Electron/proton coupling in bacterial nitric oxide reductase during reduction of oxygen.

Abstract:

:The respiratory nitric oxide reductase (NOR) from Paracoccus denitrificans catalyzes the two-electron reduction of NO to N(2)O (2NO + 2H(+) + 2e(-) --> N(2)O + H(2)O), which is an obligatory step in the sequential reduction of nitrate to dinitrogen known as denitrification. NOR has four redox-active cofactors, namely, two low-spin hemes c and b, one high-spin heme b(3), and a non-heme iron Fe(B), and belongs to same superfamily as the oxygen-reducing heme-copper oxidases. NOR can also use oxygen as an electron acceptor; this catalytic activity was investigated in this study. We show that the product in the steady-state reduction of oxygen is water. A single turnover of the fully reduced NOR with oxygen was initiated using the flow-flash technique, and the progress of the reaction monitored by time-resolved optical absorption spectroscopy. Two major phases with time constants of 40 micros and 25 ms (pH 7.5, 1 mM O(2)) were observed. The rate constant for the faster process was dependent on the O(2) concentration and is assigned to O(2) binding to heme b(3) at a bimolecular rate constant of 2 x 10(7) M(-)(1) s(-)(1). The second phase (tau = 25 ms) involves oxidation of the low-spin hemes b and c, and is coupled to the uptake of protons from the bulk solution. The rate constant for this phase shows a pH dependence consistent with rate limitation by proton transfer from an internal group with a pK(a) = 6.6. This group is presumably an amino acid residue that is crucial for proton transfer to the catalytic site also during NO reduction.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Flock U,Watmough NJ,Adelroth P

doi

10.1021/bi050524h

subject

Has Abstract

pub_date

2005-08-09 00:00:00

pages

10711-9

issue

31

eissn

0006-2960

issn

1520-4995

journal_volume

44

pub_type

杂志文章
  • Monoclonal antibodies defining blood group A variants with difucosyl type 1 chain (ALeb) and difucosyl type 2 chain (ALey).

    abstract::Three hybridomas secreting monoclonal antibodies, HH1, HH2, and HH3, defining different difucosyl A structures (ALeb or ALey), have been established. Antibody HH1 (IgG2a) reacts specifically with the difucosyl A structure irrespective of a type 1 or type 2 chain, while antibody HH2 (IgG3) reacts exclusively with the d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a024

    authors: Clausen H,McKibbin JM,Hakomori S

    更新日期:1985-10-22 00:00:00

  • Basic proline-rich proteins from human parotid saliva: complete covalent structures of proteins IB-1 and IB-6.

    abstract::The complete amino acid sequences of two basic proline-rich proteins, IB-1 and IB-6, from human parotid saliva have been determined. Fragments for sequence analysis were obtained by enzymatic digestions. The proteins have molecular weights of 9571 (IB-1) and 11,530 (IB-6) and contain 34 and 39 mol % proline, respectiv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00357a013

    authors: Kauffman D,Hofmann T,Bennick A,Keller P

    更新日期:1986-05-06 00:00:00

  • Communications between the high-affinity cyclic nucleotide binding sites in E. coli cyclic AMP receptor protein: effect of single site mutations.

    abstract::The binding of adenosine 3',5'-cyclic monophosphate (cAMP) and its nonfunctional analogue, guanosine 3',5'-cyclic monophosphate (cGMP), to the adenosine 3',5'-cyclic monophosphate receptor protein (CRP) from Escherichia coli was investigated by means of fluorescence and isothermal titration calorimetry (ITC) at pH 7.8...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026099z

    authors: Lin SH,Lee JC

    更新日期:2002-10-01 00:00:00

  • Significant catalytic roles for Glu47 and Gln 110 in all four of the C-C bond-making and -breaking steps of the reactions of acetohydroxyacid synthase II.

    abstract::Acetohydroxy acid synthase (AHAS) is a thiamin diphosphate (ThDP)-dependent enzyme that catalyzes the first common step in the biosynthesis of branched-chain amino acids, condensation of pyruvate with a second 2-ketoacid to form either acetolactate or acetohydroxybutyrate. AHAS isozyme II from Escherichia coli is spec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi102051h

    authors: Vyazmensky M,Steinmetz A,Meyer D,Golbik R,Barak Z,Tittmann K,Chipman DM

    更新日期:2011-04-19 00:00:00

  • Determination of the rate and yield of B-side quinone reduction in Rhodobacter capsulatus reaction centers.

    abstract::In the native purple bacterial reaction center (RC), light-driven charge separation utilizes only the A-side cofactors, with the symmetry related B-side inactive. The process is initiated by electron transfer from the excited primary donor (P*) to the A-side bacteriopheophytin (P* --> P+ H(A)-) in approximately 3 ps. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060277x

    authors: Kee HL,Laible PD,Bautista JA,Hanson DK,Holten D,Kirmaier C

    更新日期:2006-06-13 00:00:00

  • An in vitro peptide complementation assay for CYT-18-dependent group I intron splicing reveals a new role for the N-terminus.

