A systematic study of the effect of physiological factors on beta2-microglobulin amyloid formation at neutral pH.

Abstract:

:Beta(2)-microglobulin (beta(2)m) forms amyloid fibrils that deposit in the musculo-skeletal system in patients undergoing long-term hemodialysis. How beta(2)m self-assembles in vivo is not understood, since the monomeric wild-type protein is incapable of forming fibrils in isolation in vitro at neutral pH, while elongation of fibril-seeds made from recombinant protein has only been achieved at low pH or at neutral pH in the presence of detergents or cosolvents. Here we describe a systematic study of the effect of 11 physiologically relevant factors on beta(2)m fibrillogenesis at pH 7.0 without denaturants. By comparing the results obtained for the wild-type protein with those of two variants (DeltaN6 and V37A), the role of protein stability in fibrillogenesis is explored. We show that DeltaN6 forms low yields of amyloid-like fibrils at pH 7.0 in the absence of seeds, suggesting that this species could initiate fibrillogenesis in vivo. By contrast, high yields of amyloid-like fibrils are observed for all proteins when assembly is seeded with fibril-seeds formed from recombinant protein at pH 2.5 stabilized by the addition of heparin, serum amyloid P component (SAP), apolipoprotein E (apoE), uremic serum, or synovial fluid. The results suggest that the conditions within the synovium facilitate fibrillogenesis of beta(2)m and show that different physiological factors may act synergistically to promote fibril formation. By comparing the behavior of wild-type beta(2)m with that of DeltaN6 and V37A, we show that the physiologically relevant factors enhance fibrillogenesis by stabilizing fibril-seeds, thereby allowing fibril extension by rare assembly competent species formed by local unfolding of native monomers.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Myers SL,Jones S,Jahn TR,Morten IJ,Tennent GA,Hewitt EW,Radford SE

doi

10.1021/bi052434i

subject

Has Abstract

pub_date

2006-02-21 00:00:00

pages

2311-21

issue

7

eissn

0006-2960

issn

1520-4995

journal_volume

45

pub_type

杂志文章
  • Expression, purification, and characterization of enzyme IIA(glc) of the phosphoenolpyruvate:sugar phosphotransferase system of Mycoplasma capricolum.

    abstract::The gene encoding enzyme IIA(glc) (EIIA) of the phosphoenolpyruvate:sugar phosphotransferase system of Mycoplasma capricolum was cloned into a regulated expression vector. The purified protein product of the overexpressed gene was characterized as an active phosphoacceptor from HPr with a higher pI than previously des...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi963090m

    authors: Zhu PP,Nosworthy N,Ginsburg A,Miyata M,Seok YJ,Peterkofsky A

    更新日期:1997-06-10 00:00:00

  • Surface salt bridges, double-mutant cycles, and protein stability: an experimental and computational analysis of the interaction of the Asp 23 side chain with the N-terminus of the N-terminal domain of the ribosomal protein l9.

    abstract::Experimental and theoretical double-mutant cycles have been used to investigate a salt bridge in the N-terminal domain of the protein L9. Aspartic acid 23 is the only acidic residue involved in a well-defined pairwise interaction, namely, a partially solvent-exposed salt bridge with the protonated N-terminus of the pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi027202n

    authors: Luisi DL,Snow CD,Lin JJ,Hendsch ZS,Tidor B,Raleigh DP

    更新日期:2003-06-17 00:00:00

  • Hydron transfer catalyzed by triosephosphate isomerase. Products of the direct and phosphite-activated isomerization of [1-(13)C]-glycolaldehyde in D(2)O.

    abstract::Product distributions for the reaction of glycolaldehyde labeled with carbon-13 at the carbonyl carbon ([1-(13)C]-GA) catalyzed by triosephosphate isomerase (TIM) in D(2)O at pD 7.0 in the presence of phosphite dianion and in its absence were determined by (1)H NMR spectroscopy. We observe three products for the relat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900636c

    authors: Go MK,Amyes TL,Richard JP

    更新日期:2009-06-23 00:00:00

  • FeNO structure in distal pocket mutants of myoglobin based on resonance Raman spectroscopy.

