Cautionary tale of using 16S rRNA gene sequence similarity values in identification of human-associated bacterial species.

abstract：:A Gram-negative, rod-shaped, non-spore-forming bacterium (TR6-01T) was isolated from compost near Daejeon city in South Korea. On the basis of 16S rRNA gene sequence similarity, strain TR6-01T was shown to belong to the class Gammaproteobacteria, related to Stenotrophomonas acidaminiphila (97.1 %) and Stenotrophomonas...

journal_title：International journal of systematic and evolutionary microbiology

authors： Yang HC,Im WT,Kang MS,Shin DY,Lee ST

更新日期：2006-01-01 00:00:00

abstract：:A moderately halophilic bacterium, designated strain SP30T, was isolated from a solar saltern located in Santa Pola, Alicante, on the East coast of Spain. It was a Gram-stain-negative, strictly aerobic bacterium, able to grow in 7.5-25 % (w/v) NaCl and optimally in 12.5 % (w/v) NaCl. Phylogenetic analyses, based on 16...

journal_title：International journal of systematic and evolutionary microbiology

authors： León MJ,Aldeguer-Riquelme B,Antón J,Sánchez-Porro C,Ventosa A

更新日期：2017-08-01 00:00:00

abstract：:Two gram-negative, aerobic, non-pigmented, non-motile, rod-shaped bacteria, strains KMM 9015 and KMM 9018(T), were isolated from a sample of shallow sediment collected from the Sea of Japan. An analysis of the nearly complete 16S rRNA gene sequences showed that the isolates were very close to each other phylogenetical...

journal_title：International journal of systematic and evolutionary microbiology

authors： Romanenko LA,Tanaka N,Svetashev VI,Mikhailov VV

更新日期：2011-07-01 00:00:00

abstract：:A novel obligately anaerobic, alkalithermophilic, chemo-organotrophic bacterium was isolated from a small and very shallow geothermally heated pool at Pushino (Kamchatka, Far East Russia). The bacterium, designated strain JW/VK-KS5Y(T), was a Gram staining negative, Gram type positive rod. The cells were sometimes bra...

journal_title：International journal of systematic and evolutionary microbiology

authors： Kevbrin V,Boltyanskaya Y,Garnova E,Wiegel J

更新日期：2008-06-01 00:00:00

abstract：:Twelve strains isolated from the posterior fornix fluid of the human vagina were identified as Lactobacillus johnsonii, Lactobacillus acidophilus, Lactobacillus gallinarum and Lactobacillus crispatus based on numerical analyses of total soluble cell protein profiles and randomly amplified polymorphic DNA (RAPD)-PCR ba...

journal_title：International journal of systematic and evolutionary microbiology

authors： Dicks LM,Silvester M,Lawson PA,Collins MD

更新日期：2000-05-01 00:00:00

abstract：:A pure culture of an actinobacterium previously described as 'Candidatus Rhodoluna lacicola' strain MWH-Ta8 was established and deposited in two public culture collections. Strain MWH-Ta8(T) represents a free-living planktonic freshwater bacterium obtained from hypertrophic Meiliang Bay, Lake Taihu, PR China. The stra...

journal_title：International journal of systematic and evolutionary microbiology

authors： Hahn MW,Schmidt J,Taipale SJ,Doolittle WF,Koll U

更新日期：2014-09-01 00:00:00

abstract：:A novel Gram-reaction-positive, non-motile and facultatively anaerobic bacterium, designated strain S01T, was isolated from a nutrient agar plate kept on a laboratory clean bench at Guangdong Institute of Microbiology, PR China, which was contaminated from an unknown source. Strain S01T was found to be catalase-positi...

journal_title：International journal of systematic and evolutionary microbiology

authors： Li YX,Yang SZ,Feng GD,Wang YH,Zhu HH

更新日期：2016-08-01 00:00:00

abstract：:Two strains representing a novel species of the genus Saturnispora were isolated from rotting wood samples collected in an Atlantic Rainforest site in Brazil. Analyses of the sequences of the D1/D2 domains of the rRNA gene showed that this novel species belongs to a subclade in the Saturnispora clade formed by Saturni...

