Marinitenerispora sediminis gen. nov., sp. nov., a member of the family Nocardiopsaceae isolated from marine sediment.

Abstract:

:Three novel actinobacterial strains, designated as TPS16T, TPS81 and TPS83, were isolated from a sample of marine sediment collected from Tioman Island, Malaysia. The strains formed abundant branched substrate mycelia without fragmentation along with production of blue spores and blue diffusible pigment on soybean meal agar. The strains could grow at pH ranging from pH 6 to 12 and in 0-8 % (w/v) NaCl. Cell-wall hydrolysis showed the presence of meso-diaminopimelic acid. The strains were closely related to Marinactinospora thermotolerans SCSIO 00652T (97.60 %) and Marinactinospora endophytica YIM 690053T (96.87 %) based on phylogenetic analysis of 16S rRNA gene sequences. Multilocus sequence analysis including gyrB, recA and rpoB genes further confirmed that strain TPS16T represented a distinct branch within the family Nocardiopsaceae. The predominant menaquinones were MK-11(H2), MK-10(H2), MK-11(H4) and MK-10(H4), while the major fatty acids were found to be iso-C16 : 0, anteiso-C17 : 0, iso-C15 : 0 and C18 : 1ω9c. Genome sequencing revealed genome sizes of approximately 6 Mb and G+C contents of 73.8 mol%. A new genus, Marinitenerispora gen. nov., is proposed within the family Nocardiopsaceae based on polyphasic data and the type species is Marinitenerispora sediminis gen. nov., sp. nov. The type strain is TPS16T (=DSM 46825T=TBRC 5138T).

authors

Ng ZY,Fang BZ,Li WJ,Tan GYA

doi

10.1099/ijsem.0.003587

subject

Has Abstract

pub_date

2019-10-01 00:00:00

pages

3031-3040

issue

10

eissn

1466-5026

issn

1466-5034

journal_volume

69

pub_type

杂志文章
  • Shewanella mangrovi sp. nov., an acetaldehyde-degrading bacterium isolated from mangrove sediment.

    abstract::A taxonomic study was carried out on strain YQH10T, which was isolated from mangrove sediment collected from Zhangzhou, China during the screening of acetaldehyde-degrading bacteria. Cells of strain YQH10T were Gram-stain-negative rods and pale brown-pigmented. Growth was observed at salinities from 0 to 11% and at te...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000313

    authors: Liu Y,Shang XX,Yi ZW,Gu L,Zeng RY

    更新日期:2015-08-01 00:00:00

  • Status of strains that contravene Rules 27 (3) and 30 of the International Code of Nomenclature of Bacteria. Opinion 81.

    abstract::Based on a list of 205 names proposed in original articles in the International Journal of Systematic and Evolutionary Microbiology or cited in Validation Lists from January 2001 that are not in accordance with Rules 27(3) and 30 of the International Code of Nomenclature of Bacteria (the Code), the Judicial Commission...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.2008/005264-0

    authors: Judicial Commission of the International Committee on Systematics of Prokaryotes.

    更新日期:2008-07-01 00:00:00

  • Dactylosporangium siamense sp. nov., isolated from soil.

    abstract::A novel actinomycete strain, designed MW4-36(T), was isolated from tropical forest soil in Nakhon Sawan Province, Thailand. Morphological and chemotaxonomic characteristics of this strain clearly demonstrated that it belongs to the genus Dactylosporangium. The strain formed finger-shaped sporangia on short sporangioph...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.052092-0

    authors: Thawai C,Suriyachadkun C

    更新日期:2013-11-01 00:00:00

  • Streptomyces ciscaucasicus Sveshnikova et al. 1983 is a later subjective synonym of Streptomyces canus Heinemann et al. 1953.

