Deciphering phenotypic variance in different models of DNA-PKcs deficiency.

Abstract:

:DNA-PKcs deficiency has been studied in numerous animal models and cell culture systems. In previous studies of kinase inactivating mutations in cell culture systems, ablation of DNA-PK's catalytic activity results in a cell phenotype that is virtually indistinguishable from that ascribed to complete loss of the enzyme. However, a recent compelling study demonstrates a remarkably more severe phenotype in mice harboring a targeted disruption of DNA-PK's ATP binding site as compared to DNA-PKcs deficient mice. Here we investigate the mechanism for these divergent results. We find that kinase inactivating DNA-PKcs mutants markedly radiosensitize immortalized DNA-PKcs deficient cells, but have no substantial effects on transformed DNA-PKcs deficient cells. Since the non-homologous end joining mechanism likely functions similarly in all of these cell strains, it seems unlikely that kinase inactive DNA-PK could impair the end joining mechanism in some cell types, but not in others. In fact, we observed no significant differences in either episomal or chromosomal end joining assays in cells expressing kinase inactivated DNA-PKcs versus no DNA-PKcs. Several potential explanations could explain these data including a non-catalytic role for DNA-PKcs in promoting cell death, or alteration of gene expression by loss of DNA-PKcs as opposed to inhibition of its catalytic activity. Finally, controversy exists as to whether DNA-PKcs autophosphorylates or is the target of other PIKKs; we present data demonstrating that DNA-PK primarily autophosphorylates.

journal_name

DNA Repair (Amst)

journal_title

DNA repair

authors

Neal JA,Meek K

doi

10.1016/j.dnarep.2018.10.004

subject

Has Abstract

pub_date

2019-01-01 00:00:00

pages

7-16

eissn

1568-7864

issn

1568-7856

pii

S1568-7864(18)30147-2

journal_volume

73

pub_type

杂志文章
  • APE1: A skilled nucleic acid surgeon.

    abstract::Before a deleterious DNA lesion can be replaced with its undamaged counterpart, the lesion must first be removed from the genome. This process of removing and replacing DNA lesions is accomplished by the careful coordination of several protein factors during DNA repair. One such factor is the multifunctional enzyme hu...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2018.08.012

    authors: Whitaker AM,Freudenthal BD

    更新日期:2018-11-01 00:00:00

  • Human OGG1 activity in nucleosomes is facilitated by transient unwrapping of DNA and is influenced by the local histone environment.

    abstract::If unrepaired, damage to genomic DNA can cause mutations and/or be cytotoxic. Single base lesions are repaired via the base excision repair (BER) pathway. The first step in BER is the recognition and removal of the nucleobase lesion by a glycosylase enzyme. For example, human oxoguanine glycosylase 1 (hOGG1) is respon...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2017.08.010

    authors: Bilotti K,Kennedy EE,Li C,Delaney S

    更新日期:2017-11-01 00:00:00

  • Function of Rad17/Mec3/Ddc1 and its partial complexes in the DNA damage checkpoint.

    abstract::The Saccharomyces cerevisiae heterotrimeric checkpoint clamp consisting of the Rad17, Mec3, and Ddc1 subunits (Rad17/3/1, the 9-1-1 complex in humans) is an early response factor to DNA damage in a signal transduction pathway leading to the activation of the checkpoint system and eventually to cell cycle arrest. These...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2005.07.008

    authors: Majka J,Burgers PM

    更新日期:2005-09-28 00:00:00

  • Defect of Fe-S cluster binding by DNA polymerase δ in yeast suppresses UV-induced mutagenesis, but enhances DNA polymerase ζ - dependent spontaneous mutagenesis.

    abstract::Eukaryotic genomes are duplicated by a complex machinery, utilizing high fidelity replicative B-family DNA polymerases (pols) α, δ and ε. Specialized error-prone pol ζ, the fourth B-family member, is recruited when DNA synthesis by the accurate trio is impeded by replication stress or DNA damage. The damage tolerance ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2016.11.004

    authors: Stepchenkova EI,Tarakhovskaya ER,Siebler HM,Pavlov YI

    更新日期:2017-01-01 00:00:00

  • Mutant cells defective in DNA repair pathways provide a sensitive high-throughput assay for genotoxicity.