journal_title：International journal of systematic and evolutionary microbiology

authors： Morais CG,Lara CA,Borelli BM,Cadete RM,Moreira JD,Lachance MA,Rosa CA

更新日期：2016-10-01 00:00:00

abstract：:An obligately anaerobic and equol-producing bacterium, designated strain do03T, was isolated from the caecal content of a rat. Cells were Gram-positive, non-spore-forming rods. The results from a phylogenetic analysis based on 16S rRNA gene sequences showed that strain do03T formed a separate line of descent in the ph...

journal_title：International journal of systematic and evolutionary microbiology

authors： Minamida K,Ota K,Nishimukai M,Tanaka M,Abe A,Sone T,Tomita F,Hara H,Asano K

更新日期：2008-05-01 00:00:00

abstract：:The taxonomic positions of two gamma- and UV-ray-resistant strains isolated from radiation-polluted soil in north-west China were determined in a polyphasic study. The organisms, designated R12(T) and R13(T), were Gram-stain-positive, non-spore-forming cocci, which contained MK-8 as the major respiratory quinone and C...

journal_title：International journal of systematic and evolutionary microbiology

authors： Wang W,Mao J,Zhang Z,Tang Q,Xie Y,Zhu J,Zhang L,Liu Z,Shi Y,Goodfellow M

更新日期：2010-09-01 00:00:00

abstract：:A novel strain, NJ-8(T), was isolated from sediment of the eutrophic Taihu Lake (China) and was subjected to a taxonomic study by using a polyphasic approach. The novel strain was aerobic and formed orange-pigmented colonies on R2A agar. Cells were Gram-negative single rods that were motile by means of gliding. Phylog...

journal_title：International journal of systematic and evolutionary microbiology

authors： Qu JH,Yuan HL,Yang JS,Li HF,Chen N

更新日期：2009-05-01 00:00:00

abstract：:Strain UST040317-058(T), comprising non-pigmented, rod-shaped, facultatively anaerobic, Gram-negative cells that are motile by means of single polar flagella, was isolated from the surface of a marine sponge (Ircinia dendroides) collected from the Mediterranean Sea. Comparative 16S rRNA gene sequence-based phylogeneti...

journal_title：International journal of systematic and evolutionary microbiology

authors： Lee OO,Lau SCK,Tsoi MMY,Li X,Plakhotnikova I,Dobretsov S,Wu MCS,Wong PK,Weinbauer M,Qian PY

更新日期：2006-12-01 00:00:00

abstract：:Strain DCY 63(T), isolated from the rhizosphere of ginseng, was a Gram-reaction-negative, strictly aerobic, non-motile, catalase- and oxidase-positive rod. 16S rRNA gene sequence analysis revealed that strain DCY 63(T) belonged to the genus Chryseobacterium and was closely related to Chryseobacterium indoltheticum LMG...

journal_title：International journal of systematic and evolutionary microbiology

authors： Nguyen NL,Kim YJ,Hoang VA,Yang DC

更新日期：2013-08-01 00:00:00

abstract：:Strain 7SM29T, an aerobic marine gammaproteobacterium isolated from seawater from Castellón, Spain, was characterized by classical phenotyping, chemotaxonomy and 16S rRNA gene sequence analysis. Strain 7SM29T was found to be closely related to strains in the genus Haliea and to Congregibacter litoralis KT71T, with whi...

journal_title：International journal of systematic and evolutionary microbiology

authors： Lucena T,Pascual J,Garay E,Arahal DR,Macián MC,Pujalte MJ

更新日期：2010-08-01 00:00:00

abstract：:The phylogenetic relationships between ciliate species in the suborder Tetrahymenina, order Hymenostomata, was investigated by comparing their telomerase RNA (TER) sequences. This relatively small RNA is an integral part of telomerase, the ribonucleoprotein enzyme that catalyses the synthesis of telomeric DNA. Despite...