    abstract::Streptomyces canuswas described in 1953 and the name was listed in the Approved List of Bacterial Names in 1980. Three years later, Streptomyces ciscaucasicus was published and the name was subsequently validated in Validation List no. 22 in 1986. On the basis of genome comparison and multilocus sequence analysis of t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002418

    authors: Kämpfer P,Rückert C,Blom J,Goesmann A,Wink J,Kalinowski J,Glaeser SP

    更新日期:2018-01-01 00:00:00

  • Halanaerobium sehlinense sp. nov., an extremely halophilic, fermentative, strictly anaerobic bacterium from sediments of the hypersaline lake Sehline Sebkha.

    abstract::A strictly anaerobic, extremely halophilic, Gram-positive, rod-shaped bacterium was isolated from the hypersaline (>20% NaCl) surface sediments of Sehline Sebkha in Tunisia. The strain, designated 1Sehel(T), was strictly halophilic and proliferated at NaCl concentrations of between 5% and 30% (saturation), with optima...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.040139-0

    authors: Abdeljabbar H,Cayol JL,Ben Hania W,Boudabous A,Sadfi N,Fardeau ML

    更新日期:2013-06-01 00:00:00

  • Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes.

    abstract::Taxonomic studies were performed on seven strains isolated from microbial mats in Antarctic lakes of the McMurdo Dry Valleys. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these strains are related to the genus Flavobacterium; sequence similarity values with their nearest phylogenetic neighbour...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.03056-0

    authors: Van Trappen S,Vandecandelaere I,Mergaert J,Swings J

    更新日期:2005-03-01 00:00:00

  • 'Candidatus Phytoplasma cirsii', a novel taxon from creeping thistle [Cirsium arvense (L.) Scop].

    abstract::Creeping thistle [Cirsium arvense (L.) Scop.] and dahlia (Dahlia sp.) plants showing typical symptoms of phytoplasma infection including yellowing, stunting, inflorescence and proliferation, were sampled; the presence of phytoplasma was confirmed by standard PCR using universal primers. RFLP analysis allowed classific...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000937

    authors: Šafárˇová D,Zemánek T,Válová P,Navrátil M

    更新日期:2016-04-01 00:00:00

  • Streptococcus halichoeri sp. nov., isolated from grey seals (Halichoerus grypus).

    abstract::Phenotypic and phylogenetic studies were performed on six unidentified, Gram-positive, catalase-negative, chain-forming Streptococcus-like organisms recovered from grey seals. Biochemically the six strains were highly related to each other, but they did not appear to correspond to any recognized species of the genus S...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63082-0

    authors: Lawson PA,Foster G,Falsen E,Davison N,Collins MD

    更新日期:2004-09-01 00:00:00

  • Paenibacillus paeoniae sp. nov., a novel endophytic bacterium isolated from leaf of Paeonia lactiflora Pall.

    abstract::A Gram-stain-positive, aerobic, rod-shaped, endospore-forming bacterium, designated strain M4BSY-1T, was originally isolated from a surface-sterilized leaf of Paeonia lactiflora Pall. in Guizhou, China. The bacterium was characterized by a polyphasic approach to determine its taxonomic position. 16S rRNA gene sequence...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003042

    authors: Yan XR,Tuo L

    更新日期:2018-11-01 00:00:00

  • Bacillus marmarensis sp. nov., an alkaliphilic, protease-producing bacterium isolated from mushroom compost.

    abstract::A Gram-stain-positive, obligately alkaliphilic bacterium designated strain GMBE 72(T) was isolated from mushroom compost from Yalova, located in the Marmara region of Turkey. Cells were aerobic, straight rods and they formed subterminal to terminal ellipsoidal endospores. The isolate was catalase-positive, oxidase-neg...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.012369-0

    authors: Denizci AA,Kazan D,Erarslan A

    更新日期:2010-07-01 00:00:00

  • Clostridium neonatale sp. nov. linked to necrotizing enterocolitis in neonates and a clarification of species assignable to the genus Clostridium (Prazmowski 1880) emend. Lawson and Rainey 2016.

