Large-scale profiling of archival lymph nodes reveals pervasive remodeling of the follicular lymphoma methylome.

Abstract:

:Emerging technologies allow broad profiling of the cancer genome for differential DNA methylation relative to benign cells. Herein, bisulfite-modified DNA from lymph nodes with either reactive hyperplasia or follicular lymphoma (FL) were analyzed using a commercial C/UpG genotyping assay. Two hundred fifty-nine differentially methylated targets (DMT) distributed among 183 unique genes were identified in FL. Comparison of matched formalin-fixed, paraffin-embedded and frozen surgical pathology replicates showed the complete preservation of the cancer methylome among differently archived tissue specimens. Analysis of the DMT profile is consistent with a pervasive epigenomic remodeling process in FL that affects predominantly nonlymphoid genes.

journal_name

Cancer Res

journal_title

Cancer research

authors

Killian JK,Bilke S,Davis S,Walker RL,Killian MS,Jaeger EB,Chen Y,Hipp J,Pittaluga S,Raffeld M,Cornelison R,Smith WI Jr,Bibikova M,Fan JB,Emmert-Buck MR,Jaffe ES,Meltzer PS

doi

10.1158/0008-5472.CAN-08-2984

subject

Has Abstract

pub_date

2009-02-01 00:00:00

pages

758-64

issue

3

eissn

0008-5472

issn

1538-7445

pii

0008-5472.CAN-08-2984

journal_volume

69

pub_type

杂志文章
  • Tumor-specific anti-epidermal growth factor receptor variant III monoclonal antibodies: use of the tyramine-cellobiose radioiodination method enhances cellular retention and uptake in tumor xenografts.

    abstract::Amplification and rearrangement of the epidermal growth factor receptor (EGFR) gene are characteristics of many types of tumors. One class of EGFR mutations, EGFRvIII, is characterized by an in-frame deletion resulting in a truncated external domain of the receptor. EGFRvIII was first identified in a subset of gliomas...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Reist CJ,Archer GE,Kurpad SN,Wikstrand CJ,Vaidyanathan G,Willingham MC,Moscatello DK,Wong AJ,Bigner DD,Zalutsky MR

    更新日期:1995-10-01 00:00:00

  • Induction of apoptosis in leukemic cells by homovanillic acid derivative, capsaicin, through oxidative stress: implication of phosphorylation of p53 at Ser-15 residue by reactive oxygen species.

    abstract::Capsaicin (N-vanillyl-8-methyl-1-nonenamide) is a homovanillic acid derivative found in pungent fruits. Several investigators have reported the ability of capsaicin to inhibit events associated with the promotion of cancer. However, the effects of capsaicin on human leukemic cells have never been investigated. We inve...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.can-03-1670

    authors: Ito K,Nakazato T,Yamato K,Miyakawa Y,Yamada T,Hozumi N,Segawa K,Ikeda Y,Kizaki M

    更新日期:2004-02-01 00:00:00

  • Chemoprevention of intestinal polyposis in the Apcdelta716 mouse by rofecoxib, a specific cyclooxygenase-2 inhibitor.

    abstract::Mutations in the human adenomatous polyposis (APC) gene are causative for familial adenomatous polyposis (FAP), a rare condition in which numerous colonic polyps arise during puberty and, if left untreated, lead to colon cancer. The APC gene is a tumor suppressor that has been termed the "gatekeeper gene" for colon ca...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Oshima M,Murai N,Kargman S,Arguello M,Luk P,Kwong E,Taketo MM,Evans JF

    更新日期:2001-02-15 00:00:00

  • MicroRNA miR-29 modulates expression of immunoinhibitory molecule B7-H3: potential implications for immune based therapy of human solid tumors.

    abstract::B7-H3, a surface immunomodulatory glycoprotein, inhibits natural killer cells and T cells. The monoclonal antibody (mAb) 8H9 is specific for 4Ig-B7-H3, the long and principal form of B7-H3. Early results from radioimmunotherapy using 8H9 have shown promise in patients with metastatic solid tumors to the central nervou...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-08-4517

    authors: Xu H,Cheung IY,Guo HF,Cheung NK

    更新日期:2009-08-01 00:00:00

  • Purification of an anemia-inducing factor from human placenta and its application to diagnosis of malignant neoplasms.

