Mapping the gene expression universe.

Abstract:

:Methods to globally survey gene expression provide valuable insights into gene function during development. In particular, comprehensive in situ hybridization studies have demonstrated that gene expression patterns are extraordinarily diverse and new imaging techniques have been introduced to capture these patterns with higher resolution at the tissue, cellular, and subcellular levels. The analysis of massive image databases can be greatly facilitated by computer vision techniques once annotated image sets reach the crucial mass sufficient to train the computer in pattern recognition. Ultimately, genome-wide atlases of gene expression during development will record gene activity in living animals with at least cellular resolution and in the context of morphogenetic events. These emerging datasets will lead to great advances in the field of comparative genomics and revolutionize our ability to decipher and model developmental processes for a variety of organisms.

journal_name

Curr Opin Genet Dev

authors

Lécuyer E,Tomancak P

doi

10.1016/j.gde.2008.08.003

subject

Has Abstract

pub_date

2008-12-01 00:00:00

pages

506-12

issue

6

eissn

0959-437X

issn

1879-0380

pii

S0959-437X(08)00100-7

journal_volume

18

pub_type

杂志文章,评审
  • The evolving role of cancer cell line-based screens to define the impact of cancer genomes on drug response.

    abstract::Over the last decade we have witnessed the convergence of two powerful experimental designs toward a common goal of defining the molecular subtypes that underpin the likelihood of a cancer patient responding to treatment in the clinic. The first of these 'experiments' has been the systematic sequencing of large number...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.12.002

    authors: Garnett MJ,McDermott U

    更新日期:2014-02-01 00:00:00

  • Cellular abnormalities of blood vessels as targets in cancer.

    abstract::Tumor blood vessels have multiple structural and functional abnormalities. They are unusually dynamic, and naturally undergo sprouting, proliferation, remodeling or regression. The vessels are irregularly shaped, tortuous, and lack the normal hierarchical arrangement of arterioles, capillaries and venules. Endothelial...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2004.12.005

    authors: Baluk P,Hashizume H,McDonald DM

    更新日期:2005-02-01 00:00:00

  • Clinical utility of telomere length measurements in cancer.

    abstract::Cancer remains one of the leading causes of death in the developed world and despite impressive advances in therapeutic modalities, only a small subset of patients are currently cured. The underlying genetic heterogeneity of cancers clearly plays a crucial role in determining both the clinical course of individual pat...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.02.012

    authors: Pepper C,Norris K,Fegan C

    更新日期:2020-02-01 00:00:00

  • How genetic modifiers influence the phenotype of spinal muscular atrophy and suggest future therapeutic approaches.

    abstract::Both complex disorders and monogenetic diseases are often modulated in their phenotype by further genetic, epigenetic or extrinsic factors. This gives rise to extensive phenotypic variability and potentially protection from disease manifestations, known as incomplete penetrance. Approaches including whole transcriptom...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.03.003

    authors: Wirth B,Garbes L,Riessland M

    更新日期:2013-06-01 00:00:00

  • Irreparable telomeric DNA damage and persistent DDR signalling as a shared causative mechanism of cellular senescence and ageing.

    abstract::The DNA damage response (DDR) orchestrates DNA repair and halts cell cycle. If damage is not resolved, cells can enter into an irreversible state of proliferative arrest called cellular senescence. Organismal ageing in mammals is associated with accumulation of markers of cellular senescence and DDR persistence at tel...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2014.06.009

    authors: Rossiello F,Herbig U,Longhese MP,Fumagalli M,d'Adda di Fagagna F

    更新日期:2014-06-01 00:00:00

  • Pattern formation in the vertebrate nervous system.

    abstract::In recent years, the classical approaches of experimental embryology have been used in combination with more modern techniques to investigate aspects of neurogenesis. This combination has advanced our knowledge of several areas of neuronal development, including the lineages of neuronal precursors, the segmentation of...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80073-5

    authors: Fraser SE

    更新日期:1991-08-01 00:00:00

  • Morphogenesis on the move: cell-to-cell trafficking of plant regulatory proteins.

    abstract::It has been shown recently that some plant transcription factors that regulate cell fate during development can traffic through plasmodesmata-the intercellular channels that connect plant cells. This phenomenon helps explain the non-autonomous effects of many developmental mutations in plants and defines a novel mecha...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(97)80076-7

    authors: Jackson D,Hake S

    更新日期:1997-08-01 00:00:00

  • RNA-binding proteins as regulators of gene expression.

    abstract::A plethora of post-transcriptional mechanisms are involved in essential steps in the pathway of genetic information expression in eukaryotes. These processes are specified by cis-acting signals on RNAs and are mediated by specific trans-acting factors, including RNA-binding proteins and small complementary RNAs. Recen...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(97)80148-7

    authors: Siomi H,Dreyfuss G

    更新日期:1997-06-01 00:00:00

  • Evolutionary anomalies among the aminoacyl-tRNA synthetases.