    abstract::A description of an outbreak of necrotizing enterocolitis among neonates, linked to the putative novel species Clostridium neonatale and assignable to the genus Clostridium, was previously reported in brief but that name had never been validly published (Alfa et al. Clin Inf Dis 2002;35:S101-S105). Features of this ta...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002827

    authors: Bernard K,Burdz T,Wiebe D,Alfa M,Bernier AM

    更新日期:2018-08-01 00:00:00

  • Nocardia exalbida sp. nov., isolated from Japanese patients with nocardiosis.

    abstract::Two bacterial strains isolated from different hospitals in Japan were subjected to a polyphasic analysis. Strains IFM 0803(T) and IFM 10383 were found to have morphological, biochemical, physiological and chemotaxonomic properties consistent with their classification in the genus Nocardia. Strains IFM 0803(T) and IFM ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63850-0

    authors: Iida S,Kageyama A,Yazawa K,Uchiyama N,Toyohara T,Chohnabayashi N,Suzuki SI,Nomura F,Kroppenstedt RM,Mikami Y

    更新日期:2006-06-01 00:00:00

  • Morphological and molecular characterization of Orbilia pseudopolybrocha and O. tonghaiensis, two new species of Orbiliaceae from China.

    abstract::This study examined over 20 fungal specimens of the Orbiliaceae (Orbiliomycetes) from different regions in China. Our analyses based on morphological traits and the ITS rDNA sequences revealed two new Orbilia species with drechslerella-like asexual morphs. These new species are able to trap nematodes with constricting...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004088

    authors: Zhang Y,Qiao M,Baral HO,Xu J,Zhang KQ,Yu ZF

    更新日期:2020-04-01 00:00:00

  • 'Candidatus Phytoplasma luffae', a novel taxon associated with witches' broom disease of loofah, Luffa aegyptica Mill.

    abstract::The phytoplasma associated with witches' broom disease of loofah [Luffa aegyptica Mill., syn. Luffa cylindrica (L.) M.J. Roem.] in Taiwan was classified in group 16SrVIII, subgroup A (16SrVIII-A), based on results from actual and in silico RFLP analysis of 16S rRNA gene sequences. Nucleotide sequencing of PCR-amplifie...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001980

    authors: Davis RE,Zhao Y,Wei W,Dally EL,Lee IM

    更新日期:2017-08-01 00:00:00

  • Mobilicoccus caccae sp. nov., isolated from the faeces of the primate Rhinopithecus roxellanae.

    abstract::A novel actinobacterium, designated YIM 101593T, was isolated from the faeces of a primate (Rhinopithecus roxellanae) living in Yunnan Wild Animal Park in Yunnan province, south-west China. The isolate was Gram-stain-positive, facultatively anaerobic, coccus-shaped, oxidase-negative and motile. The cell wall contained...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001939

    authors: Chen X,Li QY,Li GD,Xu FJ,Jiang CL,Han L,Huang XS,Jiang Y

    更新日期:2017-07-01 00:00:00

  • Enterococcus saccharolyticus subsp. taiwanensis subsp. nov., isolated from broccoli.

    abstract::A coccal strain isolated from fresh broccoli was initially identified as Enterococcus saccharolyticus; however, molecular identification and phenotypic traits did not support this identification. DNA-DNA hybridization with the type strain of E. saccharolyticus (76.4 % relatedness), DNA G+C content (35.7 mol%), phyloge...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.052761-0

    authors: Chen YS,Lin YH,Pan SF,Ji SH,Chang YC,Yu CR,Liou MS,Wu HC,Otoguro M,Yanagida F,Liao CC,Chiu CM,Huang BQ

    更新日期:2013-12-01 00:00:00

  • Candida olivae sp. nov., a novel yeast species from 'Greek-style' black olive fermentation.

    abstract::Two yeast strains (FMCC Y-1(T) and FMCC Y-2) were recovered during a survey of the yeast biota associated with fermenting black olives, collected from an olive tree (Olea europaea L. cv. 'Conservolea') orchard in Central Greece. Phylogenetic analysis based on rRNA gene sequences (18S, 26S, and 5.8S-ITS) indicated that...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.012955-0

    authors: Nisiotou AA,Panagou EZ,Nychas GE

    更新日期:2010-05-01 00:00:00

  • Ekhidna lutea gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from the South East Pacific Ocean.

