Estimating predictors for long- or short-term survivors.

Abstract:

:Suppose that the response variable in a well-executed clinical or observational study to evaluate a treatment is the time to a certain event, and a set of baseline covariates or predictors was collected for each study patient. Furthermore, suppose that a significant number of study patients had nontrivial, long-term adverse effects from the treatment. A commonly posed question is how to use these covariates from the study to identify future patients who would (or would not) benefit from the treatment. In this article, we present "point" and "interval" estimates for the set of covariate or predictor vectors associated with a specific patient survival status, e.g., long- (or short-) term survival, in the presence of censoring. These estimates can be easily displayed on a two-dimensional plane, even for the case with high-dimensional covariate vectors. These simple numerical and graphical procedures provide useful information for patient management and/or the design of future studies, which are key issues in pharmacogenomics with genetic markers. The new proposal is illustrated with a data set from a cancer study for treating multiple myeloma.

journal_name

Biometrics

journal_title

Biometrics

authors

Tian L,Wang W,Wei LJ

doi

10.1111/j.0006-341x.2003.00116.x

subject

Has Abstract

pub_date

2003-12-01 00:00:00

pages

1008-15

issue

4

eissn

0006-341X

issn

1541-0420

journal_volume

59

pub_type

杂志文章
  • Two-stage designs for gene-disease association studies with sample size constraints.

    abstract::Gene-disease association studies based on case-control designs may often be used to identify candidate polymorphisms (markers) conferring disease risk. If a large number of markers are studied, genotyping all markers on all samples is inefficient in resource utilization. Here, we propose an alternative two-stage metho...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341X.2004.00207.x

    authors: Satagopan JM,Venkatraman ES,Begg CB

    更新日期:2004-09-01 00:00:00

  • Quantifying and comparing dynamic predictive accuracy of joint models for longitudinal marker and time-to-event in presence of censoring and competing risks.

    abstract::Thanks to the growing interest in personalized medicine, joint modeling of longitudinal marker and time-to-event data has recently started to be used to derive dynamic individual risk predictions. Individual predictions are called dynamic because they are updated when information on the subject's health profile grows ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12232

    authors: Blanche P,Proust-Lima C,Loubère L,Berr C,Dartigues JF,Jacqmin-Gadda H

    更新日期:2015-03-01 00:00:00

  • Bayesian lasso for semiparametric structural equation models.

    abstract::There has been great interest in developing nonlinear structural equation models and associated statistical inference procedures, including estimation and model selection methods. In this paper a general semiparametric structural equation model (SSEM) is developed in which the structural equation is composed of nonpar...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2012.01751.x

    authors: Guo R,Zhu H,Chow SM,Ibrahim JG

    更新日期:2012-06-01 00:00:00

  • Instrumental variable method for time-to-event data using a pseudo-observation approach.

    abstract::Observational studies are often in peril of unmeasured confounding. Instrumental variable analysis is a method for controlling for unmeasured confounding. As yet, theory on instrumental variable analysis of censored time-to-event data is scarce. We propose a pseudo-observation approach to instrumental variable analysi...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12451

    authors: Kjaersgaard MI,Parner ET

    更新日期:2016-06-01 00:00:00

  • A new criterion for confounder selection.

    abstract::We propose a new criterion for confounder selection when the underlying causal structure is unknown and only limited knowledge is available. We assume all covariates being considered are pretreatment variables and that for each covariate it is known (i) whether the covariate is a cause of treatment, and (ii) whether t...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2011.01619.x

    authors: VanderWeele TJ,Shpitser I

    更新日期:2011-12-01 00:00:00

  • Adaptive decision making in a lymphocyte infusion trial.

    abstract::We describe an adaptive Bayesian design for a clinical trial of an experimental treatment for patients with hematologic malignancies who initially received an allogeneic bone marrow transplant but subsequently suffered a disease recurrence. Treatment consists of up to two courses of targeted immunotherapy followed by ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2002.00560.x

    authors: Thall PF,Inoue LY,Martin TG

    更新日期:2002-09-01 00:00:00

  • Estimating the average treatment effect on survival based on observational data and using partly conditional modeling.

    abstract::Treatments are frequently evaluated in terms of their effect on patient survival. In settings where randomization of treatment is not feasible, observational data are employed, necessitating correction for covariate imbalances. Treatments are usually compared using a hazard ratio. Most existing methods which quantify ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12542

    authors: Gong Q,Schaubel DE

    更新日期:2017-03-01 00:00:00

  • Model selection for G-estimation of dynamic treatment regimes.

    abstract::Dynamic treatment regimes (DTRs) aim to formalize personalized medicine by tailoring treatment decisions to individual patient characteristics. G-estimation for DTR identification targets the parameters of a structural nested mean model, known as the blip function, from which the optimal DTR is derived. Despite its po...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.13104

    authors: Wallace MP,Moodie EEM,Stephens DA

    更新日期:2019-12-01 00:00:00

  • Effects of exposure misclassification on regression analyses of epidemiologic follow-up study data.

