From consensus sequence to high-affinity ligands: acquisition of signaling protein modulators.

Abstract:

:Protein kinases recognize and bind to specific amino acid sequences on their protein substrates. These sequences can be readily identified using combinatorial peptide libraries. Unfortunately, conventional peptide libraries are not designed to identify subtle structural factors that can dramatically enhance enzyme affinity since the "local" diversity associated with these libraries is limited to the 20 standard amino acids. A parallel synthesis strategy was developed that possesses 2 key attributes: moderate size ( approximately 1000 members each), yet high structural diversity (50-fold greater than that of conventional peptide libraries). Due to their small size, these libraries can be synthesized in parallel, which allows each library member to be individually evaluated, and eliminates the requirement for subsequent structural deconvolution. Furthermore, since these libraries possess a high structural diversity focused within narrow spatial windows on the target protein, small regions of the protein can be challenged with a multitude of functionality containing structural differences that vary from subtle to gross.

journal_name

Pharmacol Ther

authors

Yeh RH,Lee TR,Lawrence DS

doi

10.1016/s0163-7258(02)00187-0

subject

Has Abstract

pub_date

2002-02-01 00:00:00

pages

179-91

issue

2-3

eissn

0163-7258

issn

1879-016X

pii

S0163725802001870

journal_volume

93

pub_type

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