Light-induced charge separation in Rhodopseudomonas viridis reaction centers monitored by Fourier-transform infrared difference spectroscopy: the quinone vibrations.

Abstract:

:Static FTIR light-induced difference spectra have been recorded for reaction centers from Rhodopseudomonas viridis in the following charge-separated states: P+QA(-)-PQA, P+QB(-)-PQB, I(-)-I, I-QA(-)-IQA, and I-QA(2-)-IQA. A comparison of the I(-)-I difference spectra with the I-QA(-)-IQA difference spectra reveals new bands which can be assigned to QA- vibrations; these vibrations are also observed in the P+QA(-)-PQA and P+QB(-)-PQB difference spectra. Through an analysis of all of the static difference spectra, the electron-transfer pathway can be monitored in the infrared from the primary donor, P, to the secondary acceptor, QB, via the intermediate acceptor, I, and the primary acceptor, QA. The difference spectra are dominated by absorbance changes of prosthetic groups, with very few identifiable contributions from amino acids and little overall structural change in the protein backbone, involving only one or two residues for the various charge-separated states. Oxidation of the primary donor in the reaction center shows the characteristic absorbance changes of the 9-keto and 10-ester carbonyl groups observed upon oxidation of bacteriochlorophyll b in a non-hydrogen-bonded environment [Ballschmiter, K. H., & Katz, J. J. (1969) J. Am. Chem. Soc. 91, 2661-2677]. Reduction of the quinones in the reaction center yields absorbance changes of the carbonyls observed during reduction of quinones in a hydrogen-bonded environment [Bauscher, M., Nabedryk, E., Bagley, K., Breton, J., & Mäntele, W. (1990) FEBS Lett. 261, 191-195].(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Buchanan S,Michel H,Gerwert K

doi

10.1021/bi00120a006

subject

Has Abstract

pub_date

1992-02-11 00:00:00

pages

1314-22

issue

5

eissn

0006-2960

issn

1520-4995

journal_volume

31

pub_type

杂志文章
  • LNA (locked nucleic acid): high-affinity targeting of complementary RNA and DNA.

    abstract::Locked nucleic acid (LNA) is a nucleic acid analogue containing one or more LNA nucleotide monomers with a bicyclic furanose unit locked in an RNA mimicking sugar conformation. LNA oligonucleotides display unprecedented hybridization affinity toward complementary single-stranded RNA and complementary single- or double...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi0485732

    authors: Vester B,Wengel J

    更新日期:2004-10-26 00:00:00

  • Differential interfacial and substrate binding modes of mammalian pancreatic phospholipases A2: a comparison among human, bovine, and porcine enzymes.

    abstract::To identify the residues essential for interfacial binding and substrate binding of human pancreatic phospholipase A2 (hpPLA2), several ionic residues in the putative interfacial binding surface (R6E, K7E, K10E, and K116E) and substrate binding site (D53K and K56E) were mutated. Interfacial affinity of these mutants w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990600e

    authors: Snitko Y,Han SK,Lee BI,Cho W

    更新日期:1999-06-15 00:00:00

  • Kinetic analyses of mutations in the glycine-rich loop of cAMP-dependent protein kinase.

    abstract::The conserved glycines in the glycine-rich loop (Leu-Gly50-Thr-Gly52-Ser-Phe-Gly55-Arg-Val) of the catalytic (C) subunit of cAMP-dependent protein kinase were each mutated to Ser (G50S, G52S, and G55S). The effects of these mutations were assessed here using both steady-state and pre-steady-state kinetic methods. Whil...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972987w

    authors: Grant BD,Hemmer W,Tsigelny I,Adams JA,Taylor SS

    更新日期:1998-05-26 00:00:00

  • Structure of mammalian cytochrome P450 2C5 complexed with diclofenac at 2.1 A resolution: evidence for an induced fit model of substrate binding.

