Full-length genomic sequencing and analysis of four HIV type 1 subtype B isolates circulating in the territory of Russia.

Abstract:

:We describe four full-length genomic sequences of HIV-1 subtype B isolates from Russia. These full-length HIV-1 genomes were amplified by nested polymerase chain reaction and sequenced. The sequences obtained were subjected to neighbor-joining phylogenetic analysis using a Kimura two-parameter model and to detailed sequence analysis. Comparison of the sequences obtained with 68 near full-length HIV-1 subtype B sequences from different geographic regions of the world revealed that isolates from Russia did not cluster significantly with other subtype B genomes. Sequences AY819715 and AY751407 significantly formed one cluster, which indicates their close similarity. The HIV-1 genomes obtained from Russia did not form a distinct homogeneous group inside subtype B. Their genetic diversity probably reflects the result of multiple introduction events of different subtype B strains to Russia. Sequences AY819715 and AY751406 possess some features of viruses from long-term survivors, such as specific extensions of the Env V2 region.

authors

Galkin AN,Gagarina EY,Lukyanova NS,Danilova TV

doi

10.1089/aid.2006.22.1192

subject

Has Abstract

pub_date

2006-11-01 00:00:00

pages

1192-7

issue

11

eissn

0889-2229

issn

1931-8405

journal_volume

22

pub_type

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