    abstract::In epidemiologic studies, subjects are often misclassified as to their level of exposure. Ignoring this misclassification error in the analysis introduces bias in the estimates of certain parameters and invalidates many hypothesis tests. For situations in which there is misclassification of exposure in a follow-up stu...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Reade-Christopher SJ,Kupper LL

    更新日期:1991-06-01 00:00:00

  • A multilevel mixed effects varying coefficient model with multilevel predictors and random effects for modeling hospitalization risk in patients on dialysis.

    abstract::For patients on dialysis, hospitalizations remain a major risk factor for mortality and morbidity. We use data from a large national database, United States Renal Data System, to model time-varying effects of hospitalization risk factors as functions of time since initiation of dialysis. To account for the three-level...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.13205

    authors: Li Y,Nguyen DV,Kürüm E,Rhee CM,Chen Y,Kalantar-Zadeh K,Şentürk D

    更新日期:2020-09-01 00:00:00

  • G-estimation and artificial censoring: problems, challenges, and applications.

    abstract::In principle, G-estimation is an attractive approach for dealing with confounding by variables affected by treatment. It has rarely been applied for estimation of the effects of treatment on failure-time outcomes. Part of this is due to artificial censoring, an analytic device which considers some subjects who actuall...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2011.01656.x

    authors: Joffe MM,Yang WP,Feldman H

    更新日期:2012-03-01 00:00:00

  • Functional multiple indicators, multiple causes measurement error models.

    abstract::Objective measures of oxygen consumption and carbon dioxide production by mammals are used to predict their energy expenditure. Since energy expenditure is not directly observable, it can be viewed as a latent construct with multiple physical indirect measures such as respiratory quotient, volumetric oxygen consumptio...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12706

    authors: Tekwe CD,Zoh RS,Bazer FW,Wu G,Carroll RJ

    更新日期:2018-03-01 00:00:00

  • Modeling of time trends and interactions in vital rates using restricted regression splines.

    abstract::For the analysis of time trends in incidence and mortality rates, the age-period-cohort (apc) model has became a widely accepted method. The considered data are arranged in a two-way table by age group and calendar period, which are mostly subdivided into 5- or 10-year intervals. The disadvantage of this approach is t...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Heuer C

    更新日期:1997-03-01 00:00:00

  • Marginal modeling of binary cross-over data.

    abstract::A model specified in terms of linear models for marginal logits and linear models for log-odds ratios is proposed for the analysis of two-period binary cross-over experiments. Hypothesis testing and parameter estimation are facilitated by standard likelihood methodology. Two examples are used to illustrate how the mod...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Becker MP,Balagtas CC

    更新日期:1993-12-01 00:00:00

  • Estimating equations for measures of association between repeated binary responses.

    abstract::Moment-based methods for analyzing repeated binary responses using the marginal odds ratio as a measure of association have been proposed by a number of authors. Carey, Zeger, and Diggle (1993, Biometrika 80, 517-526) have recently described how the marginal odds ratio can be estimated using generalized estimating equ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Lipsitz SR,Fitzmaurice GM

    更新日期:1996-09-01 00:00:00

  • Survival estimation using splines.

    abstract::A nonparametric maximum likelihood procedure is given for estimating the survivor function from right-censored data. It approximates the hazard rate by a simple function such as a spline, with different approximations yielding different estimators. A special case is that proposed by Nelson (1969, Journal of Quality Te...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Whittemore AS,Keller JB

    更新日期:1986-09-01 00:00:00

  • Group sequential tests for bivariate response: interim analyses of clinical trials with both efficacy and safety endpoints.

    abstract::We describe group sequential tests for a bivariate response. The tests are defined in terms of the two response components jointly, rather than through a single summary statistic. Such methods are appropriate when the two responses concern different aspects of a treatment; for example, one might wish to show that a ne...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Jennison C,Turnbull BW

    更新日期:1993-09-01 00:00:00

  • Adjusted regression trend test for a multicenter clinical trial.

    abstract::Studies using a series of increasing doses of a compound, including a zero dose control, are often conducted to study the effect of the compound on the response of interest. For a one-way design, Tukey et al. (1985, Biometrics 41, 295-301) suggested assessing trend by examining the slopes of regression lines under ari...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.1999.00460.x

    authors: Quan H,Capizzi T

    更新日期:1999-06-01 00:00:00

  • Logarithmic transformations in ANOVA.

    abstract::A method is presented for choosing an additive constant c when transforming data x to y = log(x + c). The method preserves Type I error probability and power in ANOVA under the assumption that the x + c for some c are log-normally distributed. The method has advantages similar to those of rank transformations--namely,...