    abstract::An anemia-inducing substance was isolated from the human placenta and designated placental anemia-inducing factor (PAIF). An amount of 2.8 mg was purified from about 70 total placentas (total wet weight, 42 kg). PAIF caused hemolysis of human erythrocytes in vitro and reduced the number of erythrocytes in rabbits to 8...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Oh-Uti K,Inoue S,Minato S

    更新日期:1980-05-01 00:00:00

  • Thymidine as a kinetic and biochemical modulator of 1-beta-D-arabinofuranosylcytosine in human acute nonlymphocytic leukemia.

    abstract::We have carried out a clinical trial in which patients with relapsed leukemia were treated with thymidine (dThd) prior to and concomitantly with the administration of 1-beta-D-arabinofuranosylcytosine (ara-C) in an effort to kinetically and biochemically modulate the leukemic cells with two objectives: (a) to increase...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Blumenreich MS,Chou TC,Andreeff M,Vale K,Clarkson BD,Young CW

    更新日期:1984-02-01 00:00:00

  • Experimental photoimmunotherapy of hepatic metastases of colorectal cancer with a 17.1A chlorin(e6) immunoconjugate.

    abstract::Photoimmunotherapy (using a monoclonal antibody-targeted photosensitizer and red light) may be a strategy to overcome the limitations inherent in photodynamic therapy of liver tumors. The aims of this study were (a) to test the efficacy of selective treatment of hepatic metastases of colorectal cancer in an orthotopic...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Del Governatore M,Hamblin MR,Shea CR,Rizvi I,Molpus KG,Tanabe KK,Hasan T

    更新日期:2000-08-01 00:00:00

  • The original Pathologische Anatomie Leiden-Endothelium monoclonal antibody recognizes a vascular endothelial growth factor binding site within neuropilin-1.

    abstract::For two decades, the antigen recognized by the Pathologische Anatomie Leiden-Endothelium (PAL-E) monoclonal antibody, a standard vascular endothelial cell marker, has remained elusive. Here, we used a combinatorial phage display-based approach ("epitope mapping") to select peptides binding to the original PAL-E antibo...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-07-2737

    authors: Jaalouk DE,Ozawa MG,Sun J,Lahdenranta J,Schlingemann RO,Pasqualini R,Arap W

    更新日期:2007-10-15 00:00:00

  • Ultrastructure of the thyroid gland in goitered coho salmon (Oncorhynchus kisutch).

    abstract::Thyroid tissues in coho salmon (Oncorhynchus kisutch) goiters showed marked regional variation in structure and ultrastructure. For the most part the follicles were small, were composed of tall epithelial cells, and contained little or no colloid material. The follicle epithelial cells were essentially similar in fine...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Leatherland JF,Moccia R,Sonstegard R

    更新日期:1978-01-01 00:00:00

  • hnRNP A2/B1 modulates epithelial-mesenchymal transition in lung cancer cell lines.

    abstract::Heterogeneous nuclear ribonucleoprotein A2/B1 (hnRNP A2/B1) has been reported to be overexpressed in lung cancer and in other cancers such as breast, pancreas, and liver. However, a mechanism linking hnRNP A2/B1 overexpression and progression to cancer has not yet been definitively established. To elucidate this mecha...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-10-0860

    authors: Tauler J,Zudaire E,Liu H,Shih J,Mulshine JL

    更新日期:2010-09-15 00:00:00

  • Tumorigenicity of the cyc- variant of the S49 murine lymphoma deficient in the Gs-alpha subunit of adenylate cyclase.

    abstract::S49 cyc- lymphoma cells contain a mutation resulting in loss of a functional guanine nucleotide regulatory protein rendering their adenylate cyclase refractory to most stimuli. S49 wild-type and cyc- clones were used in the present study to investigate the possible association of altered cAMP metabolism with tumorigen...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Stadel JM,Johnson RK,Mirabelli CK,Powers DA,Sung CM,Faucette LF,McCabe FL,Crooke ST

