Interfacial catalysis by phospholipase A2: the rate-limiting step for enzymatic turnover.

Abstract:

:The kinetics of the phospholipase A2-catalyzed hydrolysis of bilayer vesicles and mixed micelles of several oxyglycero and thioglycero analogues of phospholipids have been studied. The results with vesicles show that, depending on the source of the enzyme, the rates of hydrolysis of the oxy-containing long-chain phosphatidylmethanols are 2.5- to 28-fold higher compared to the rates of hydrolysis of the analogous thio substrates. The oxygen to sulfur substitution does not significantly alter the affinities of the enzymes for the reaction products or calcium. Since it is unlikely that sulfur substitution changes the rate constants for the formation and dissociation of the enzyme-product complex by the same factor, the element effects seen in the rates of hydrolysis of the oxy- and thioester phospholipids in vesicles are primarily due to a change in the rate constant for the chemical step of the catalytic turnover cycle. For bovine pancreatic phospholipase A2, various mutants with lower catalytic activity were used to show that the value of the element effect does not increase in the mutants. These results establish that, for the pancreatic phospholipase A2, the element effect is fully expressed, and the chemical step is fully rate-limiting for both oxyglycero and thioglycero phospholipids in vesicles. It was found that the element effect decreases from 7 to 1 when long-chain phosphatidylmethanols are present in micelles of a neutral diluent. This result suggests that the chemical step is not rate-limiting during the hydrolysis of these mixed micelle substrates.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Jain MK,Yu BZ,Rogers J,Gelb MH,Tsai MD,Hendrickson EK,Hendrickson HS

doi

10.1021/bi00149a014

subject

Has Abstract

pub_date

1992-09-01 00:00:00

pages

7841-7

issue

34

eissn

0006-2960

issn

1520-4995

journal_volume

31

pub_type

杂志文章
  • Comparison of two metal-dependent pyruvate aldolases related by convergent evolution: substrate specificity, kinetic mechanism, and substrate channeling.

    abstract::HpaI and BphI are two pyruvate class II aldolases found in aromatic meta-cleavage degradation pathways that catalyze similar reactions but are not related in sequence. Steady-state kinetic analysis of the aldol addition reactions and product inhibition assays showed that HpaI exhibits a rapid equilibrium random order ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100251u

    authors: Wang W,Baker P,Seah SY

    更新日期:2010-05-04 00:00:00

  • Identification of the collagenous proteins synthesized by cultured cells from human skin.

    abstract::Cells cultured from human skin synthesize precursor forms of types I and III collagens. After denaturation and reduction, the polypeptide chains obtained from these molecules had molecular weights estimated to be 140,000 and 120, 000. The larger chains, the pro alpha chains, are believed to be derived from the origina...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00679a007

    authors: Lichtenstein JR,Byers PH,Smith BD,Martin GR

    更新日期:1975-04-22 00:00:00

  • Probing histidine-substrate interactions in tyrosyl-tRNA synthetase using asparagine and glutamine replacements.

    abstract::We have analyzed the interactions of a histidine residue with a substrate using site-directed mutagenesis. Previous studies on tyrosyl-tRNA synthetase from Bacillus stearothermophilus have shown that a histidine residue (His-48) makes an interaction with ATP, which is improved on mutating Thr-51----Pro-51. We find on ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00340a022

    authors: Lowe DM,Fersht AR,Wilkinson AJ,Carter P,Winter G

    更新日期:1985-09-10 00:00:00

  • Role of Gly117 in the cation/melibiose symport of MelB of Salmonella typhimurium.

    abstract::The melibiose permease of Salmonella typhimurium (MelB(St)) catalyzes symport of melibiose with Na(+), Li(+), or H(+), and bioinformatics analysis indicates that a conserved Gly117 (helix IV) is part of the Na(+)-binding site. We mutated Gly117 to Ala, Pro, Trp, or Arg; the effects on melibiose transport and binding o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300230h

    authors: Guan L,Jakkula SV,Hodkoff AA,Su Y

    更新日期:2012-04-03 00:00:00

  • Entrapment of Water at the Transmembrane Helix-Helix Interface of Quiescin Sulfhydryl Oxidase 2.

    abstract::Little is known about how a membrane can regulate interactions between transmembrane helices. Here, we show that strong self-interaction of the transmembrane helix of human quiescin sulfhydryl oxidase 2 rests on a motif of conserved amino acids comprising one face of the helix. Atomistic molecular dynamics simulations...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01239

    authors: Ried CL,Scharnagl C,Langosch D

    更新日期:2016-03-08 00:00:00

  • Kinetic analysis of product inhibition in human manganese superoxide dismutase.