    abstract::Chemicals used industrially and commercially are required by law to be assessed for their genotoxic potential. However, all currently used assays have major limitations and despite intense effort, there is no universal agreement on which tests should be employed, or how to interpret results. We have developed a new as...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2010.09.017

    authors: Evans TJ,Yamamoto KN,Hirota K,Takeda S

    更新日期:2010-12-10 00:00:00

  • Multiple pathways cooperate to facilitate DNA replication fork progression through alkylated DNA.

    abstract::Eukaryotic genomes are especially vulnerable to DNA damage during the S phase of the cell cycle, when chromosomes must be duplicated. The stability of DNA replication forks is critical to achieve faithful chromosome replication and is severely compromised when forks encounter DNA lesions. To maintain genome integrity,...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.06.014

    authors: Vázquez MV,Rojas V,Tercero JA

    更新日期:2008-10-01 00:00:00

  • Validation of XP-C pathogenic variations in archival material from a live XP patient.

    abstract::Xeroderma pigmentosum (XP) genetic complementation group C (XP-C) is the most common form of the disease worldwide. Thirty-four distinct genetic defects have been identified in 45 XP-C patients. Further identification of such defects and the frequency of their occurrence offers the potential of generating diagnostic a...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2006.09.009

    authors: McDaniel LD,Rivera-Begeman A,Doughty AT,Schultz RA,Friedberg EC

    更新日期:2007-01-04 00:00:00

  • Analysis of mutational signatures in C. elegans: Implications for cancer genome analysis.

    abstract::Genome integrity is constantly challenged by exogenous and endogenous insults, and mutations are associated with inherited disease and cancer. Here we summarize recent studies that utilized C. elegans whole genome next generation sequencing to experimentally determine mutational signatures associated with mutagen expo...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2020.102957

    authors: Meier B,Volkova NV,Gerstung M,Gartner A

    更新日期:2020-11-01 00:00:00

  • XPA protein as a limiting factor for nucleotide excision repair and UV sensitivity in human cells.

    abstract::Nucleotide excision repair (NER) acts on a variety of DNA lesions, including damage induced by many chemotherapeutic drugs. Cancer therapy with such drugs might be improved by reducing the NER capacity of tumors. It is not known, however to what extent any individual NER protein is rate-limiting for any step of the re...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2005.12.001

    authors: Köberle B,Roginskaya V,Wood RD

    更新日期:2006-05-10 00:00:00

  • Measurement of DNA damage in peripheral blood by the γ-H2AX assay as predictor of colorectal cancer risk.

    abstract::The detection of γ-H2AX focus is one of the most sensitive ways to monitor DNA double-strand breaks (DSBs). Although changes in γ-H2AX activity have been studied in tumor cells in colorectal cancer (CRC), changes in peripheral blood lymphocytes (PBLs) have not been examined previously. We hypothesize that higher level...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2017.03.001

    authors: Zhao L,Chang DW,Gong Y,Eng C,Wu X

    更新日期:2017-05-01 00:00:00

  • Intrinsic mitochondrial DNA repair defects in Ataxia Telangiectasia.

    abstract::Ataxia Telangiectasia (A-T) is a progressive childhood disorder characterized most notably by cerebellar degeneration and predisposition to cancer. A-T is caused by mutations in the kinase ATM, a master regulator of the DNA double-strand break response. In addition to DNA-damage signaling defects, A-T cells display mi...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.11.002

    authors: Sharma NK,Lebedeva M,Thomas T,Kovalenko OA,Stumpf JD,Shadel GS,Santos JH

    更新日期:2014-01-01 00:00:00

  • Alleles of newly identified barley gene HvPARP3 exhibit changes in efficiency of DNA repair.