    更新日期:1988-02-01 00:00:00

  • Minor Changes in Expression of the Mismatch Repair Protein MSH2 Exert a Major Impact on Glioblastoma Response to Temozolomide.

    abstract::Glioblastoma (GBM) is often treated with the cytotoxic drug temozolomide, but the disease inevitably recurs in a drug-resistant form after initial treatment. Here, we report that in GBM cells, even a modest decrease in the mismatch repair (MMR) components MSH2 and MSH6 have profound effects on temozolomide sensitivity...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-14-3616

    authors: McFaline-Figueroa JL,Braun CJ,Stanciu M,Nagel ZD,Mazzucato P,Sangaraju D,Cerniauskas E,Barford K,Vargas A,Chen Y,Tretyakova N,Lees JA,Hemann MT,White FM,Samson LD

    更新日期:2015-08-01 00:00:00

  • Inhibition of human malignant neuroblastoma cell DNA synthesis by lipoxygenase metabolites of arachidonic acid.

    abstract::In vivo studies have shown that inhibitors of cyclooxygenase metabolism of arachidonic acid may diminish growth and metastasis of certain tumors. Because cyclooxygenase inhibition may increase the production of lipoxygenase products of arachidonic acid metabolism, we have investigated the effect of two such products, ...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Werner EJ,Walenga RW,Dubowy RL,Boone S,Stuart MJ

    更新日期:1985-02-01 00:00:00

  • Endogenous interleukin-4 promotes tumor development by increasing tumor cell resistance to apoptosis.

    abstract::The increase of interleukin-4 (IL-4) level in tumor environment and the up-regulation of IL-4 receptor (IL-4R) on tumor cells have been long observed. However, their significance for tumor development has not been investigated. Here, we found that endogenous IL-4 promotes tumor growth because neutralizing IL-4 by 11B1...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-08-0449

    authors: Li Z,Jiang J,Wang Z,Zhang J,Xiao M,Wang C,Lu Y,Qin Z

    更新日期:2008-11-01 00:00:00

  • Urokinase Receptor Promotes Skin Tumor Formation by Preventing Epithelial Cell Activation of Notch1.

    abstract::The urokinase-type plasminogen activator receptor (uPAR) has a well-established role in cancer progression, but it has been little studied at earlier stages of cancer initiation. Here, we show that uPAR deficiency in the mouse dramatically reduces susceptibility to the classical two-stage protocol of inflammatory skin...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-15-0378

    authors: Mazzieri R,Pietrogrande G,Gerasi L,Gandelli A,Colombo P,Moi D,Brombin C,Ambrosi A,Danese S,Mignatti P,Blasi F,D'Alessio S

    更新日期:2015-11-15 00:00:00

  • Characterization of the antitumor effects of the selective farnesyl protein transferase inhibitor R115777 in vivo and in vitro.

    abstract::R115777 [(B)-6-[amino(4-chlorophenyl)(1-methyl-1H-imidazol-5-yl)-methyl]-4-(3-chlorophenyl)-1-methyl-2(1H)-quinolinone] is a potent and selective inhibitor of farnesyl protein transferase with significant antitumor effects in vivo subsequent to oral administration in mice. In vitro, using isolated human farnesyl prote...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: End DW,Smets G,Todd AV,Applegate TL,Fuery CJ,Angibaud P,Venet M,Sanz G,Poignet H,Skrzat S,Devine A,Wouters W,Bowden C

    更新日期:2001-01-01 00:00:00

  • The proteasome inhibitor bortezomib acts independently of p53 and induces cell death via apoptosis and mitotic catastrophe in B-cell lymphoma cell lines.

    abstract::Bortezomib is a proteasome inhibitor with proven efficacy in multiple myeloma and non-Hodgkin's lymphoma. This study reports the effects of bortezomib in B-cell lymphoma cell lines with differing sensitivity to bortezomib to investigate factors that influence sensitivity. Bortezomib induced a time- and concentration-d...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-06-3254

    authors: Strauss SJ,Higginbottom K,Jüliger S,Maharaj L,Allen P,Schenkein D,Lister TA,Joel SP