    abstract::The mitochondrial tyrosyl tRNA synthetase from Neurospora crassa (CYT-18 protein) is a bifunctional group I intron splicing cofactor. CYT-18 is capable of splicing multiple group I introns from a wide variety of sources by stabilizing the catalytically active intron structures. CYT-18 and mt TyrRSs from related fungal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401614h

    authors: Geng C,Paukstelis PJ

    更新日期:2014-03-04 00:00:00

  • Purification and characterization of corn glutathione S-transferase.

    abstract::Two glutathione S-transferase (GST) activities have been identified and purified from etiolated corn tissue. The first, designated GST I enzyme, is constitutively present in corn tissue, and the second, designated GST II enzyme, is present only in tissue which has been treated with chemical antidotes which protect cor...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00274a011

    authors: Mozer TJ,Tiemeier DC,Jaworski EG

    更新日期:1983-03-01 00:00:00

  • Expression and structural and functional properties of human ferritin L-chain from Escherichia coli.

    abstract::The human ferritin L-chain cDNA was cloned into a vector for overproduction in Escherichia coli, under the regulation of a lambda promoter. The plasmid obtained contains the full L-chain coding region modified at the first two codons. It is able to direct the synthesis of the L-chain which can constitute up to 15% of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00438a040

    authors: Levi S,Salfeld J,Franceschinelli F,Cozzi A,Dorner MH,Arosio P

    更新日期:1989-06-13 00:00:00

  • Structure of alpha-glycerophosphate oxidase from Streptococcus sp.: a template for the mitochondrial alpha-glycerophosphate dehydrogenase.

    abstract::The FAD-dependent alpha-glycerophosphate oxidase (GlpO) from Enterococcus casseliflavus and Streptococcus sp. was originally studied as a soluble flavoprotein oxidase; surprisingly, the GlpO sequence is 30-43% identical to those of the alpha-glycerophosphate dehydrogenases (GlpDs) from mitochondrial and bacterial sour...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701685u

    authors: Colussi T,Parsonage D,Boles W,Matsuoka T,Mallett TC,Karplus PA,Claiborne A

    更新日期:2008-01-22 00:00:00

  • The dimerization stability of the HLH-LZ transcription protein family is modulated by the leucine zippers: a CD and NMR study of TFEB and c-Myc.

    abstract::In the HLH-LZ protein family, the helix-loop-helix DNA-binding dimerization domain is followed in the sequence by a leucine zipper motif. The precise function of this second dimerization domain is still unclear, since the HLH motif of a subset of this family has been shown to be necessary and sufficient for dimerizati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00203a027

    authors: Muhle-Goll C,Gibson T,Schuck P,Schubert D,Nalis D,Nilges M,Pastore A

    更新日期:1994-09-20 00:00:00

  • The purple to blue transition of bacteriorhodopsin is accompanied by a loss of the hexagonal lattice and a conformational change.

    abstract::X-ray diffraction measurements show that in contrast to the purple membrane, the bacteriorhodopsin molecules are not organized in a hexagonal lattice in the deionized blue membrane. Addition of Ca2+ restores both the purple color and the normal (63 A) hexagonal protein lattice. In the blue state, the circular dichrois...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00449a031

    authors: Heyn MP,Dudda C,Otto H,Seiff F,Wallat I

    更新日期:1989-11-14 00:00:00

  • Photoaffinity labeling of the human receptor for urokinase-type plasminogen activator using a decapeptide antagonist. Evidence for a composite ligand-binding site and a short interdomain separation.

    abstract::Binding of urokinase-type plasminogen activator (uPA) to its cellular receptor (uPAR) renders the cell surface a favored site for plasminogen activation. Recently, a 15-mer peptide antagonist of the uPA-uPAR interaction, with an IC50 value of 10 nM, was identified using phage display technology [Goodson, R. J., Doyle,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972787k

    authors: Ploug M,Ostergaard S,Hansen LB,Holm A,Danø K

    更新日期:1998-03-17 00:00:00

  • Univalent binding of the Cry1Ab toxin of Bacillus thuringiensis to a conserved structural motif in the cadherin receptor BT-R1.

    abstract::The Cry1Ab toxin produced by Bacillus thuringiensis (Bt) exerts insecticidal action upon binding to BT-R1, a cadherin receptor localized in the midgut epithelium of the tobacco hornworm Manduca sexta [Dorsch, J. A., Candas, M., Griko, N. B., Maaty, W. S., Midboe, E. G., Vadlamudi, R. K., and Bulla, L. A., Jr. (2002) C...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700769s

    authors: Griko NB,Rose-Young L,Zhang X,Carpenter L,Candas M,Ibrahim MA,Junker M,Bulla LA Jr

