Microsatellite variation and population structure in a declining Australian Hylid Litoria aurea.

Abstract:

:The green and golden bell frog (Litoria aurea) was once a common Australian Hylid. Today, many populations are small and fragmented as a result of dramatic declines in distribution and abundance. We undertook a large-scale assessment of genetic structure and diversity in L. aurea using four species-specific microsatellite markers. Twenty-one locations were sampled from throughout the species range covering 1000 km of the east coast of Australia. Levels of allelic diversity and heterozygosity were high (uncorrected mean alleles/locus and H(E) were 4.8-8.8 and 0.43-0.8, respectively) compared to other amphibian species and significant differences among sampled sites were recorded. Despite recent population declines, no sites displayed a genetic signature indicative of a population bottleneck. Significant genetic structuring (overall F(ST) 0.172) was detected throughout the species range, but was relatively low compared to previous amphibian studies employing microsatellites. In addition we found that some areas sampled within continuous habitat showed evidence of weak genetic structuring (data subset F(ST) 0.034). We conclude that maintaining areas of continuous habitat is critical to the conservation of the species and argue that population recovery and/or persistence in all areas sampled is possible if appropriate protection and management are afforded.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Burns EL,Eldridge MD,Houlden BA

doi

10.1111/j.1365-294X.2004.02190.x

subject

Has Abstract

pub_date

2004-07-01 00:00:00

pages

1745-57

issue

7

eissn

0962-1083

issn

1365-294X

pii

MEC2190

journal_volume

13

pub_type

杂志文章
  • Mitochondrial DNA phylogeography and population history of the grey wolf canis lupus

    abstract::The grey wolf (Canis lupus) and coyote (C. latrans) are highly mobile carnivores that disperse over great distances in search of territories and mates. Previous genetic studies have shown little geographical structure in either species. However, population genetic structure is also influenced by past isolation events ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1999.00825.x

    authors: Vila C,Amorim IR,Leonard JA,Posada D,Castroviejo J,Petrucci-Fonseca F,Crandall KA,Ellegren H,Wayne RK

    更新日期:1999-12-01 00:00:00

  • Genetic analysis of the population structure of socially organized oystercatchers (Haematopus ostralegus) using microsatellites.

    abstract::On the island of Schiermonnikoog (The Netherlands), the breeding population of oystercatchers can be divided into two groups: 'residents' and 'leapfrogs', based on their distinct social characteristics and limited probabilities of status change between breeding seasons. In order to investigate whether this social orga...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1999.00548.x

    authors: Van Treuren R,Bijlsma R,Tinbergen JM,Heg D,Van de Zande L

    更新日期:1999-02-01 00:00:00

  • Genetic variability and phylogeography of the invasive zebra mussel, Dreissena polymorpha (Pallas).

    abstract::The zebra mussel, Dreissena polymorpha (Pallas), a bivalve species originally native to the Black and Caspian seas, has invaded Ireland in the last decade. Five microsatellite loci were used to investigate genetic diversity and population structure in 10 populations across Europe (Ireland, UK, the Netherlands and Roma...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02530.x

    authors: Astanei I,Gosling E,Wilson J,Powell E

    更新日期:2005-05-01 00:00:00

  • Mating system of the Eurasian badger, Meles meles, in a high density population.

    abstract::Badgers are facultatively social, forming large groups at high density. Group-living appears to have high reproductive costs for females, and may lead to increased levels of inbreeding. The extent of female competition for reproduction has been estimated from field data, but knowledge of male reproductive success and ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02401.x

    authors: Carpenter PJ,Pope LC,Greig C,Dawson DA,Rogers LM,Erven K,Wilson GJ,Delahay RJ,Cheeseman CL,Burke T

    更新日期:2005-01-01 00:00:00

  • Sculpin hybrid zones: natural laboratories for the early stages of speciation.

    abstract::Firmly rooted as we are in the genomic era, it can seem incredible that as recently as 1974, Lewontin declared, 'we know virtually nothing about the genetic changes that occur in species formation'. To the contrary, we now know the genetic architecture of phenotypic differences and reproductive isolation between speci...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/j.1365-294X.2009.04209.x

    authors: Sweigart A

    更新日期:2009-06-01 00:00:00

  • Analysis of population genetic structure with RAPD markers.