    更新日期:2007-03-15 00:00:00

  • Microenvironment-Modulated Metastatic CD133+/CXCR4+/EpCAM- Lung Cancer-Initiating Cells Sustain Tumor Dissemination and Correlate with Poor Prognosis.

    abstract::Metastasis is the main reason for lung cancer-related mortality, but little is known about specific determinants of successful dissemination from primary tumors and metastasis initiation. Here, we show that CD133(+)/CXCR4(+) cancer-initiating cells (CIC) directly isolated from patient-derived xenografts (PDX) of non-s...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-14-3781

    authors: Bertolini G,D'Amico L,Moro M,Landoni E,Perego P,Miceli R,Gatti L,Andriani F,Wong D,Caserini R,Tortoreto M,Milione M,Ferracini R,Mariani L,Pastorino U,Roato I,Sozzi G,Roz L

    更新日期:2015-09-01 00:00:00

  • Body size and breast cancer prognosis: a statistical explanation of the discrepancies.

    abstract::A historical cohort of 68 female breast cancer patients from one institution who were enrolled in a multicenter randomized controlled trial between 1971 and 1973 were followed up to the beginning of 1986. Weight and height at the time of mastectomy were transformed into two indices of body size, namely the Quetelet In...

    journal_title:Cancer research

    pub_type: 临床试验,杂志文章,多中心研究

    doi:

    authors: Suissa S,Pollak M,Spitzer WO,Margolese R

    更新日期:1989-06-01 00:00:00

  • Live-cell imaging of invasion and intravasation in an artificial microvessel platform.

    abstract::Methods to visualize metastasis exist, but additional tools to better define the biologic and physical processes underlying invasion and intravasation are still needed. One difficulty in studying metastasis stems from the complexity of the interface between the tumor microenvironment and the vascular system. Here, we ...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-14-1042

    authors: Wong AD,Searson PC

    更新日期:2014-09-01 00:00:00

  • Bovine herpesvirus 4 induces apoptosis of human carcinoma cell lines in vitro and in vivo.

    abstract::The idea of using oncolytic viruses for the treatment of cancers was proposed a century ago. During the last two decades, viruses able to replicate specifically in cancer cells and to induce their lysis were identified and were genetically modified to improve their viro-oncolytic properties. More recently, a new appro...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-05-1076

    authors: Gillet L,Dewals B,Farnir F,de Leval L,Vanderplasschen A

    更新日期:2005-10-15 00:00:00

  • Inhibition of breast cancer cell growth by combined treatment with vitamin D3 analogues and tamoxifen.

    abstract::The steroid hormone 1,25-dihydroxyvitamin D3 [1,25-(OH)2D3] has potential to be used as an antitumor agent, but its clinical application is restricted by the strong calcemic activity. Therefore, new vitamin D3 analogues are developed with increased growth inhibitory and reduced calcemic activity. In the present study,...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Vink-van Wijngaarden T,Pols HA,Buurman CJ,van den Bemd GJ,Dorssers LC,Birkenhäger JC,van Leeuwen JP

    更新日期:1994-11-01 00:00:00

  • Development and characterization of established cell lines from primary and metastatic regions of human endometrial adenocarcinoma.

    abstract::Cell lines designated SNG-P and SNG-M were established from operation specimens of primary and metastatic regions of human endometrial adenocarcinoma. The cell lines grew well without interruption for over 13 months and were subcultivated more than 65 times. They continue to exhibit stable growth. The cultured cells a...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Ishiwata I,Nozawa S,Inoue T,Okumura H

    更新日期:1977-06-01 00:00:00

  • Rapamycin causes poorly reversible inhibition of mTOR and induces p53-independent apoptosis in human rhabdomyosarcoma cells.

