoserine lactone (AHL), the autoinducer-2 (AI-2) and the cholerae autoinducer-1-like (CAI-1-like) molecules in 25 Vibrionaceae strains. METHODS AND RESULTS:The QS signal molecules in 25 Vib...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2011.04998.x

    authors: Yang Q,Han Y,Zhang XH

    更新日期:2011-06-01 00:00:00

  • Effects of graded levels of tannin-containing tropical tree leaves on in vitro rumen fermentation, total protozoa and methane production.

    abstract:AIMS:This study was carried out to determine the effect of graded levels of tannin-containing tropical tree leaves, Autocarpus integrifolis, Azardirachta indica and Ficus bengalensis, on the in vitro rumen fermentation pattern, total protozoa and methane suppression in order to establish the optimum dose of these leave...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.12723

    authors: Bhatta R,Saravanan M,Baruah L,Prasad CS

    更新日期:2015-03-01 00:00:00

  • Monitoring of Staphylococcus xylosus DSM 20266 added as starter during fermentation and ripening of soppressata molisana, a typical Italian sausage.

    abstract:AIMS:"Soppressata molisana", a fermented sausage produced in southern Italy, is commonly obtained without starter addition. However, the use of starter cultures is more and more recommended in meat fermentation processes in order to guarantee stable production performance. In this study, the survival of the Staphylococ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2002.01512.x

    authors: Di Maria S,Basso AL,Santoro E,Grazia L,Coppola R

    更新日期:2002-01-01 00:00:00

  • Protein-protein interaction network and potential drug target candidates of Streptococcus suis.

    abstract:AIMS:This study aimed to explore potential drug targets of Streptococcus suis at the system level. METHODS AND RESULTS:A homologous protein mapping method was used in the construction of a protein-protein interaction (PPI) network of S. suis, which presented 1147 nonredundant interaction pairs among 286 proteins. The ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.14950

    authors: Tan MF,Zou G,Wei Y,Liu WQ,Li HQ,Hu Q,Zhang LS,Zhou R

    更新日期:2020-11-29 00:00:00

  • Effect of environmental and physiological factors on the antibacterial activity of Curvularia haloperoxidase system against Escherichia coli.

    abstract:AIMS:The aim of this study was to investigate the influence of environmental and physiological factors on the susceptibility of Escherichia coli to the Curvularia haloperoxidase system. METHODS AND RESULTS:The Curvularia haloperoxidase system is a novel enzyme system that produces reactive oxygen species which have an...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2004.02491.x

    authors: Hansen EH,Schäfer T,Molin S,Gram L

    更新日期:2005-01-01 00:00:00

  • Development of a novel selective agar for the isolation and detection of Bacillus anthracis.

    abstract:AIMS:The aim of this study was to develop a novel selective agar for the specific isolation and detection of Bacillus anthracis. METHODS AND RESULTS:Based on published data on antibiotic resistance and susceptibility of B. anthracis and other closely related species of the Bacillus cereus sensu lato group, a new selec...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.14615

    authors: Rohde A,Papp S,Feige P,Grunow R,Kaspari O

    更新日期:2020-08-01 00:00:00

  • Protective effect of calcium on inactivation of Escherichia coli by high hydrostatic pressure.

    abstract::The effect of divalent cations on the inactivation of Escherichia coli by high hydrostatic pressure was investigated. The presence of 0.5 mmol l-1 of CaCl2, MgCl2, MnCl2 and FeCl2 reduced pressure inactivation of E. coli MG1655, while 0.5 mmol l-1 of ZnCl2, NiCl2, CuCl2 and CoCl2 increased inactivation. Baroprotection...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.1998.00577.x

    authors: Hauben KJ,Bernaerts K,Michiels CW

    更新日期:1998-10-01 00:00:00

  • Pathogenic factors in Candida biofilm-related infectious diseases.

    abstract::Candida albicans is a commonly found member of the human microflora and is a major human opportunistic fungal pathogen. A perturbation of the microbiome can lead to infectious diseases caused by various micro-organisms, including C. albicans. Moreover, the interactions between C. albicans and bacteria are considered t...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/jam.13330

    authors: Hirota K,Yumoto H,Sapaar B,Matsuo T,Ichikawa T,Miyake Y

    更新日期:2017-02-01 00:00:00

  • Investigation into the prevalence, persistence and antibiotic resistance profiles of staphylococci isolated from euro currency.

    abstract:AIMS:The study set out to sample € 10 banknotes for the presence of coagulase-positive staphylococci (CPS) such as Staphylococcus aureus (S. aureus) and coagulase-negative staphylococci (CoNS) in Southern Ireland, to assess the levels of antibiotic resistance among those isolated, and determine the persistence of S. au...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.12247

    authors: Gabriel EM,Coffey A,O'Mahony JM

    更新日期:2013-08-01 00:00:00