Screening for overlapping bacterial artificial chromosome clones by PCR analysis with an arbitrary primer.

Abstract:

:In this article, we used PCR analysis with arbitrary primers (AP-PCR) to screen for overlapping bacterial artificial chromosome (BAC) clones and assembly of contigs. A rice BAC library with three genome equivalents was used to prepare pooled BAC DNA. Twenty-two arbitrary primers were used to survey the pooled BAC DNAs and individual BAC DNAs. Each primer identified 1-10 loci, and the average was 4.4 loci. There were 1-5 overlapping clones in each locus, and the average was 2.5 clones. A total of 245 BAC clones were identified as overlapping by AP-PCR and the identities were confirmed by DNA-DNA hybridization. The 245 BAC clones were then assembled into 80 contigs and 17 single-clone loci. The results indicated that PCR analysis with arbitrary primers is a powerful tool in screening for overlapping BAC clones with high accuracy and efficiency. The use of AP-PCR analysis should speed up the construction of physical maps of the plant and animal genomes, as well as the rice genome.

authors

Xu J,Yang D,Domingo J,Ni J,Huang N

doi

10.1073/pnas.95.10.5661

subject

Has Abstract

pub_date

1998-05-12 00:00:00

pages

5661-6

issue

10

eissn

0027-8424

issn

1091-6490

journal_volume

95

pub_type

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