    abstract::Recent advances in the application of the polymerase chain reaction make it possible to score individuals at a large number of loci. The RAPD (random amplified polymorphic DNA) method is one such technique that has attracted widespread interest. The analysis of population structure with RAPD data is hampered by the la...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294x.1994.tb00109.x

    authors: Lynch M,Milligan BG

    更新日期:1994-04-01 00:00:00

  • Comparative genome scan detects host-related divergent selection in the grasshopper Hesperotettix viridis.

    abstract::In this study, we used a comparative genome scan to examine patterns of population differentiation with respect to host plant use in Hesperotettix viridis, a Nearctic oligophagous grasshopper locally specialized on various Asteraceae including Solidago, Gutierrezia, and Ericameria. We identified amplified fragment len...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04792.x

    authors: Apple JL,Grace T,Joern A,St Amand P,Wisely SM

    更新日期:2010-09-01 00:00:00

  • Mitochondrial DNA variable number tandem repeats (VNTRs): utility and problems in molecular ecology.

    abstract::Analysis of mitochondrial (mt)DNA size polymorphism in the form of variable number tandem repeats (mtVNTRs) has become an increasingly popular methodology for addressing questions in molecular ecology. When detected by PCR, mtVNTR analysis can provide a sensitive, rapid, and cost-effective measure of genetic variabili...

    journal_title:Molecular ecology

    pub_type: 杂志文章,评审

    doi:10.1046/j.1365-294x.1998.00495.x

    authors: Lunt DH,Whipple LE,Hyman BC

    更新日期:1998-11-01 00:00:00

  • Population structure of the parasitic nematode Anguillicola crassus, an invader of declining North Atlantic eel stocks.

    abstract::Probably half of all animal species exhibit a parasitic lifestyle and numerous parasites have recently expanded their distribution and host ranges due to anthropogenic activities. Here, we report on the population genetic structure of the invasive nematode Anguillicola crassus, a parasite in freshwater eels, which rec...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.03855.x

    authors: Wielgoss S,Taraschewski H,Meyer A,Wirth T

    更新日期:2008-08-01 00:00:00

  • From connectivity to isolation: genetic consequences of population fragmentation in capercaillie across Europe.

    abstract::The capercaillie inhabits a continuous range in large parts of the Palearctic boreal forest, but is patchily distributed in temperate Europe. An ongoing population decline, largely related to human land use changes, has been most pronounced in central and western Europe, where some local populations have become extinc...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01873.x

    authors: Segelbacher G,Höglund J,Storch I

    更新日期:2003-07-01 00:00:00

  • Quantitative and qualitative assessment of pollen DNA metabarcoding using constructed species mixtures.

    abstract::Pollen DNA metabarcoding-marker-based genetic identification of potentially mixed-species pollen samples-has applications across a variety of fields. While basic species-level pollen identification using standard DNA barcode markers is established, the extent to which metabarcoding (a) correctly assigns species identi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14840

    authors: Bell KL,Burgess KS,Botsch JC,Dobbs EK,Read TD,Brosi BJ

    更新日期:2019-01-01 00:00:00

  • Genetic patterns across an invasion's history: a test of change versus stasis for the Eurasian round goby in North America.

    abstract::Biological invasions comprise accidental evolutionary experiments, whose genetic compositions underlie relative success, spread and persistence in new habitats. However, little is known about whether, or how, their population genetic patterns change temporally and/or spatially across the invasion's history. Theory pre...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13997

    authors: Snyder MR,Stepien CA

    更新日期:2017-02-01 00:00:00

  • Seascape genetics along environmental gradients in the Arabian Peninsula: insights from ddRAD sequencing of anemonefishes.

    abstract::Understanding the processes that shape patterns of genetic structure across space is a central aim of landscape genetics. However, it remains unclear how geographical features and environmental variables shape gene flow, particularly for marine species in large complex seascapes. Here, we evaluated the genomic composi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13471

    authors: Saenz-Agudelo P,Dibattista JD,Piatek MJ,Gaither MR,Harrison HB,Nanninga GB,Berumen ML

    更新日期:2015-12-01 00:00:00

  • Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex).