    abstract::Manganese superoxide dismutase (MnSOD) cycles between the Mn(II) and Mn(III) states during the catalyzed disproportionation of O(2)(*-), a catalysis that is limited at micromolar levels of superoxide by a peroxide-inhibited complex with the metal. We have investigated the role in catalysis and inhibition of the conser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011047f

    authors: Hearn AS,Stroupe ME,Cabelli DE,Lepock JR,Tainer JA,Nick HS,Silverman DN

    更新日期:2001-10-09 00:00:00

  • Differential induction of pS2 and cathepsin D mRNAs by structurally altered estrogens.

    abstract::The influence of structural alterations to the estradiol-17 beta (E2) molecule on the induction of pS2 and Cathepsin D (Cath D) mRNAs has been examined by Northern analysis of RNA extracted from MCF-7 cells. Exposure of cultures to estratriene did not affect the level of expression of these estrogen-responsive genes. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00078a028

    authors: Pilat MJ,Hafner MS,Kral LG,Brooks SC

    更新日期:1993-07-13 00:00:00

  • Tri-partite assay for studying exon ligation by the ai5gamma group II intron.

    abstract::Group II introns self-splice via a two-step mechanism: cleavage at the 5' splice site followed by exon ligation at the 3' splice site. The second step has been difficult to study in vitro because it is generally faster than the first. Herein we describe development and partial kinetic characterization of a novel assay...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000808w

    authors: Bar-Shalom A,Moore MJ

    更新日期:2000-08-22 00:00:00

  • Binding of Escherichia coli ribonucleic acid polymerase holoenzyme to a bacteriophage T7 promoter-containing fragment: selectivity exists over a wide range of solution conditions.

    abstract::The selectivity of binding of Escherichia coli RNA polymerase holoenzyme to a promoter-containing fragment of T7 DNA has been investigated over a range of solution conditions by using a double-label nitrocellulose filter binding assay. A 32P-labeled HaeIII restriction fragment of T7 D111 DNA containing the A1 and D pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00556a014

    authors: Strauss HS,Burgess RR,Record MT Jr

    更新日期:1980-07-22 00:00:00

  • Importance of central alpha-helices of human apolipoprotein A-I in the maturation of high-density lipoproteins.

    abstract::We have studied the role of amphipathic alpha-helices in the ability of apoA-I to promote cholesterol efflux from human skin fibroblasts and activate lecithin:cholesterol acyltransferase (LCAT). Three apoA-I mutants were designed, each by deletion of a pair of predicted adjacent central alpha-helices [Delta(100-143), ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981205b

    authors: Frank PG,N'Guyen D,Franklin V,Neville T,Desforges M,Rassart E,Sparks DL,Marcel YL

    更新日期:1998-09-29 00:00:00

  • Importance of asparagine-61 and asparagine-109 to the angiogenic activity of human angiogenin.

    abstract::Two distinct regions of angiogenin are critical for angiogenic activity: a catalytic site capable of cleaving RNA and a noncatalytic site, encompassing residues 60-68, which may bind to an endothelial cell-surface receptor [Hallahan, T. W., Shapiro, R., & Vallee, B. L. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 2222-222...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00149a036

    authors: Hallahan TW,Shapiro R,Strydom DJ,Vallee BL

    更新日期:1992-09-01 00:00:00

  • In the sense of transcription regulation by G-quadruplexes: asymmetric effects in sense and antisense strands.

    abstract::G-Quadruplexes occupy important regulatory regions in the genome. DNA G-quadruplexes in the promoter regions and RNA quadruplexes in the UTRs (untranslated regions) have been individually studied and variously implicated at different regulatory levels of gene expression. However, the formation of G-quadruplexes in the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401451q

    authors: Agarwal T,Roy S,Kumar S,Chakraborty TK,Maiti S

    更新日期:2014-06-17 00:00:00

  • Site-specific variations in RNA folding thermodynamics visualized by 2-aminopurine fluorescence.

    abstract::The fluorescent base analogue 2-aminopurine (2-AP) is commonly used to study specific conformational and protein binding events involving nucleic acids. Here, combinations of steady-state and time-resolved fluorescence spectroscopy of 2-AP were employed to monitor conformational transitions within a model hairpin RNA ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7011977

    authors: Ballin JD,Bharill S,Fialcowitz-White EJ,Gryczynski I,Gryczynski Z,Wilson GM

    更新日期:2007-12-11 00:00:00

  • Functional reconstitution of the gamma-aminobutyric acid transporter from synaptic vesicles using artificial ion gradients.