    abstract::Unexpected relationships among the various aminoacyl-tRNA synthetases continue to be uncovered. The question arises - is this mainly the result of promiscuous exchange, or is the confusion really a reflection of the differential loss of past duplications? Phylogenetic analysis may yet provide the answer. ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(98)80030-0

    authors: Doolittle RF,Handy J

    更新日期:1998-12-01 00:00:00

  • Genes that drive invasion and migration in Drosophila.

    abstract::Successful cell migration depends on the careful regulation of the timing of movement, the guidance of motile cells, and cytoskeletal and adhesive changes within the cells. This review focuses on genes that act cell-autonomously to promote these aspects of cell migration in Drosophila. We discuss recent advances in un...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2003.12.001

    authors: Starz-Gaiano M,Montell DJ

    更新日期:2004-02-01 00:00:00

  • Common predisposition alleles for moderately common cancers: bladder cancer.

    abstract::Bladder cancer is the 5th commonest cancer and two major risk factors are smoking and occupational chemical exposure. There is also evidence of a genetic component to its aetiology. Candidate gene studies have mostly focused on genes involved in adduct metabolism and DNA repair, including a recent consortium-based met...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2010.01.002

    authors: Kiltie AE

    更新日期:2010-06-01 00:00:00

  • The genetics of hereditary common cancers.

    abstract::Subsets of patients with common cancers belong to families in which the predisposition is inherited in a regular Mendelian fashion. Genes underlying these cancers are now recognized in colorectal cancer (APC, mismatch repair genes, LKB1) and in breast cancer (BRCA1, BRCA2) whereas, in prostate cancer, a locus in chrom...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(98)80085-3

    authors: de la Chapelle A,Peltomäki P

    更新日期:1998-06-01 00:00:00

  • The enigma of excessively long telomeres in cancer: lessons learned from rare human POT1 variants.

    abstract::The discovery that rare POT1 variants are associated with extremely long telomeres and increased cancer predisposition has provided a framework to revisit the relationship between telomere length and cancer development. Telomere shortening is linked with increased risk for cancer. However, over the past decade, there ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.02.002

    authors: Gong Y,Stock AJ,Liu Y

    更新日期:2020-02-01 00:00:00

  • Muscular dystrophies: alterations in a limited number of cellular pathways?

    abstract::Identification of new genes involved in muscle disorders has dramatically changed the traditional clinical classification of the large and heterogeneous group of the muscular dystrophies. Results obtained in recent years by positional candidate cloning have demonstrated the role of the sarcolemma and of the nuclear en...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(99)80041-0

    authors: Toniolo D,Minetti C

    更新日期:1999-06-01 00:00:00

  • Coordinate signaling by integrins and receptor tyrosine kinases in the regulation of G1 phase cell-cycle progression.

    abstract::Cell proliferation is dependent upon the activation of receptor tyrosine kinases and integrins by soluble growth factors and extracellular matrix proteins, respectively. It is now apparent that concerted, rather than individual, signaling by these receptors is the critical feature responsible for cell-cycle progressio...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(00)00155-6

    authors: Assoian RK,Schwartz MA

    更新日期:2001-02-01 00:00:00

  • Population genetics of microbial organisms.

    abstract::Population data suggest that many parasitic protozoa (e.g. Trypanosoma, Leishmania, Entamoeba and Giardia) reproduce clonally, but this hypothesis has been highly controversial for Plasmodium falciparum. Although reproduction is predominantly clonal in the enteric bacteria Escherichia coli and Salmonella, the level of...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80119-4

    authors: Hartl DL

    更新日期:1992-12-01 00:00:00

  • The reprogramming language of pluripotency.

    abstract::In metazoans, lineage-specific transcription factors and epigenetic modifiers function to establish and maintain proper gene expression programs during development. Recent landmark studies in both mouse and human have defined a set of transcription factors whose ectopic expression by retroviral transduction is capable...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2008.01.013

    authors: Welstead GG,Schorderet P,Boyer LA

    更新日期:2008-04-01 00:00:00

  • Advances in colon cancer research: in vitro and animal models.

    abstract::Modelling human colon cancer has long been the ambition of researchers and oncologists with the aim to better replicate disease progression and treatment response. Advances in our understanding of genetics, stem cell biology, tumour microenvironment and immunology have prepared the groundwork for recent major advances...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.12.003

    authors: Lannagan TR,Jackstadt R,Leedham SJ,Sansom OJ

    更新日期:2021-01-07 00:00:00

  • Gene regulation and differentiation in vertebrate ocular tissues.

    abstract::Molecular biological techniques have contributed greatly to the study of vertebrate ocular tissues. The specification of ocular tissues has been shown to be closely related to the expression of transcription factors encoded by genes such as Pax6 and microphthalmia. Lens-specific expression of the delta 1-crystallin ge...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(94)90137-r

    authors: Kodama R,Eguchi G

    更新日期:1994-10-01 00:00:00

  • RNA toxicity and foci formation in microsatellite expansion diseases.