    abstract::FeNO vibrational frequencies were investigated for a series of myoglobin mutants using isotope-edited resonance Raman spectra of (15/14)NO adducts, which reveal the FeNO and NO stretching modes. The latter give rise to doublet bands, as a result of Fermi resonances with coincident porphyrin vibrations; these doublets ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026395b

    authors: Coyle CM,Vogel KM,Rush TS 3rd,Kozlowski PM,Williams R,Spiro TG,Dou Y,Ikeda-Saito M,Olson JS,Zgierski MZ

    更新日期:2003-05-06 00:00:00

  • Targeted cross-linking of a molten globule form of acetylcholinesterase by the virucidal agent hypericin.

    abstract::The natural product hypericin is a photosensitive polycyclic aromatic dione compound, which has been widely investigated because of its virucidal and antitumor properties. Although it has been suggested that singlet oxygen or a radical species might be responsible for its biological action, its mechanism of action rem...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991147+

    authors: Weiner L,Roth E,Mazur Y,Silman I

    更新日期:1999-08-31 00:00:00

  • pH dependence of folding of iso-2-cytochrome c.

    abstract::Starting from a standard unfolded state (3.0 M guanidine hydrochloride, pH 7.2), the kinetics of refolding of iso-2-cytochrome c have been investigated as a function of final pH between pH 3 and pH 10. Absorbance in the ultraviolet and visible spectral regions and tryptophan fluorescence are used to monitor folding. O...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00419a020

    authors: Nall BT,Osterhout JJ Jr,Ramdas L

    更新日期:1988-09-20 00:00:00

  • Membrane fusion and inverted phases.

    abstract::We have found a correlation between liposome fusion kinetics and lipid phase behavior for several inverted phase forming lipids. N-Methylated dioleoylphosphatidylethanolamine (DOPE-Me), or mixtures of dioleoylphosphatidylethanolamine (DOPE) and dioleoylphosphatidylcholine (DOPC), will form an inverted hexagonal phase ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00435a011

    authors: Ellens H,Siegel DP,Alford D,Yeagle PL,Boni L,Lis LJ,Quinn PJ,Bentz J

    更新日期:1989-05-02 00:00:00

  • Carbamate formation on tubulin: CO2/bicarbonate buffers protect tubulin from inactivation by reductive methylation and carbamoylation and promote microtubule assembly at alkaline pH.

    abstract::Carbamoylation and reductive methylation of tubulin have been shown previously to inhibit microtubule assembly, probably by attack on essential internal lysine residues [Mellado, W., Slebe, J., & Maccioni, R.B. (1982) Biochem. J. 203, 675-681; Szasz, J., Burns, R., & Sternlicht, H. (1982) J. Biol. Chem. 257, 3697-3704...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00403a027

    authors: Clark RW,Volpi M,Berlin RD

    更新日期:1988-02-09 00:00:00

  • Characterization of two glycolipid: alpha 2-3sialyltransferases, SAT-3 (CMP-NeuAc:nLcOse4Cer alpha 2-3sialyltransferase) and SAT-4 (CMP-NeuAc:GgOse4Cer alpha 2-3sialyltransferase), from human colon carcinoma (Colo 205) cell line.

    abstract::Sialyltransferase activities, SAT-3 (CMP-NeuAc:nLcOse4Cer alpha 2-3sialyltransferase) and SAT-4 (CMP-NeuAc:GgOse4Cer alpha 2-3sialyltransferase), in Colo 205 cells catalyze the transfer of sialic acid to the terminal galactose of GlcNc-- and GalNAc-containing glycolipid substrates, respectively. Competition kinetic st...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960239l

    authors: Basu SS,Basu M,Li Z,Basu S

    更新日期:1996-04-23 00:00:00

  • Calorimetric studies of the binding of ferric ions to human serum transferrin.