    abstract::The gamma-aminobutyric acid transporter of rat brain synaptic vesicles was reconstituted in proteoliposomes, and its activity was studied in response to artificially created membrane potentials or proton gradients. Changes of the membrane potential were monitored using the dyes oxonol VI and 3,3'-diisopropylthiodicarb...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00115a009

    authors: Hell JW,Edelmann L,Hartinger J,Jahn R

    更新日期:1991-12-24 00:00:00

  • Cytoskeletal Drugs Modulate Off-Target Protein Folding Landscapes Inside Cells.

    abstract::The dynamic cytoskeletal network of microtubules and actin filaments can be disassembled by drugs. Cytoskeletal drugs work by perturbing the monomer-polymer equilibrium, thus changing the size and number of macromolecular crowders inside cells. Changes in both crowding and nonspecific surface interactions ("sticking")...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00299

    authors: Davis CM,Gruebele M

    更新日期:2020-07-21 00:00:00

  • Trehalose-containing lipooligosaccharides of Mycobacterium gordonae: presence of a mono-O-methyltetra-O-acyltrehalose "core" and branching in the oligosaccharide backbone.

    abstract::Past evidence has indicated that Mycobacterium gordonae, as isolated from soil and as an occasional opportunistic pathogen, exists as a serocomplex. We now demonstrate that the basis of seroreactivity and diversity is a novel series of alkali-labile, trehalose-containing lipooligosaccharides (LOS). The structures from...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00210a020

    authors: Besra GS,McNeil MR,Khoo KH,Dell A,Morris HR,Brennan PJ

    更新日期:1993-11-30 00:00:00

  • Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).

    abstract::In globular proteins, there are intermolecular hydrogen bonds between protein and water molecules, and between water molecules, which are bound with the proteins, in addition to intramolecular hydrogen bonds. To estimate the contribution of these hydrogen bonds to the conformational stability of a protein, the thermod...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9910169

    authors: Takano K,Yamagata Y,Funahashi J,Hioki Y,Kuramitsu S,Yutani K

    更新日期:1999-09-28 00:00:00

  • Conformational adaptation of apolipoprotein A-I to discretely sized phospholipid complexes.

    abstract::The conformational constraints for apoA-I bound to recombinant phospholipid complexes (rHDL) were attained from a combination of chemical cross-linking and mass spectrometry. Molecular distances were then used to refine models of lipid-bound apoA-I on both 80 and 96 A diameter rHDL particles. To obtain molecular const...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700384t

    authors: Bhat S,Sorci-Thomas MG,Tuladhar R,Samuel MP,Thomas MJ

    更新日期:2007-07-03 00:00:00

  • Conformational basis for substrate recruitment in protein tyrosine phosphatase 10D.

    abstract::The coordinated activity of protein tyrosine phosphatases (PTPs) is crucial for the initiation, modulation, and termination of diverse cellular processes. The catalytic activity of this protein depends on a nucleophilic cysteine at the active site that mediates the hydrolysis of the incoming phosphotyrosine substrate....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201092q

    authors: Madan LL,Gopal B

    更新日期:2011-11-22 00:00:00

  • Probing the "charge cluster mechanism" in amphipathic helical cationic antimicrobial peptides.

    abstract::Clustering of anionic lipids away from zwitterionic ones by cationic antimicrobial agents has recently been established as a mechanism of action of natural small, flexible peptides as well as non-natural synthetic peptide mimics. One of the largest classes of antimicrobial peptides consists of peptides that form catio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100378m

    authors: Epand RF,Maloy WL,Ramamoorthy A,Epand RM

    更新日期:2010-05-18 00:00:00

  • Light-induced high-spin signals from the oxygen evolving center in Ca2+-depleted photosystem II studied by dual mode electron paramagnetic resonance spectroscopy.

    abstract::Illuminating Ca2+-depleted photosystem (PS) II membranes generated two new EPR signals at g = 11 and 15 by perpendicular and parallel polarization modes, respectively. Two turnovers of the oxygen evolving center (OEC) beyond the modified S2' state are required for the appearance of these signals. The formation of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972471c

    authors: Mino H,Kawamori A,Matsukawa T,Ono T

    更新日期:1998-03-03 00:00:00

  • Soluble phosphatidylserine binds to a single identified site in the C2 domain of human factor Va.

    abstract::Factor V(a) (FV(a)) is a cofactor for the serine protease factor X(a) that activates prothrombin to thrombin in the presence of Ca(2+) and a membrane surface. FV(a) is a heterodimer composed of one heavy chain (A1 and A2 domains) and one light chain (A3, C1, and C2 domains). We use fluorescence, circular dichroism, an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010449k

    authors: Srivastava A,Quinn-Allen MA,Kim SW,Kane WH,Lentz BR

    更新日期:2001-07-27 00:00:00

  • pH-dependent fusion of liposomes using titratable polycations.