    abstract::The structure of the anti-inflammatory drug diclofenac bound in the active site of rabbit microsomal cytochrome P450 2C5/3LVdH was determined by X-ray crystallography to 2.1 A resolution. P450 2C5/3LVdH and the related enzyme 2C5dH catalyze the 4'-hydroxylation of diclofenac with apparent K(m) values of 80 and 57 micr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034556l

    authors: Wester MR,Johnson EF,Marques-Soares C,Dijols S,Dansette PM,Mansuy D,Stout CD

    更新日期:2003-08-12 00:00:00

  • Conformation and reactivity changes induced by N-methylkirromycin (aurodox) in elongation factor Tu.

    abstract::Kirromycin and related antibiotics inhibit protein synthesis in bacteria by acting on elongation factor Tu (EF-Tu). We have studied the effects of N-methylkirromycin (aurodox) on some molecular properties of this protein. The binding of the antibiotic causes a dramatic variation in the protein fluorescence emission sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00443a046

    authors: Balestrieri C,Giovane A,Quagliuolo L,Servillo L,Chinali G

    更新日期:1989-08-22 00:00:00

  • Direct Interaction between the β-Amyloid Core and Tau Facilitates Cross-Seeding: A Novel Target for Therapeutic Intervention.

    abstract::The deposition of amyloid-β (Aβ) plaques and tau-based neurofibrillary tangles is a neuropathological feature of Alzheimer's disease (AD). While studies have shown that the Aβ and tau interaction results in elevated AD pathology, the molecular linkage and mechanism of interaction of Aβ and tau are unclear. A recent st...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b01087

    authors: Tripathi T,Khan H

    更新日期:2020-02-04 00:00:00

  • Effect of phosphorylation on hydrogen-bonding interactions of the active site histidine of the phosphocarrier protein HPr of the phosphoenolpyruvate-dependent phosphotransferase system determined by 15N NMR spectroscopy.

    abstract::The phosphocarrier protein HPr of the phosphoenolpyruvate-dependent sugar transport system of Escherichia coli can exist in a phosphorylated and a nonphosphorylated form. During phosphorylation, the phosphoryl group is carried on a histidine residue, His15. The hydrogen-bonding state of this histidine was examined wit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00487a026

    authors: van Dijk AA,de Lange LC,Bachovchin WW,Robillard GT

    更新日期:1990-09-04 00:00:00

  • How fumarase recycles after the malate --> fumarate reaction. Insights into the reaction mechanism.

    abstract::Recycling of yeast fumarase to permit repetition of its reaction chemistry requires two proton transfers and two conformational changes, in pathways that are different in detail but thematically similar in the two directions. In the malate --> fumarate direction, simple anions such as acetate accelerate the fumarate-o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9821521

    authors: Rose IA

    更新日期:1998-12-22 00:00:00

  • Molecular determinants of amyloid deposition in Alzheimer's disease: conformational studies of synthetic beta-protein fragments.

    abstract::The amyloid beta-protein (1-42) is a major constituent of the abnormal extracellular amyloid plaque that characterizes the brains of victims of Alzheimer's disease. Two peptides, with sequences derived from the previously unexplored C-terminal region of the beta-protein, beta 26-33 (H2N-SNKGAIIG-CO2H) and beta 34-42 (...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00463a003

    authors: Halverson K,Fraser PE,Kirschner DA,Lansbury PT Jr

    更新日期:1990-03-20 00:00:00

  • Differential scanning calorimetry study of the thermodynamic stability of some mutants of Sso7d from Sulfolobus solfataricus.

    abstract::Sso7d from the thermoacidophilic archaebacterium Sulfolobus solfataricus is a small globular protein with a known three-dimensional structure. Inspection of the structure reveals that Phe31 is a member of the aromatic cluster forming the protein hydrophobic core, whereas Trp23 is located on the protein surface and its...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972994k

    authors: Catanzano F,Graziano G,Fusi P,Tortora P,Barone G

    更新日期:1998-07-21 00:00:00

  • An RNA polymerase mutant with reduced accuracy of chain elongation.