    abstract::A novel aerobic, heterotrophic bacterium, designated BiosLi39(T), was isolated from the South East Pacific Ocean. Cells were Gram-negative gliding rods forming yellow colonies on marine agar. The isolate was oxidase-, catalase- and alkaline phosphatase-positive and β-galactosidase-negative. Strain BiosLi39(T) grew at ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.018804-0

    authors: Alain K,Tindall BJ,Catala P,Intertaglia L,Lebaron P

    更新日期:2010-12-01 00:00:00

  • Vibrio ouci sp. nov. and Vibrio aquaticus sp. nov., two marine bacteria isolated from the East China Sea.

    abstract::Two Gram-stain-negative, catalase- and oxidase-positive, facultative anaerobic and rod-shaped motile bacteria, designated strains BEI176T and BEI207T, were isolated from seawater collected in the East China Sea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strains BEI176T and BEI207T belonged to ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003732

    authors: Li B,Li Y,Liu R,Xue C,Zhu X,Tian X,Wang X,Liang J,Zheng Y,Zhang XH

    更新日期:2020-01-01 00:00:00

  • Mucilaginibacter roseus sp. nov., isolated from a freshwater river.

    abstract::A bacterial strain, designated TTM-1T, was isolated from a water sample taken from the Caohu River in Taiwan and characterized in a taxonomic study using a polyphasic approach. Cells of strain TTM-1T were Gram-stain-negative, aerobic, non-motile, rod-shaped and covered by large capsules, and formed pink-coloured colon...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000838

    authors: Chen WM,Chen YL,Sheu SY

    更新日期:2016-03-01 00:00:00

  • Mesorhizobium waimense sp. nov. isolated from Sophora longicarinata root nodules and Mesorhizobium cantuariense sp. nov. isolated from Sophora microphylla root nodules.

    abstract::In total 14 strains of Gram-stain-negative, rod-shaped bacteria were isolated from Sophora longicarinata and Sophora microphylla root nodules and authenticated as rhizobia on these hosts. Based on the 16S rRNA gene phylogeny, they were shown to belong to the genus Mesorhizobium, and the strains from S. longicarinata w...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000430

    authors: De Meyer SE,Wee Tan H,Heenan PB,Andrews M,Willems A

    更新日期:2015-10-01 00:00:00

  • Mycoplasma iguanae sp. nov., from a green iguana (Iguana iguana) with vertebral disease.

    abstract::Strain 2327T, first cultured from vertebral abscesses of green iguanas (Iguana iguana) collected in Florida, USA, was readily distinguished from all previously described mollicutes by 16S rRNA gene sequence comparisons. Strain 2327T lacks a cell wall, ferments glucose, does not hydrolyse arginine, aesculin or urea and...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63852-0

    authors: Brown DR,Demcovitz DL,Plourdé DR,Potter SM,Hunt ME,Jones RD,Rotstein DS

    更新日期:2006-04-01 00:00:00

  • Cautionary tale of using 16S rRNA gene sequence similarity values in identification of human-associated bacterial species.

    abstract::Modern bacterial taxonomy is based on a polyphasic approach that combines phenotypic and genotypic characteristics, including 16S rRNA sequence similarity. However, the 95 % (for genus) and 98.7 % (for species) sequence similarity thresholds that are currently recommended to classify bacterial isolates were defined by...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000161

    authors: Rossi-Tamisier M,Benamar S,Raoult D,Fournier PE

    更新日期:2015-06-01 00:00:00

  • Actinoplanes siamensis sp. nov., isolated from soil.