    abstract::The binding of ferric ions, chelated with nitrilotriacetate, to human serum transferrin (hTF) has been studied using ultrasensitive titration calorimetry. Studies were done in both the presence and the absence of the synergistic bicarbonate anion. It was found that the C-site of hTF is capable of weakly binding bicarb...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00087a019

    authors: Lin LN,Mason AB,Woodworth RC,Brandts JF

    更新日期:1993-09-14 00:00:00

  • Solution structure of the Dickerson DNA dodecamer containing a single ribonucleotide.

    abstract::Ribonucleotides are frequently incorporated into DNA during replication. They are recognized and processed by several cellular enzymes, and their continued presence in the yeast nuclear genome results in replicative stress and genome instability. Thus, it is important to understand the effects of isolated ribonucleoti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201710q

    authors: DeRose EF,Perera L,Murray MS,Kunkel TA,London RE

    更新日期:2012-03-27 00:00:00

  • Exploring the Evolutionary History of Kinetic Stability in the α-Lytic Protease Family.

    abstract::In addition to encoding the tertiary fold and stability, the primary sequence of a protein encodes the folding trajectory and kinetic barriers that determine the speed of folding. How these kinetic barriers are encoded is not well understood. Here, we use evolutionary sequence variation in the α-lytic protease (αLP) p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00720

    authors: Nixon CF,Lim SA,Sailer ZR,Zheludev IN,Gee CL,Kelch BA,Harms MJ,Marqusee S

    更新日期:2021-01-26 00:00:00

  • A protein dissection study of a molten globule.

    abstract::Proteins have many distinct tertiary folds (Richardson, J. S. (1981) Adv. Prot. Chem. 34, 167-339). The term tertiary fold refers to the spatial organization of secondary structure elements (alpha-helices and beta-strands). It is not known when, in the process of protein folding, a native tertiary fold emerges. Here, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00174a021

    authors: Peng ZY,Kim PS

    更新日期:1994-03-01 00:00:00

  • Abortive initiation and long ribonucleic acid synthesis.

    abstract::In vitro transcription assays have been used to study the rate of ribonucleic acid (RNA) synthesis from the Escherichia coli lactose promotor mutant lacL8UV5 contained on a 203-bp (base pair) restriction fragment. The half-life of long (63-base) RNA production from heparin-resistant RNA polymerase-promotor complexes w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00511a003

    authors: Munson LM,Reznikoff WS

    更新日期:1981-04-14 00:00:00

  • Pyridoxamine-pyruvate transaminase. 1. Determination of the active site stoichiometry and the pH dependence of the dissociation constant for 5'-deoxypyridoxal.

    abstract::Spectrophotometric titration of pyridoxamine-pyruvate transaminase (EC 2.6.1.30) with pyridoxal at pH 7.15 gives four equivalent binding sites per tetramer. The pH dependence of the equilibrium constant for the association of 5'-deoxypyridoxal with the active site lysine residue was determined spectrophotometrically. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00643a013

    authors: Gilmer PJ,McIntire WS,Kirsch JF

    更新日期:1977-11-29 00:00:00

  • Topographical localization of peroxisomal acyl-CoA ligases: differential localization of palmitoyl-CoA and lignoceroyl-CoA ligases.

    abstract::We found that peroxisomal lignoceroyl-CoA ligase, like palmitoyl-CoA ligase, is present in the peroxisomal membrane whereas the peroxisomal beta-oxidation enzyme system is localized in the matrix. To further define the role of peroxisomal acyl-CoA ligases (membrane component) in providing acyl-CoA for peroxisomal beta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00468a027

    authors: Lazo O,Contreras M,Singh I

    更新日期:1990-04-24 00:00:00

  • Sugar-induced molten-globule model.