    更新日期:2007-09-04 00:00:00

  • Turkey ovomucoid third domain inhibits eight different serine proteinases of varied specificity on the same ...Leu18-Glu19 ... reactive site.

    abstract::We show that eight different serine proteinases--bovine chymotrypsins A and B, porcine pancreatic elastase I, proteinase K, Streptomyces griseus proteinases A and B, and subtilisins BPN' and Carlsberg--interact with turkey ovomucoid third domain at the same Leu18-Glu19 peptide bond, the reactive site of the inhibitor....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00341a007

    authors: Ardelt W,Laskowski M Jr

    更新日期:1985-09-24 00:00:00

  • Increased Turnover at Limiting O2 Concentrations by the Thr(387) → Ala Variant of HIF-Prolyl Hydroxylase PHD2.

    abstract::PHD2 is a 2-oxoglutarate, non-heme Fe(2+)-dependent oxygenase that senses O2 levels in human cells by hydroxylating two prolyl residues in the oxygen-dependent degradation domain (ODD) of HIF1α. Identifying the active site contacts that determine the rate of reaction at limiting O2 concentrations is crucial for unders...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi501540c

    authors: Pektas S,Taabazuing CY,Knapp MJ

    更新日期:2015-05-12 00:00:00

  • Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily.

    abstract::Pseudomonas aeruginosa PA4872 was identified by sequence analysis as a structurally and functionally novel member of the PEP mutase/isocitrate lyase superfamily and therefore targeted for investigation. Substrate screens ruled out overlap with known catalytic functions of superfamily members. The crystal structure of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701954p

    authors: Narayanan BC,Niu W,Han Y,Zou J,Mariano PS,Dunaway-Mariano D,Herzberg O

    更新日期:2008-01-08 00:00:00

  • The malonyl/acetyltransferase and beta-ketoacyl synthase domains of the animal fatty acid synthase can cooperate with the acyl carrier protein domain of either subunit.

    abstract::The active form of the animal fatty acid synthase (FAS) is a dimer of identical multifunctional polypeptides, each containing seven discrete functional domains, that cooperate to form two centers for palmitate synthesis. To assess the importance of domain cooperation across the subunit interface in the reaction mechan...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971886v

    authors: Joshi AK,Witkowski A,Smith S

    更新日期:1998-02-24 00:00:00

  • A synthetic 33-residue analogue of bovine brain calmodulin calcium binding site III: synthesis, purification, and calcium binding.

    abstract::The sequential solid-phase synthesis of a peptide analogue of bovine brain calmodulin calcium binding site III covering residues 81-113 of the natural sequence is described. Methionine-109 is replaced by a leucine residue to avoid complications in the synthesis and purification. In an attempt to relate the structure o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00393a019

    authors: Reid RE

    更新日期:1987-09-22 00:00:00

  • Enzymic and physicochemical properties of Streptomyces griseus trypsin.

    abstract::Streptomyces griseus trypsin has been isolated from Pronase by ion-exchange chromatography on CM-Sephadex and SE-Sephadex. The isolated enzyme was homogeneous by the criteria tested except for a low degree of contamination by an enzyme with nontryptic activity. The latter could be partially resolved by chromatography ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00677a010

    authors: Olafson RW,Smillie LB

    更新日期:1975-03-25 00:00:00

  • Enzymatic properties of proteolytic derivatives of human alpha-thrombin.

    abstract::The use of derivatives of alpha-thrombin obtained by limited proteolysis, that have only a single peptide bond cleaved, allowed the unequivocal correlation between the change in covalent structure and alteration of the enzymatic properties. beta T-Thrombin contains a single cleavage in the surface loop corresponding t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00406a049

    authors: Hofsteenge J,Braun PJ,Stone SR

    更新日期:1988-03-22 00:00:00

  • Probing for and Quantifying Agonist Hydrogen Bonds in α6β2 Nicotinic Acetylcholine Receptors.

    abstract::Designing subtype-selective agonists for neuronal nicotinic acetylcholine receptors is a challenging and significant goal aided by intricate knowledge of each subtype's binding patterns. We previously reported that in α6β2 receptors, acetylcholine makes a functional cation-π interaction with Trp149, but nicotine and T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00213

    authors: Post MR,Lester HA,Dougherty DA

    更新日期:2017-04-04 00:00:00

  • Site of attachment of 11-cis-retinal in bovine rhodopsin.