    abstract::Black rats are major invasive vertebrate pests with severe ecological, economic and health impacts. Remarkably, their evolutionary history has received little attention, and there is no firm agreement on how many species should be recognized within the black rat complex. This species complex is native to India and Sou...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12149

    authors: Pagès M,Bazin E,Galan M,Chaval Y,Claude J,Herbreteau V,Michaux J,Piry S,Morand S,Cosson JF

    更新日期:2013-02-01 00:00:00

  • Prevalence of interspecific hybrids amongst asexual fungal endophytes of grasses.

    abstract::Epichloë endophytes are fungal symbionts of grasses that span a continuum including asexual mutualists that are vertically transmitted, obligately sexual pathogens that are horizontally transmitted, and mixed-strategy symbionts with both mutualistic and pathogenic capabilities. Here we show that processes of genome ev...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02138.x

    authors: Moon CD,Craven KD,Leuchtmann A,Clement SL,Schardl CL

    更新日期:2004-06-01 00:00:00

  • These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists.

    abstract::Sequencing reduced-representation libraries of restriction site-associated DNA (RADseq) to identify single nucleotide polymorphisms (SNPs) is quickly becoming a standard methodology for molecular ecologists. Because of the scale of RADseq data sets, putative loci cannot be assessed individually, making the process of ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14792

    authors: O'Leary SJ,Puritz JB,Willis SC,Hollenbeck CM,Portnoy DS

    更新日期:2018-07-10 00:00:00

  • Demographic modelling with whole-genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization.

    abstract::Modes and mechanisms of speciation are best studied in young species pairs. In older taxa, it is increasingly difficult to distinguish what happened during speciation from what happened after speciation. Lake Victoria cichlids in the genus Pundamilia encompass a complex of young species and polymorphic populations. On...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13838

    authors: Meier JI,Sousa VC,Marques DA,Selz OM,Wagner CE,Excoffier L,Seehausen O

    更新日期:2017-01-01 00:00:00

  • Long-term population isolation in the endangered tropical tree species Caesalpinia echinata Lam. revealed by chloroplast microsatellites.

    abstract::Habitat fragmentation represents the single most serious threat to the survival of tropical ecosystems. In formulating strategies to counteract the detrimental effects of fragmentation, knowledge of the levels and patterns of genetic diversity within and between natural populations is vital to the establishment of any...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01991.x

    authors: Lira CF,Cardoso SR,Ferreira PC,Cardoso MA,Provan J

    更新日期:2003-12-01 00:00:00

  • Adaptation to warmer climates by parallel functional evolution of CBF genes in Arabidopsis thaliana.

    abstract::The evolutionary processes and genetics underlying local adaptation at a specieswide level are largely unknown. Recent work has indicated that a frameshift mutation in a member of a family of transcription factors, C-repeat binding factors or CBFs, underlies local adaptation and freezing tolerance divergence between t...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13711

    authors: Monroe JG,McGovern C,Lasky JR,Grogan K,Beck J,McKay JK

    更新日期:2016-08-01 00:00:00

  • Low genetic differentiation among seasonal cohorts in Senecio vulgaris as revealed by amplified fragment length polymorphism analysis.

    abstract::Common groundsel, Senecio vulgaris (Asteraceae), is a highly selfing semelparous ephemeral weed that belongs to the few plant species in central Europe capable of growing, flowering and fruiting all year round. In temperate climates, flowering S. vulgaris cohorts were found to appear up to three times per year. Using ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01915.x

    authors: Haldimann P,Steinger T,Müller-Schärer H

    更新日期:2003-10-01 00:00:00

  • Amassing diversity in an ancient lake: evolution of a morphologically diverse parthenogenetic gastropod assemblage in Lake Malawi.

    abstract::Exceptional ecological niche diversity, clear waters and unique divergent selection pressures have often been invoked to explain high morphological and genetic diversity of taxa within ancient lakes. However, it is possible that in some ancient lake taxa high diversity has arisen because these historically stable envi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.03171.x

    authors: Genner MJ,Todd JA,Michel E,Erpenbeck D,Jimoh A,Joyce DA,Piechocki A,Pointier JP

    更新日期:2007-02-01 00:00:00

  • Somatic mutations as a useful tool for studying clonal dynamics in trees.