    abstract::Proteins denature at low pH because of intramolecular electrostatic repulsions. The addition of salt partially overcomes this repulsion for some proteins, yielding a collapsed conformation called the A-state. A-states have characteristics expected for the molten globule, a notional kinetic protein folding intermediate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981364v

    authors: Davis-Searles PR,Morar AS,Saunders AJ,Erie DA,Pielak GJ

    更新日期:1998-12-01 00:00:00

  • Redox-dependent structural differences in putidaredoxin derived from homologous structure refinement via residual dipolar couplings.

    abstract::Structural differences in the [2Fe-2S] ferredoxin, putidaredoxin (Pdx), from the camphor hydroxylation pathway of Pseudomonas putida have been investigated as a function of oxidation state of the iron cluster. Pdx is involved in biological electron transfer to cytochrome P450(cam) (CYP101). Redox-dependent differences...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050152c

    authors: Jain NU,Tjioe E,Savidor A,Boulie J

    更新日期:2005-06-28 00:00:00

  • Nuclear magnetic resonance studies on transfer ribonucleic acid: assignment of AU tertiary resonances.

    abstract::The hydrogen-bonded ring NH nuclear magnetic resonance (NMR) spectra of several transfer ribonucleic acid (RNA) species have been examined with particular emphasis on the extreme low-field portion. Betwen --13.8 and --15 ppm there are two extra resonances which are not derived from cloverleaf base pairs. A combined ap...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00585a025

    authors: Hurd RE,Reid BR

    更新日期:1979-09-04 00:00:00

  • Crystal structures and iron release properties of mutants (K206A and K296A) that abolish the dilysine interaction in the N-lobe of human transferrin.

    abstract::Human transferrin (Tf) is responsible for the binding and transport of iron in the bloodstream of vertebrates. Delivery of this bound iron to cells occurs by a process of receptor-mediated endocytosis during which Tf releases its iron at the reduced endosomal pH of approximately 5.6. Iron release from Tf involves a la...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002050m

    authors: Nurizzo D,Baker HM,He QY,MacGillivray RT,Mason AB,Woodworth RC,Baker EN

    更新日期:2001-02-13 00:00:00

  • Differential scanning calorimetry study of local anesthetic effects on F1ATPase and submitochondrial particles.

    abstract::The differential scanning calorimetry trace of F1ATPase, prepared from beef heart submitochondrial particles, has a single sharp endothermic transition at 80.5 +/- 1.0 degrees C and a half-height peak width of 2.0 +/- 0.2 degrees. The transition enthalpy is 19 +/- 2 cal/g of protein. Submitochondrial particles (SMP) h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00328a022

    authors: Kresheck GC,Adade AB,Vanderkooi G

    更新日期:1985-03-26 00:00:00

  • pH dependence of amylin fibrillization.

    abstract::In type 2 diabetics, the hormone amylin misfolds into amyloid plaques implicated in the destruction of the pancreatic β-cells that make insulin and amylin. The aggregative misfolding of amylin is pH-dependent, and exposure of the hormone to acidic and basic environments could be physiologically important. Amylin has t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401164k

    authors: Jha S,Snell JM,Sheftic SR,Patil SM,Daniels SB,Kolling FW,Alexandrescu AT

    更新日期:2014-01-21 00:00:00

  • Catalytic and DNA binding properties of the ogg1 protein of Saccharomyces cerevisiae: comparison between the wild type and the K241R and K241Q active-site mutant proteins.

    abstract::The Ogg1 protein of Saccharomyces cerevisiae belongs to a family of DNA glycosylases and apurinic/apyrimidinic site (AP) lyases, the signature of which is the alpha-helix-hairpin-alpha-helix-Gly/Pro-Asp (HhH-GPD) active site motif together with a conserved catalytic lysine residue, to which we refer as the HhH-GPD/K f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992262n

    authors: Guibourt N,Castaing B,Van Der Kemp PA,Boiteux S

    更新日期:2000-02-22 00:00:00

  • Kinetic parameters for the elimination reaction catalyzed by triosephosphate isomerase and an estimation of the reaction's physiological significance.