    abstract::A new Escherichia coli RNA polymerase mutant was isolated which exhibited reduced accuracy of chain elongation in vivo and in vitro. The novel isolation procedure consisted of simultaneous selection for rifampicin resistance and screening for increased leakiness of an early, strongly polar nonsense mutation of lacZ, o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00368a013

    authors: Blank A,Gallant JA,Burgess RR,Loeb LA

    更新日期:1986-10-07 00:00:00

  • Zinc site redesign in T4 gene 32 protein: structure and stability of cobalt(II) complexes formed by wild-type and metal ligand substitution mutants.

    abstract::Phage T4 gene 32 protein (gp32) is a zinc metalloprotein which binds cooperatively and preferentially to single-stranded nucleic acids and functions as a replication and recombination accessory protein. Zn(II) coordination by gp32 employs a His-Cys3 metal ligand donor set derived from the His64-X12-Cys77-X9-Cys87-X2-C...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9617769

    authors: Guo J,Giedroc DP

    更新日期:1997-01-28 00:00:00

  • Vibrationally enhanced hydrogen tunneling in the Escherichia coli thymidylate synthase catalyzed reaction.

    abstract::The enzyme thymidylate synthase (TS) catalyzes a complex reaction that involves forming and breaking at least six covalent bonds. The physical nature of the hydride transfer step in this complex reaction cascade has been studied by means of isotope effects and their temperature dependence. Competitive kinetic isotope ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036124g

    authors: Agrawal N,Hong B,Mihai C,Kohen A

    更新日期:2004-02-24 00:00:00

  • Activation-induced subcellular redistribution of G alpha(s) is dependent upon its unique N-terminus.

    abstract::The heterotrimeric G protein subunit, alpha(s), can move reversibly from plasma membranes to cytoplasm in response to activation by GPCRs or activating mutations. We examined the importance of the unique N-terminus of alpha(s) in this translocation in cultured cells. alpha(s) contains a single site for palmitoylation ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025533u

    authors: Thiyagarajan MM,Bigras E,Van Tol HH,Hébert TE,Evanko DS,Wedegaertner PB

    更新日期:2002-07-30 00:00:00

  • hnRNP A2 selectively binds the cytoplasmic transport sequence of myelin basic protein mRNA.

    abstract::Segregation of mRNAs in the cytoplasm of polar cells has been demonstrated for proteins involved in Xenopus and Drosophila oogenesis, and for some proteins in somatic cells. It is assumed that vectorial transport of the messages is generally responsible for this localization. The mRNA encoding the basic protein of cen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9800247

    authors: Hoek KS,Kidd GJ,Carson JH,Smith R

    更新日期:1998-05-12 00:00:00

  • Cysteine biosynthetic enzymes are the pieces of a metabolic energy pump.

    abstract::Understanding the mechanisms of free energy transfer in metabolism is fundamental to understanding how the chemical forces that sustain the molecular organization of the cell are distributed. Recent studies of molecular motors (1-3) and ATP-driven proton transport (4-6) describe how chemical potential is transferred a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025953j

    authors: Wei J,Tang QX,Varlamova O,Roche C,Lee R,Leyh TS

    更新日期:2002-07-02 00:00:00

  • Effects of the Iowa and Milano mutations on apolipoprotein A-I structure and dynamics determined by hydrogen exchange and mass spectrometry.

    abstract::The Iowa point mutation in apolipoprotein A-I (G26R) leads to a systemic amyloidosis condition, and the Milano mutation (R173C) is associated with hypoalphalipoproteinemia, a reduced plasma level of high-density lipoprotein. To probe the structural effects that lead to these outcomes, we used amide hydrogen-deuterium ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300926j

    authors: Chetty PS,Ohshiro M,Saito H,Dhanasekaran P,Lund-Katz S,Mayne L,Englander W,Phillips MC

    更新日期:2012-11-06 00:00:00

  • Proton NMR and structural features of a 24-nucleotide RNA hairpin.