    abstract::Polylysine promoted extensive membrane mixing of liposomes only if the buffer pH was below the pKa of the lysyl residues. This observation suggested that fusion could be regulated in a physiological pH range if the homopolymer of L-histidine was substituted as fusogen. Microgram quantities of polyhistidine were added ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00322a001

    authors: Uster PS,Deamer DW

    更新日期:1985-01-01 00:00:00

  • Structural dynamics in the plastocyanin-photosystem 1 electron-transfer complex as revealed by mutant studies.

    abstract::A series of plastocyanin mutants have been constructed by site-directed mutagenesis and expressed in Escherichia coli to elucidate the interaction between plastocyanin and photosystem 1 in the photosynthetic electron-transfer chain. Leu-12 has been replaced with alanine, asparagine, glutamate, and lysine, while Tyr-83...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9520141

    authors: Sigfridsson K,Young S,Hansson O

    更新日期:1996-01-30 00:00:00

  • Structural and guanosine triphosphate/diphosphate requirements for transit peptide recognition by the cytosolic domain of the chloroplast outer envelope receptor, Toc34.

    abstract::Toc34 is a transmembrane protein located in the outer envelope membrane of chloroplasts and involved in transit peptide recognition. The cytosolic region of Toc34 reveals 34% alpha-helical and 26% beta-strand structure and is stabilized by intramolecular electrostatic interaction. Toc34 binds both chloroplast preprote...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011361+

    authors: Schleiff E,Soll J,Sveshnikova N,Tien R,Wright S,Dabney-Smith C,Subramanian C,Bruce BD

    更新日期:2002-02-12 00:00:00

  • Inhibition of protein synthesis in vesicular stomatitis virus infected Chinese hamster ovary cells: role of virus mRNA-ribonucleoprotein particle.

    abstract::Although host protein synthesis is preferentially inhibited, there is a steady decline in the ability of Chinese hamster ovary (CHO) cells infected with vesicular stomatitis virus (VSV) to synthesize both host and viral proteins. We previously reported finding an mRNA-ribonucleoprotein particle (mRNP) that contained a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00306a014

    authors: Rosen CA,Siekierka J,Ennis HL,Cohen PS

    更新日期:1984-05-22 00:00:00

  • Metal ion and substrate binding to bovine galactosyltransferase.

    abstract::Bovine milk galactosyltransferase was examined by ESR and NMR proton relaxation measurements to determine the stoichiometry and nature of manganese and UDP-Gal substrate binding. The ESR and NMR data clearly showed the binding of two (Mn(II) per mol of enzyme in the ternary complex (enzyme-manganese-UDP-Gal). The affi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00546a017

    authors: Andree PJ,Berliner LJ

    更新日期:1980-03-04 00:00:00

  • Inhibition of neuronal sodium and potassium ion activated adenosinetriphosphatase by pyrithiamin.

    abstract::Since one of the electrophysiological effects of pyrithiamin, an antimetabolite of thiamin, suggested an interference with sodium pump mechanisms, the effect of pyrithiamin on Na+,K+-ATPase was investigated. We found that whereas preincubation of the antimetabolite with nonneuronal preparations of Na+,K+-ATPase produc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00278a023

    authors: Matsuda T,Cooper JR

    更新日期:1983-04-26 00:00:00

  • Identification of competitive antagonists of the rod photoreceptor cGMP-gated cation channel: beta-phenyl-1,N2-etheno-substituted cGMP analogues as probes of the cGMP-binding site.

    abstract::cGMP is the natural activator of the cyclic nucleotide-gated channel originally isolated from rod photoreceptors but now known to be expressed in a wide variety of neural and non-neural cells. To identify antagonists of cGMP action and to better understand the interaction between cGMP and the channel protein, experime...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961763v

    authors: Wei JY,Cohen ED,Yan YY,Genieser HG,Barnstable CJ

    更新日期:1996-12-24 00:00:00

  • Molecular cloning and developmental expression of the caveolin gene family in the amphibian Xenopus laevis.

    abstract::Caveolae are approximately 50-100 nm invaginations of the plasma membrane thought to form as a result of a local accumulation of cholesterol, sphingolipids, and a unique family of three proteins known as the caveolins: Cav-1, -2, and -3. Here, we report the identification, sequence, and developmental expression of the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020043n

    authors: Razani B,Park DS,Miyanaga Y,Ghatpande A,Cohen J,Wang XB,Scherer PE,Evans T,Lisanti MP

    更新日期:2002-06-25 00:00:00