    abstract::A dipeptide containing the binding site for retinal in bovine rhodopsin has been isolated and its sequence determined. Rhodopsin containing [11-3H]retinal was prepared in chromatographically pure form, and the [3H]retinal was reductively linked to its binding site on opsin by using borane--dimethylamine. The [3H]retin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00563a027

    authors: Wang JK,McDowell JH,Hargrave PA

    更新日期:1980-10-28 00:00:00

  • Fidelity of DNA recognition by the EcoRV restriction/modification system in vivo.

    abstract::The EcoRV restriction/modification system consists of two enzymes that recognize the DNA sequence GATATC. The EcoRV restriction endonuclease cleaves DNA at this site, but the DNA of Escherichia coli carrying the EcoRV system is protected from this reaction by the EcoRV methyltransferase. However, in vitro, the EcoRV n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00500a003

    authors: Taylor JD,Goodall AJ,Vermote CL,Halford SE

    更新日期:1990-12-04 00:00:00

  • Parameters affecting low-pH-mediated fusion of liposomes with the plasma membrane of cells infected with influenza virus.

    abstract::Unilamellar liposomes can be fused at low pH with the plasma membrane of cells that express the hemagglutinin glycoprotein of influenza virus on their surface [van Meer, G., & Simons, K. (1983) J. Cell Biol. 97, 1365-1374]. Here, we have resolved this fusion process into two kinetically distinct steps. The first and m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00335a030

    authors: van Meer G,Davoust J,Simons K

    更新日期:1985-07-02 00:00:00

  • SmgGDS-607 Regulation of RhoA GTPase Prenylation Is Nucleotide-Dependent.

    abstract::Protein prenylation involves the attachment of a hydrophobic isoprenoid moiety to the C-terminus of proteins. Several small GTPases, including members of the Ras and Rho subfamilies, require prenylation for their normal and pathological functions. Recent work has suggested that SmgGDS proteins regulate the prenylation...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00567

    authors: Jennings BC,Lawton AJ,Rizk Z,Fierke CA

    更新日期:2018-07-24 00:00:00

  • Amino-terminal domain of TIF2 is involved in competing for corepressor binding to glucocorticoid and progesterone receptors.

    abstract::Both agonist- and antagonist-bound glucocorticoid receptors (GRs) and progesterone receptors (PRs) regulate gene transcription with the assistance of corepressors (NCoR and SMRT) and coactivators (TIF2/GRIP1, SRC1, and AIB1). Receptor binding of these cofactors is competitive and is considered to involve interactions ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7004575

    authors: Wang D,Wang Q,Awasthi S,Simons SS Jr

    更新日期:2007-07-10 00:00:00

  • Energy coupling in Escherichia coli DNA gyrase: the relationship between nucleotide binding, strand passage, and DNA supercoiling.

    abstract::Binding of the nonhydrolyzable ATP analogue 5'-adenylyl-beta, gamma-imidodiphosphate (ADPNP) to Escherichia coli DNA gyrase can lead to a limited noncatalytic supercoiling of DNA. Here we examine the efficiency of coupling between ADPNP binding and the change in linking number either of positively or negatively superc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952433y

    authors: Bates AD,O'Dea MH,Gellert M

    更新日期:1996-02-06 00:00:00

  • Movement of the Rieske iron-sulfur protein in the p-side bulk aqueous phase: effect of lumenal viscosity on redox reactions of the cytochrome b6f complex.

    abstract::Based on the atomic structures of the mitochondrial cytochrome bc(1) complex, it has been proposed that the soluble domain of the [2Fe-2S] Rieske iron-sulfur protein (ISP) must rotate by ca. 60 degrees and translate through an appreciable distance between two binding sites, proximal to cytochrome c(1) and to the lumen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9921992

    authors: Heimann S,Ponamarev MV,Cramer WA

    更新日期:2000-03-14 00:00:00

  • Localization in the Golgi apparatus of rat liver UDP-Gal:glucosylceramide beta 1----4galactosyltransferase.

    abstract::The presence and subcellular localization of UDP-Gal:glucosylceramide beta 1----4galactosyltransferase (GalT-2) was investigated in rat liver. For this purpose, purified Golgi apparatus, endoplasmic reticulum, and plasma membrane fractions were prepared from the liver and used as the enzyme source for detecting GalT-2...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00224a021

    authors: Trinchera M,Fiorilli A,Ghidoni R

    更新日期:1991-03-12 00:00:00

  • Structure, topology, and tilt of cell-signaling peptides containing nuclear localization sequences in membrane bilayers determined by solid-state NMR and molecular dynamics simulation studies.

    abstract::Cell-signaling peptides have been extensively used to transport functional molecules across the plasma membrane into living cells. These peptides consist of a hydrophobic sequence and a cationic nuclear localization sequence (NLS). It has been assumed that the hydrophobic region penetrates the hydrophobic lipid bilaye...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061895g

    authors: Ramamoorthy A,Kandasamy SK,Lee DK,Kidambi S,Larson RG

    更新日期:2007-01-30 00:00:00