journal_title：International journal of systematic and evolutionary microbiology

authors： Ye AJ,Romero DP

更新日期：2002-11-01 00:00:00

abstract：:A facultatively anaerobic, Gram-stain-positive, catalase-negative, rod-shaped lactic acid bacterium, designated SG816T, was isolated from small intestine of a swine. Optimal growth occurred at 37 °C and pH 7.0. Furthermore, growth occurred in NaCl up to 0.5 % (w/v) but not at levels of salinity higher than 1 %. Compar...

journal_title：International journal of systematic and evolutionary microbiology

authors： Kim JS,Choe H,Kim KM,Lee YR,Rhee MS,Park DS

更新日期：2018-10-01 00:00:00

abstract：:A yeast, strain NCYC 2938T, was isolated from contaminated industrial material. This material was involved in a cascade continuous process for oxidizing sorbitol (D-glucitol) to L-sorbose. The isolate is similar, although not identical, to Candida geochares and Candida magnoliae in its physiological characteristics. S...

journal_title：International journal of systematic and evolutionary microbiology

authors： James SA,Bond CJ,Roberts IN

更新日期：2001-05-01 00:00:00

abstract：:Various bacterial species in the genus Pasteuria have great potential as biocontrol agents against plant-parasitic nematodes, although study of this important genus is hampered by the current inability to cultivate Pasteuria species outside their host. To aid in the study of this genus, an extensive 16S rRNA gene sequ...

journal_title：International journal of systematic and evolutionary microbiology

authors： Duan YP,Castro HF,Hewlett TE,White JH,Ogram AV

更新日期：2003-01-01 00:00:00

abstract：:Data currently available on members of the genera Haloterrigena and Natrinema suggest that some strains of the species Haloterrigena turkmenica that have been shown by DNA-DNA hybridization to belong to this species show a high degree of 16S rDNA sequence similarity to members of the genus NATRINEMA: However, closer e...

journal_title：International journal of systematic and evolutionary microbiology

authors： Tindall BJ

更新日期：2003-09-01 00:00:00

abstract：:Following the exposure of a biofilm sample from a hydrothermal spring cave (Gellért Hill, Budapest, Hungary) to gamma radiation, a strain designated FeSTC15-38T was isolated and studied by polyphasic taxonomic methods. The spherical-shaped cells stained Gram-negative, and were aerobic and non-motile. The pH range for ...

journal_title：International journal of systematic and evolutionary microbiology

authors： Makk J,Tóth EM,Anda D,Pál S,Schumann P,Kovács AL,Mádl-Szőnyi J,Márialigeti K,Borsodi AK

更新日期：2016-12-01 00:00:00

abstract：:Strains 10-46(T) and 10-106 were isolated from a water reservoir in Korea. They were Gram-negative, non-motile, non-spore-forming rods, produced yellow-pigmented colonies on nutrient agar, contained MK-6 as the predominant menaquinone and 15 : 0 iso and 17 : 0 iso 3-OH as the major fatty acids and had polar lipid prof...

journal_title：International journal of systematic and evolutionary microbiology

authors： Kim KK,Lee KC,Oh HM,Lee JS

更新日期：2008-03-01 00:00:00

abstract：:A novel endophytic actinomycete, strain GMKU 931(T), was isolated from the root of a wattle tree, Acacia auriculiformis A. Cunn. ex Benth., collected at Kasetsart University, Bangkok, Thailand. Strain GMKU 931(T) produced short spiral chains of smooth-surfaced spores on the aerial mycelium. Lysine and meso-diaminopime...

journal_title：International journal of systematic and evolutionary microbiology

authors： Thamchaipenet A,Indananda C,Bunyoo C,Duangmal K,Matsumoto A,Takahashi Y

更新日期：2010-03-01 00:00:00

abstract：:A Gram-staining-negative bacterium, strain XCD-X12(T), was isolated from Xiaochaidan Lake, a salt lake (salinity 9.9%, w/w) in Qaidam basin, Qinghai Province, China. Its taxonomic position was determined by using a polyphasic approach. Cells of strain XCD-X12(T) were non-spore-forming rods, 0.4-0.7 μm wide, 2.1-3.2 μm...