    abstract::The mammalian target of rapamycin (mTOR) has been shown to link growth factor signaling and posttranscriptional control of translation of proteins that are frequently involved in cell cycle progression. However, the role of this pathway in cell survival has not been demonstrated. Here, we report that rapamycin, a spec...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Hosoi H,Dilling MB,Shikata T,Liu LN,Shu L,Ashmun RA,Germain GS,Abraham RT,Houghton PJ

    更新日期:1999-02-15 00:00:00

  • Mass Spectrometry Imaging Enables Discrimination of Renal Oncocytoma from Renal Cell Cancer Subtypes and Normal Kidney Tissues.

    abstract::Precise diagnosis and subtyping of kidney tumors are imperative to optimize and personalize treatment decision for patients. Patients with the most common benign renal tumor, renal oncocytomas, may be overtreated with surgical resection because of limited preoperative diagnostic methods that can accurately identify th...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:10.1158/0008-5472.CAN-19-2522

    authors: Zhang J,Li SQ,Lin JQ,Yu W,Eberlin LS

    更新日期:2020-02-15 00:00:00

  • Methotrexate accumulates to similar levels in animals transplanted with normal versus drug-resistant transgenic marrow.

    abstract::Gene transfer and expression of methotrexate (MTX)-resistant variants of dihydrofolate reductase (DHFR) in normal hematopoietic cells is a potential strategy to permit administration of larger doses of MTX by alleviating drug toxicity in normal cells and tissues that are drug sensitive. We have previously demonstrated...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Belur LR,Boelk-Galvan D,Diers MD,McIvor RS,Zimmerman CL

    更新日期:2001-02-15 00:00:00

  • Vascular endothelial growth factor-B and vascular endothelial growth factor-C expression in renal cell carcinomas: regulation by the von Hippel-Lindau gene and hypoxia.

    abstract::Angiogenesis is essential for tumor growth and metastasis. It is regulated by numerous angiogenic factors, one of the most important being vascular endothelial growth factor (VEGF). Recently VEGF-B and VEGF-C, two new VEGF family members, have been identified that bind to the tyrosine kinase receptors flt-1 (VEGFR1), ...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Gunningham SP,Currie MJ,Han C,Turner K,Scott PA,Robinson BA,Harris AL,Fox SB

    更新日期:2001-04-01 00:00:00

  • Overexpression of p21waf1 leads to increased inhibition of E2F-1 phosphorylation and sensitivity to anticancer drugs in retinoblastoma-negative human sarcoma cells.

    abstract::The effect of overexpression of p21waf1 on drug sensitivity was studied in an osteosarcoma cell line (SaOs-2) lacking both p53 and functional retinoblastoma protein using a tetracycline (TC)-inducible expression system. p21waf1 expression was barely detectable in SaOS-2 cells incubated in the presence of TC. After TC ...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Li WW,Fan J,Hochhauser D,Bertino JR

    更新日期:1997-06-01 00:00:00

  • Effect of concentration of D,L-2-difluoromethylornithine on murine mammary carcinogenesis.

    abstract::The appearance of chemically induced mammary gland carcinomas in virgin female Sprague-Dawley rats was blocked by the administration of D,L-2-difluoromethylornithine (DFMO) in drinking water during the stage of tumor promotion. Rats were given injections s.c. at 50 days of age with either 35 mg of 1-methyl-1-nitrosour...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Thompson HJ,Meeker LD,Herbst EJ,Ronan AM,Minocha R

    更新日期:1985-03-01 00:00:00

  • The alternative reading frame tumor suppressor inhibits growth through p21-dependent and p21-independent pathways.

    abstract::The alternative reading frame (ARF) tumor suppressor mediates growth arrest or apoptosis through activation of the p53 tumor suppressor. A prevailing concept is that ARF uses p21Cip1/Waf1, a p53-responsive gene and cyclin-dependent kinase (Cdk) inhibitor, to block cell cycle progression. Using p21 nullizygous cells, w...

    journal_title:Cancer research

    pub_type: 杂志文章

    doi:

    authors: Modestou M,Puig-Antich V,Korgaonkar C,Eapen A,Quelle DE

    更新日期:2001-04-01 00:00:00