    abstract::The three-dimensional conformation of a 24-nucleotide variant of the RNA binding sequence for the coat protein of bacteriophage R17 has been analyzed using NMR, molecular dynamics, and energy minimization. The imino proton spectrum is consistent with base pairing requirements for coat protein binding known from bioche...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00019a030

    authors: Borer PN,Lin Y,Wang S,Roggenbuck MW,Gott JM,Uhlenbeck OC,Pelczer I

    更新日期:1995-05-16 00:00:00

  • Clonal analysis of the glycosylation of immunoglobulin G secreted by murine hybridomas.

    abstract::A panel of 10 hybridomas was assembled to assess the influence of various genetic and biological factors upon glycosylation of secreted monoclonal IgG. After exhaustive Pronase digestion of IgG, glycopeptides were characterized chromatographically by apparent size, charge, and concanavalin A (Con A)-Sepharose and Lens...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00429a065

    authors: Rothman RJ,Warren L,Vliegenthart JF,Härd KJ

    更新日期:1989-02-07 00:00:00

  • Structural and functional properties of human hemoglobins reassembled after synthesis in Escherichia coli.

    abstract::Human hemoglobin produced in the Escherichia coli coexpression system of Hernan et al. [(1992) Biochemistry 31, 8619-8628] has been transformed into a functionally homogeneous protein whose properties closely approximate those of normal hemoglobin A. Both of the alpha and beta chains of this hemoglobin contain a valin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981986g

    authors: Hui HL,Kavanaugh JS,Doyle ML,Wierzba A,Rogers PH,Arnone A,Holt JM,Ackers GK,Noble RW

    更新日期:1999-01-19 00:00:00

  • Stopped-flow analysis on anion binding to blue-form halorhodopsin from Natronobacterium pharaonis: comparison with the anion-uptake process during the photocycle.

    abstract::Pharaonis halorhodopsin (phR), the light-driven chloride ion pump from Natronobacterium pharaonis with C-terminal histidine tag, was expressed in Escherichia coli cells. The protein was solubilized with 0.1% n-dodecyl beta-D-maltopyranoside and purified with a nickel column. Removal of Cl- from the medium yields blue ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011788g

    authors: Sato M,Kanamori T,Kamo N,Demura M,Nitta K

    更新日期:2002-02-19 00:00:00

  • Noncompetitive Allosteric Antagonism of Death Receptor 5 by a Synthetic Affibody Ligand.

    abstract::Fatty acid-induced upregulation of death receptor 5 (DR5) and its cognate ligand, tumor necrosis factor-related apoptosis-inducing ligand (TRAIL), promotes hepatocyte lipoapoptosis, which is a key mechanism in the progression of fatty liver disease. Accordingly, inhibition of DR5 signaling represents an attractive str...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00529

    authors: Vunnam N,Szymonski S,Hirsova P,Gores GJ,Sachs JN,Hackel BJ

    更新日期:2020-10-13 00:00:00

  • Time-dependent inhibition of Bacillus stearothermophilus alanine racemase by (1-aminoethyl)phosphonate isomers by isomerization to noncovalent slowly dissociating enzyme-(1-aminoethyl)phosphonate complexes.

    abstract::An alanine racemase encoded by a gene from the thermophilic Gram-positive bacterium Bacillus stearothermophilus is overproduced to 0.3% of the soluble protein when carried on plasmid pICR4 in Escherichia coli [Inagaki, K., Tanizawa, K., Badet, B., Walsh, C. T., Tanaka, H., & Soda, K. (1986) Biochemistry (third paper o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00359a029

    authors: Badet B,Inagaki K,Soda K,Walsh CT

    更新日期:1986-06-03 00:00:00

  • Phospholipase A2 engineering. Structural and functional roles of the highly conserved active site residue aspartate-49.