journal_title：International journal of systematic and evolutionary microbiology

authors： Zhong ZP,Liu Y,Liu HC,Wang F,Zhou YG,Liu ZP

更新日期：2015-09-01 00:00:00

abstract：:A novel Gram-staining-negative, strictly aerobic bacterium, designated BS14(T), was isolated from a marine tidal flat of the South Sea in Korea. Colonies were opaque, white, smooth and circular on marine agar. Cells were moderately halophilic, non-motile rods showing catalase- and oxidase-positive reactions. Growth of...

journal_title：International journal of systematic and evolutionary microbiology

authors： Math RK,Jin HM,Jeong SH,Jeon CO

更新日期：2013-08-01 00:00:00

abstract：:A novel Gram-stain-negative, aerobic, oxidase-positive, motile, dimorphic rod bacterium, with a polar flagellum or a polar prostheca, designated as strain WD6-1T, was isolated from a sediment sample collected from a marine solar saltern located in Weihai, PR China. Growth of strain WD6-1T was observed at 15-45 °C (opt...

journal_title：International journal of systematic and evolutionary microbiology

authors： Zhai TJ,Liu BT,Zhu RQ,Chen GJ,Du ZJ

更新日期：2019-08-01 00:00:00

abstract：:A moderately thermophilic bacterial strain (HT4(T)) isolated from a hot spring sediment was characterized phenotypically and phylogenetically. Cells were Gram-negative, aerobic, non-sporulating, rod-shaped and motile by means of a single polar flagellum. Both oxidase and catalase activities were positive. Heterotrophi...

journal_title：International journal of systematic and evolutionary microbiology

authors： Panday D,Das SK

更新日期：2010-04-01 00:00:00

abstract：:A novel bacterial strain, designated DCY94(T), was isolated from forest soil cultivated with ginseng in Vietnam. The strain was Gram-reaction-negative, facultatively anaerobic, non-motile, rod-shaped and catalase- and oxidase-positive. 16S rRNA gene sequence analysis demonstrated that strain DCY94(T) was closely relat...

journal_title：International journal of systematic and evolutionary microbiology

authors： Nguyen NL,Kim YJ,Hoang VA,Tran BT,Pham HS,Yang DC

更新日期：2015-05-01 00:00:00

abstract：:Five strains of simmondsin-degrading, lactic-acid-producing bacteria were isolated from fermented jojoba meal. These isolates were facultatively anaerobic, gram-positive, non-motile, non-spore-forming, homofermentative, rod-shaped organisms. They grew singly and in short chains, produced lactic acid but no gas from gl...

journal_title：International journal of systematic and evolutionary microbiology

authors： Swezey JL,Nakamura LK,Abbott TP,Peterson RE

更新日期：2000-09-01 00:00:00

abstract：:A novel actinobacterium, designated strain SST-39T, was isolated from a marine sediment sample collected in Jeju, Republic of Korea. Cells were facultatively anaerobic, Gram-positive, non-endospore-forming, non-motile rods. Colonies were circular, slightly convex, opaque and brilliant yellow. The cell-wall peptidoglyc...

journal_title：International journal of systematic and evolutionary microbiology

authors： Lee DW,Lee SD

更新日期：2008-04-01 00:00:00

abstract：:A Gram-positive, non-endospore-forming bacterium (GW41-1564(T)) was isolated from soil. Comparison of 16S rRNA gene sequences showed that strain GW41-1564(T) is a member of the genus Streptomyces, exhibiting highest similarities with Streptomyces hainanensis YIM 47672(T) (97.8 %) and Streptomyces cacaoi subsp. cacaoi ...

journal_title：International journal of systematic and evolutionary microbiology

authors： Kämpfer P,Huber B,Buczolits S,Thummes K,Grün-Wollny I,Busse HJ

更新日期：2008-11-01 00:00:00