    abstract::A Gram-positive filamentous bacterial strain that developed large campanulate sporangia at the ends of sporangiophores on substrate mycelium was isolated from bamboo forest soil in Thailand. According to the results of a polyphasic taxonomic study, our isolate had typical characteristics of members of the genus Actino...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.048017-0

    authors: Suriyachadkun C,Ngaemthao W,Chunhametha S,Thawai C,Sanglier JJ

    更新日期:2013-08-01 00:00:00

  • Chitinophaga qingshengii sp. nov., isolated from weathered rock surface.

    abstract::A novel mineral-weathering bacterium was isolated from weathered rock (potassic trachyte) surfaces collected from Nanjing (Jiangsu, PR China). Cells of strain JN246(T) were Gram-stain-negative, rod-shaped and non-motile. Strain JN246(T) was aerobic, catalase- and oxidase-positive, and grew optimally at 28 °C and pH 7....

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.070516-0

    authors: Cheng C,Wang Q,He LY,Huang Z,Sheng XF

    更新日期:2015-01-01 00:00:00

  • Erythrobacter citreus sp. nov., a yellow-pigmented bacterium that lacks bacteriochlorophyll a, isolated from the western Mediterranean Sea.

    abstract::Two facultatively oligotrophic, intensely yellow-pigmented bacterial strains, RE35F/1T and RE10F/45, have been previously isolated from the western Mediterranean Sea (Bay of Calvi, Corsica, France) by 0.2 microm membrane filtration. The organisms were gram-negative, catalase- and oxidase-positive, strictly aerobic, ro...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-5-1655

    authors: Denner EBM,Vybiral D,Koblízek M,Kämpfer P,Busse HJ,Velimirov B

    更新日期:2002-09-01 00:00:00

  • Altererythrobacter flavus sp. nov., isolated from mangrove sediment.

    abstract::A Gram-negative, aerobic, non-motile, rod-shaped bacterium, designated MS1-4T, was isolated from mangrove sediment of the Jiulong River Estuary, Fujian Province, China. The isolate formed yellow colonies on ZB 2216E agar. Optimal growth was observed at pH 6.0, at 34 °C and in the presence of 4 % (w/v) NaCl. Strain MS1...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002822

    authors: Ma H,Ren H,Huang L,Luo Y

    更新日期:2018-07-01 00:00:00

  • Characterization of the marine propionate-degrading, sulfate-reducing bacterium Desulfofaba fastidiosa sp. nov. and reclassification of Desulfomusa hansenii as Desulfofaba hansenii comb. nov.

    abstract::A rod-shaped, slightly curved sulfate reducer, designated strain P2(T), was isolated from the sulfate-methane transition zone of a marine sediment. Cells were motile by means of a single polar flagellum. The strain reduced sulfate, thiosulfate and sulfite to sulfide and used propionate, lactate and 1-propanol as elect...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02820-0

    authors: Abildgaard L,Ramsing NB,Finster K

    更新日期:2004-03-01 00:00:00

  • Rubrobacter indicoceani sp. nov., a new marine actinobacterium isolated from Indian Ocean sediment.

    abstract::A novel mesophilic marine actinobacterial strain, designated as SCSIO 08198T, was isolated from a deep-sea sediment sample collected from the Indian Ocean. The strain was Gram-stain-positive, rod-shaped and salmon pink in colour. Good growth occurred on marine agar with 1-5 % (w/v) NaCl and incubation at 28 °C for mor...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003018

    authors: Chen RW,Wang KX,Wang FZ,He YQ,Long LJ,Tian XP

    更新日期:2018-11-01 00:00:00

  • Tenacibaculum jejuense sp. nov., isolated from coastal seawater.

    abstract::A Gram-staining-negative, strictly aerobic and rod-shaped bacterium, designated strain CNURIC013(T), was isolated from seawater collected on the coast of Jeju Island, South Korea. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain CNURIC013(T) belonged to the genus Tenacibaculum, within the fami...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.030114-0

    authors: Oh YS,Kahng HY,Lee DH,Lee SB

    更新日期:2012-02-01 00:00:00