    abstract::The seemingly eternal cycles of clonal growth in many tree species, with members of Populus (aspen, poplars, cottonwoods and the like) featuring most prominently, provoke a number of questions on the interface between ecology, genetics and forestry. In this issue, two groups present their approaches to clonal dynamics...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.03964.x

    authors: Heinze B,Fussi B

    更新日期:2008-11-01 00:00:00

  • Hybridization at an ecotone: ecological and genetic barriers between three Iberian vipers.

    abstract::The formation of stable genetic boundaries between emerging species is often diagnosed by reduced hybrid fitness relative to parental taxa. This reduced fitness can arise from endogenous and/or exogenous barriers to gene flow. Although detecting exogenous barriers in nature is difficult, we can estimate the role of ec...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12671

    authors: Tarroso P,Pereira RJ,Martínez-Freiría F,Godinho R,Brito JC

    更新日期:2014-03-01 00:00:00

  • Genetic heterogeneity among intertidal habitats in the flat periwinkle, Littorina obtusata.

    abstract::Comparisons among patterns exhibited by functionally distinct genetic markers have been widely used to infer the impacts of demography and selection in structuring genetic variation in natural populations. However, such multilocus comparisons remain an indirect evaluation of selection at particular candidate loci; ide...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03323.x

    authors: Schmidt PS,Phifer-Rixey M,Taylor GM,Christner J

    更新日期:2007-06-01 00:00:00

  • Sex-specific genetic structure in Schistosoma mansoni: evolutionary and epidemiological implications.

    abstract::We studied the population genetic structure of 360 and 1247 adult Schistosoma mansoni using seven microsatellite and seven random amplified polymorphic DNA (RAPD) markers, respectively. Parasites were collected from their natural definitive host Rattus rattus in Guadeloupe (West Indies). We found a sex-specific geneti...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01518.x

    authors: Prugnolle F,De Meeûs T,Durand P,Sire C,Théron A

    更新日期:2002-07-01 00:00:00

  • Signature of sexual conflict is actually conflict resolved.

    abstract::There has been substantial interest of late in using population genetic methods to study sexual conflict, where an allele increases the fitness of one sex at some cost to the other (Mank, 2017). Population genomic scans for sexual conflict offer an important advance given the difficulties of identifying antagonistic a...

    journal_title:Molecular ecology

    pub_type: 新闻

    doi:10.1111/mec.15311

    authors: Mank JE,Shu JJ,Wright AE

    更新日期:2020-01-01 00:00:00

  • Evolutionary insight from whole-genome sequencing of experimentally evolved microbes.

    abstract::Experimental evolution (EE) combined with whole-genome sequencing (WGS) has become a compelling approach to study the fundamental mechanisms and processes that drive evolution. Most EE-WGS studies published to date have used microbes, owing to their ease of propagation and manipulation in the laboratory and relatively...

    journal_title:Molecular ecology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-294X.2012.05484.x

    authors: Dettman JR,Rodrigue N,Melnyk AH,Wong A,Bailey SF,Kassen R

    更新日期:2012-05-01 00:00:00

  • Comparison of population genetic patterns in two widespread freshwater mussels with contrasting life histories in western North America.

    abstract::We investigate population genetic structuring in Margaritifera falcata, a freshwater mussel native to western North America, across the majority of its geographical range. We find shallow rangewide genetic structure, strong population-level structuring and very low population diversity in this species, using both mito...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12557

    authors: Mock KE,Brim Box JC,Chong JP,Furnish J,Howard JK

    更新日期:2013-12-01 00:00:00

  • Intestinal microbiota in fishes: what's known and what's not.

    abstract::High-throughput sequencing approaches have enabled characterizations of the community composition of numerous gut microbial communities, which in turn has enhanced interest in their diversity and functional relationships in different groups of vertebrates. Although fishes represent the greatest taxonomic and ecologica...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12699

    authors: Clements KD,Angert ER,Montgomery WL,Choat JH

    更新日期:2014-04-01 00:00:00

  • Genomic islands of divergence linked to ecotypic variation in sockeye salmon.

    abstract::Regions of the genome displaying elevated differentiation (genomic islands of divergence) are thought to play an important role in local adaptation, especially in populations experiencing high gene flow. However, the characteristics of these islands as well as the functional significance of genes located within them r...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13933

    authors: Larson WA,Limborg MT,McKinney GJ,Schindler DE,Seeb JE,Seeb LW

    更新日期:2017-01-01 00:00:00