    abstract::More than 30 incurable neurological and neuromuscular diseases are caused by simple microsatellite expansions consisted of 3-6 nucleotides. These repeats can occur in non-coding regions and often result in a dominantly inherited disease phenotype that is characteristic of a toxic RNA gain-of-function. The expanded RNA...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2017.01.005

    authors: Zhang N,Ashizawa T

    更新日期:2017-06-01 00:00:00

  • The role of yeast artificial chromosome clones in generating genome maps.

    abstract::The cloning of large DNAs as yeast artificial chromosomes (YACs) holds the promise of greatly expanding the scope of physical genomic mapping. Recent improvements in YAC clone libraries and their screening, as well as in the analysis of YAC-cloned DNA, are beginning to fulfill the potential of this system. ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(91)80044-m

    authors: Burke DT

    更新日期:1991-06-01 00:00:00

  • Hox gene evolution in nematodes: novelty conserved.

    abstract::The conserved homeobox (Hox) gene cluster is neither conserved nor clustered in the nematode Caenorhabditis elegans. Instead, C. elegans has a reduced and dispersed gene complement that is the result the loss of Hox genes in stages throughout its evolutionary history. The roles of Hox genes in patterning the nematode ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2003.10.009

    authors: Aboobaker A,Blaxter M

    更新日期:2003-12-01 00:00:00

  • Fibrillln mutations in Marfan syndrome and related phenotypes.

    abstract::A casual association has been established between mutations in the fibrillin 1 gene and Marfan syndrome and related phenotypes. Analysis of mutations in these disease types has provided new insights into microfibril assembly and function. These include evidence for a mutation in a fibrillin 1 domain associated with se...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(96)80007-4

    authors: Ramirez F

    更新日期:1996-06-01 00:00:00

  • Chromatin organization: form to function.

    abstract::Recent developments in technology have made it possible to create high resolution genome-wide maps of histone marks, DNA binding proteins and physical interactions along genomic regions. Chromatin features are found together in different combinations, dividing the genome up into domains with distinct functional proper...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2012.11.011

    authors: de Graaf CA,van Steensel B

    更新日期:2013-04-01 00:00:00

  • Deciphering mechanisms of response and resistance in large-scale mouse cancer screens.

    abstract::Acquired resistance is a major limitation for the successful treatment of cancer patients. Although numerous efficacious cancer therapeutics have been developed in the past decades, resistance arises due to a variety of reasons including tumoral genetic alterations, or modulation of factors in the tumor environment. U...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2019.02.006

    authors: Prahallad A,Jensen MR,Chapeau EA

    更新日期:2019-02-01 00:00:00

  • mRNA translation: influence of the 5' and 3' untranslated regions.

    abstract::Eukaryotic messenger RNA utilization is a tightly controlled process. Control of translation is exerted at several levels, but the predominant step is ribosome binding, which is rate limiting for translation of most mRNAs. There appear to be several alternative modes by which ribosomes bind to the mRNA and initiate tr...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80059-0

    authors: Sonenberg N

    更新日期:1994-04-01 00:00:00

  • Regeneration and reprogramming.

    abstract::Recent reprogramming studies indicate that mammalian, somatic cells have the potential to achieve pluripotent states and undergo cell type switching. Such cellular traits are observed under natural conditions in animals that regenerate complex organs. A number of invertebrates display the amazing trait of whole body r...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2012.09.006

    authors: Knapp D,Tanaka EM

    更新日期:2012-10-01 00:00:00

  • AngiomiRs--key regulators of angiogenesis.

    abstract::The formation of new blood vessels through the process of angiogenesis is critical in vascular development and homeostasis. Aberrant angiogenesis leads to a variety of diseases, such as ischemia and cancer. Recent studies have revealed important roles for miRNAs in regulating endothelial cell (EC) function, especially...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2009.04.002

    authors: Wang S,Olson EN

    更新日期:2009-06-01 00:00:00

  • Only scratching the cell surface: extracellular signals in cerebrum development.

    abstract::Numerous roles have been identified for extracellular signals such as Fibroblast Growth Factors (FGFs), Transforming Growth Factor-βs (TGFβs), Wingless-Int proteins (WNTs), and Sonic Hedgehog (SHH) in assigning fates to cells during development of the cerebrum. However, several fundamental questions remain largely une...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.04.004

    authors: Hébert JM

    更新日期:2013-08-01 00:00:00

  • Chromatin assembly: biochemical identities and genetic redundancy.

    abstract::Investigations on chromatin assembly in vitro implicate chromatin assembly factor 1 (CAF1) as a chaperone for histones H3/H4 and nucleosome assembly protein 1 (NAP1) as a chaperone for histones H2A/H2B. Deletion analysis of CAF1 in vivo suggests multiple redundant pathways for deposition of the histones. Histone depos...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/S0959-437X(99)80028-8

    authors: Adams CR,Kamakaka RT

    更新日期:1999-04-01 00:00:00