Abstract:
:Random amplified polymorphic DNA (RAPD) fragments were prepared from samples of Calonectris diomedea (Cory's shearwater, Aves) and Haemonchus contortus (Nematoda) DNA by polymerase chain reaction (PCR) using decamers containing two restriction enzyme sites as primers. Six of 19 studied RAPD fragments probably originated from traces of commensal microorganisms. Many rearranged fragments, absent in the original genomic DNA, were synthesized and amplified during the processing of all the DNA samples, indicating that interactions occur within and between strands during the annealing step of PCR. The model of interactions between molecular species during DNA amplification with a single arbitrary oligonucleotide primer was modified to include nested primer annealing and interactions within and between strands. The presence of these artefacts in the final RAPD have a major effect on the interpretation of polymorphism studies.
journal_name
Mol Ecoljournal_title
Molecular ecologyauthors
Rabouam C,Comes AM,Bretagnolle V V,Humbert JF,Periquet G,Bigot Ydoi
10.1046/j.1365-294x.1999.00605.xsubject
Has Abstractpub_date
1999-03-01 00:00:00pages
493-503issue
3eissn
0962-1083issn
1365-294Xjournal_volume
8pub_type
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