    abstract::Site-directed mutagenesis and high-resolution two-dimensional (2D) proton nuclear magnetic resonance (NMR) were used to probe the structural and functional roles of a highly conserved residue, Asp-49, in the interfacial catalysis by bovine pancreatic phospholipase A2 (PLA2, overexpressed in Escherichia coli). Accordin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00253a009

    authors: Li Y,Yu BZ,Zhu H,Jain MK,Tsai MD

    更新日期:1994-12-13 00:00:00

  • Misfolding of the cystic fibrosis transmembrane conductance regulator and disease.

    abstract::Understanding the structural basis for defects in protein function that underlie protein-based genetic diseases is the fundamental requirement for development of therapies. This situation is epitomized by the cystic fibrosis transmembrane conductance regulator (CFTR)-the gene product known to be defective in CF patien...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi702209s

    authors: Cheung JC,Deber CM

    更新日期:2008-02-12 00:00:00

  • Interactions of pig liver methylenetetrahydrofolate reductase with methylenetetrahydropteroylpolyglutamate substrates and with dihydropteroylpolyglutamate inhibitors.

    abstract::Dihydrofolate and dihydropteroylpolyglutamates inhibit pig liver methylenetetrahydrofolate reductase. In all cases the inhibition is linearly competitive with respect to methylenetetrahydrofolate. The Ki values decrease with each additional glutamyl residue from one to six, from a value of 6.5 microM for dihydrofolate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00551a005

    authors: Matthews RG,Baugh CM

    更新日期:1980-05-13 00:00:00

  • Rapid deubiquitination of nucleosomal histones in human tumor cells caused by proteasome inhibitors and stress response inducers: effects on replication, transcription, translation, and the cellular stress response.

    abstract::The proteasome inhibitors, lactacystin and N-acetyl-leucyl-leucyl-norlucinal, caused a rapid and near-complete loss of approximately 22-23-kDa ubiquitinated nucleoproteins, which we have identified as monoubiquitinated nucleosomal histones H2A and H2B by immunological and two-dimensional electrophoretic techniques. In...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970998j

    authors: Mimnaugh EG,Chen HY,Davie JR,Celis JE,Neckers L

    更新日期:1997-11-25 00:00:00

  • Lipid binding by fragments of apolipoprotein C-III-1 obtained by thrombin cleavage.

    abstract::We have used thrombin to cleave apolipoprotein C-III-1 into two fragments constituting residues 1-40 (apoLP-C-III-A) and 41-79 (apoLP-C-III-B). The lipid binding properties of these fragments with dimyristoyl- and 1-palmitoyl-2-oleoylphosphatidylcholines have been determined using circular dichroic and intrinsic trypt...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00644a004

    authors: Sparrow JT,Pownall HJ,Hsu FJ,Blumenthal LD,Culwell AR,Gotto AM

    更新日期:1977-12-13 00:00:00

  • Probing histidine-substrate interactions in tyrosyl-tRNA synthetase using asparagine and glutamine replacements.

    abstract::We have analyzed the interactions of a histidine residue with a substrate using site-directed mutagenesis. Previous studies on tyrosyl-tRNA synthetase from Bacillus stearothermophilus have shown that a histidine residue (His-48) makes an interaction with ATP, which is improved on mutating Thr-51----Pro-51. We find on ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00340a022

    authors: Lowe DM,Fersht AR,Wilkinson AJ,Carter P,Winter G

    更新日期:1985-09-10 00:00:00

  • Temperature dependence of forward and reverse electron transfer from A1-, the reduced secondary electron acceptor in photosystem I.

    abstract::Electron-transfer reactions following the formation of P700(+)A1- have been studied in isolated Photosystem I complexes from Synechococcus elongatus between 300 and 5 K by flash absorption spectroscopy. (1) In the range from 300 to 200 K, A1- is reoxidized by electron transfer to the iron-sulfur cluster FX. The rate s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi973182r

    authors: Schlodder E,Falkenberg K,Gergeleit M,Brettel K

    更新日期:1998-06-30 00:00:00