    abstract::Kinetic parameters for triosephosphate isomerase catalysis of the elimination reaction of an equilibrium mixture of dihydroxyacetone phosphate (DHAP) and D-glyceraldehyde-3-phosphate (DGAP) to form methylglyoxal and phosphate ion are reported for the enzyme from rabbit muscle. Pseudo-first-order rate constants for the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00232a031

    authors: Richard JP

    更新日期:1991-05-07 00:00:00

  • Interaction of hemoglobin and its component alpha and beta chains with band 3 protein.

    abstract::The equilibrium binding of hemoglobin to isolated band 3 protein exhibited positive cooperativity [Hill coefficient = 1.65 +/- 0.1; total number of binding sites at pH 6.6 in 5 mM sodium phosphate buffer = 32 500 +/- 940 pmol/mg; Ka = (3.0 +/- 0.5) X 10(5) M-1]. The binding was reversible and ionic in nature as the bo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00359a054

    authors: Premachandra BR

    更新日期:1986-06-03 00:00:00

  • Thermodynamic characterization of deoxyribooligonucleotide duplexes containing bulges.

    abstract::Ultraviolet absorption techniques were used to study the thermodynamics of duplex formation for a DNA decamer, d(GCGAAAAGCG).d(CGCTTTTCGC), and a series of related duplexes, each of which contains a bulged base centered in the A.T tract. Thermodynamic parameters were obtained from nonlinear least-squares fits of the m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00230a031

    authors: LeBlanc DA,Morden KM

    更新日期:1991-04-23 00:00:00

  • 1H, 15N, 13C, and 13CO assignments of human interleukin-4 using three-dimensional double- and triple-resonance heteronuclear magnetic resonance spectroscopy.

    abstract::The assignment of the 1H, 15N, 13CO, and 13C resonances of recombinant human interleukin-4 (IL-4), a protein of 133 residues and molecular mass of 15.4 kDa, is presented based on a series of 11 three-dimensional (3D) double- and triple-resonance heteronuclear NMR experiments. These studies employ uniformly labeled 15N...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00132a026

    authors: Powers R,Garrett DS,March CJ,Frieden EA,Gronenborn AM,Clore GM

    更新日期:1992-05-05 00:00:00

  • Benzothiazepine binding domain of purified L-type calcium channels: direct labeling using a novel fluorescent diltiazem analogue.

    abstract::We have synthesized a series of N-propylamino-substituted benzazepinones (NPSBs) as specific probes for the benzothiazepinone (BTZ) binding domain of muscle L-type calcium channels (LTCCs). NPSBs were identified which possess high affinity for the channel after purification. We synthesized a fluorescent NPSB, DMBODIPY...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00010a039

    authors: Brauns T,Cai ZW,Kimball SD,Kang KC,Haugland RP,Berger W,Berjukov S,Hering S,Glossmann H,Striessnig J

    更新日期:1995-03-14 00:00:00

  • Dilatometric study of binary mixtures of phosphatidylcholines.

    abstract::Volumes of lipid dispersions as a function of temperature have been measured for two different kinds of binary mixtures of lecithins, (1) DMPC and DSPC and (2) DMPC and DC20PC. Emphasis was placed on DMPC-rich compositions so as to resolve ambiguities regarding solid-phase immiscibility in DMPC-DSPC mixtures. Special ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00586a032

    authors: Wilkinson DA,Nagle JF

    更新日期:1979-09-18 00:00:00

  • The function of the chloride ion in photosynthetic oxygen evolution.

    abstract::The involvement of Cl(-) and several other monovalent anions in photosynthetic oxygen evolution was studied using photosystem II membranes depleted of Cl(-) by dialysis. The results of these studies differ significantly from results obtained using other depletion methods. Binding studies with glycerol as a cryoprotect...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026175y

    authors: Olesen K,Andréasson LE

    更新日期:2003-02-25 00:00:00