    journal_title:Biometrics

    pub_type: 临床试验,杂志文章

    doi:

    authors: Berry DA

    更新日期:1987-06-01 00:00:00

  • Optimal Bayesian design for patient selection in a clinical study.

    abstract::Bayesian experimental design for a clinical trial involves specifying a utility function that models the purpose of the trial, in this case the selection of patients for a diagnostic test. The best sample of patients is selected by maximizing expected utility. This optimization task poses difficulties due to a high-di...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2008.01156.x

    authors: Buzoianu M,Kadane JB

    更新日期:2009-09-01 00:00:00

  • On the analysis of mixed longitudinal growth data.

    abstract::Mixed longitudinal growth data consists of several observations on a characteristic over a limited age range for each individual in a study. This data is then combined to model growth over the total age range of all individuals in the study. The limited data collected on each individual precludes a subject-specific ap...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Huggins RM,Loesch DZ

    更新日期:1998-06-01 00:00:00

  • Growth curve models of repeated binary response.

    abstract::Experimental designs that include repeated measures of binary response variables over time and under different conditions are common in biology. In such settings, it is often desirable to characterize the response pattern over time. When response variables are continuous, this characterization can be made in terms of ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Stanek EJ 3rd,Diehl SR

    更新日期:1988-12-01 00:00:00

  • Sieve estimation of Cox models with latent structures.

    abstract::This article considers sieve estimation in the Cox model with an unknown regression structure based on right-censored data. We propose a semiparametric pursuit method to simultaneously identify and estimate linear and nonparametric covariate effects based on B-spline expansions through a penalized group selection meth...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12529

    authors: Cao Y,Huang J,Liu Y,Zhao X

    更新日期:2016-12-01 00:00:00

  • Small-sample inference for the comparison of means of log-normal distributions.

    abstract::We propose a likelihood-based test for comparing the means of two or more log-normal distributions, with possibly unequal variances. A modification to the likelihood ratio test is needed when sample sizes are small. The performance of the proposed procedures is compared with the F-ratio test using Monte Carlo simulati...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341X.2004.00199.x

    authors: Gill PS

    更新日期:2004-06-01 00:00:00

  • A Monte Carlo investigation of homogeneity tests of the odds ratio under various sample size configurations.

    abstract::Epidemiologic data for case-control studies are often summarized into K 2 x 2 tables. Given a fixed number of cases and controls, the degree of sparseness in the data depends on the number of strata, K. The effect of increasing stratification on size and power of seven tests of homogeneity of the odds ratio is studied...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Jones MP,O'Gorman TW,Lemke JH,Woolson RF

    更新日期:1989-03-01 00:00:00

  • Sample size determination for testing whether an identified treatment is best.

    abstract::Laska and Meisner (1989, Biometrics 45, 1139-1151) dealt with the problem of testing whether an identified treatment belonging to a set of k + 1 treatments is better than each of the other k treatments. They calculated sample size tables for k = 2 when using multiple t-tests or Wilcoxon-Mann-Whitney tests, both under ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2000.00879.x

    authors: Horn M,Vollandt R,Dunnett CW

    更新日期:2000-09-01 00:00:00

  • Efficient analysis of Weibull survival data from experiments on heterogeneous patient populations.

    abstract::An efficient method is presented for analyses of death rated in one-way or cross-classified experiments where expected survival time for a patient at time of entry on trial is a function of observable covariates. The survival-time distribution used is a Weibull form of Cox's (1972) model. The analysis proceeds in two ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Williams JS

    更新日期:1978-06-01 00:00:00

  • Heterogeneity models of disease susceptibility, with application to diabetic nephropathy.

    abstract::It is not, in general, possible to include all relevant risk factors in a model of survival or disease incidence. This heterogeneity must be accounted for in the interpretation, as it can imply otherwise unexpected results. This is illustrated by diabetic nephropathy, a serious complication experienced by some diabeti...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Hougaard P,Myglegaard P,Borch-Johnsen K

    更新日期:1994-12-01 00:00:00

  • Bayesian experimental design for nonlinear mixed-effects models with application to HIV dynamics.

    abstract::Bayesian experimental design is investigated for Bayesian analysis of nonlinear mixed-effects models. Existence of the posterior risk for parameter estimation is shown. When the same prior distribution is used for both design and inference, existence of the preposterior risk for design is also proven. If the prior dis...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341X.2004.00148.x

    authors: Han C,Chaloner K

    更新日期:2004-03-01 00:00:00

  • First passage times as environmental safety indicators: carboxyhemoglobin from cigarette smoke.

    abstract::The concentration of carbon monoxide in the blood of a cigarette smoker varies in response to the frequency and dose of CO delivered by the cigarettes he smokes and by the rate at which CO washes out of his blood. Moments of first passage times or exit times above a nominal threshold can be calculated using a stochast...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Marcus AH,Czajkowski S Jr

    更新日期:1979-09-01 00:00:00