    abstract::Genome integrity is constantly challenged by endo- and exogenous DNA-damaging factors. The influence of genotoxic agents causes an accumulation of DNA lesions, which if not repaired, become mutations that can cause various abnormalities in a cell metabolism. The main pathway of DSB repair, which is based on non-homolo...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2015.02.018

    authors: Stolarek M,Gruszka D,Braszewska-Zalewska A,Maluszynski M

    更新日期:2015-04-01 00:00:00

  • Biochemical mapping of human NEIL1 DNA glycosylase and AP lyase activities.

    abstract::Base excision repair of oxidized DNA in human cells is initiated by several DNA glycosylases with overlapping substrate specificity. The human endonuclease VIII homologue NEIL1 removes a broad spectrum of oxidized pyrimidine and purine lesions. In this study of NEIL1 we have identified several key residues, located in...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2012.07.002

    authors: Vik ES,Alseth I,Forsbring M,Helle IH,Morland I,Luna L,Bjørås M,Dalhus B

    更新日期:2012-09-01 00:00:00

  • Claspin, a regulator of Chk1 in DNA replication stress pathway.

    abstract::Regulation of the vertebrate checkpoint kinase Chk1 involves several protein complexes including the recently identified protein Claspin. Claspin associates with Chk1 upon replication stress and DNA damage and is required for Chk1 activation in both Xenopus and human systems. More importantly, Claspin is involved in r...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2004.03.001

    authors: Chini CC,Chen J

    更新日期:2004-08-01 00:00:00

  • Redox and epigenetic regulation of the APE1 gene in the hippocampus of piglets: The effect of early life exposures.

    abstract::Oxidative stress via redox reactions can regulate DNA repair pathways. The base excision repair (BER) enzyme apurinic/apyrimidinic endonuclease 1 (APE1) is a key player in the redox regulation of DNA repair. Environmental factors can alter the methylation of DNA repair genes, change their expression and thus modulate ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2014.03.011

    authors: Langie SA,Kowalczyk P,Tomaszewski B,Vasilaki A,Maas LM,Moonen EJ,Palagani A,Godschalk RW,Tudek B,van Schooten FJ,Berghe WV,Zabielski R,Mathers JC

    更新日期:2014-06-01 00:00:00

  • The multifunctional DNA repair/redox enzyme Ape1/Ref-1 promotes survival of neurons after oxidative stress.

    abstract::Although correlative studies demonstrate a reduction in the expression of apurinic/apyrimidinic endonuclease/redox effector factor (Ape1/Ref-1 or Ape1) in neural tissues after neuronal insult, the role of Ape1 in regulating neurotoxicity remains to be elucidated. To address this issue, we examined the effects of reduc...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2004.11.006

    authors: Vasko MR,Guo C,Kelley MR

    更新日期:2005-03-02 00:00:00

  • Repair of radiation induced DNA double strand breaks by backup NHEJ is enhanced in G2.

    abstract::In higher eukaryotes DNA double strand breaks (DSBs) are repaired by homologous recombination (HRR) or non-homologous end joining (NHEJ). In addition to the DNA-PK dependent pathway of NHEJ (D-NHEJ), cells employ a backup pathway (B-NHEJ) utilizing Ligase III and PARP-1. The cell cycle dependence and coordination of t...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.11.008

    authors: Wu W,Wang M,Wu W,Singh SK,Mussfeldt T,Iliakis G

    更新日期:2008-02-01 00:00:00

  • Regulation of GLI1 by cis DNA elements and epigenetic marks.

    abstract::GLI1 is one of three transcription factors (GLI1, GLI2 and GLI3) that mediate the Hedgehog signal transduction pathway and play important roles in normal development. GLI1 and GLI2 form a positive-feedback loop and function as human oncogenes. The mouse and human GLI1 genes have untranslated 5' exons and large introns...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2019.04.011

    authors: Taylor R,Long J,Yoon JW,Childs R,Sylvestersen KB,Nielsen ML,Leong KF,Iannaccone S,Walterhouse DO,Robbins DJ,Iannaccone P

    更新日期:2019-07-01 00:00:00

  • HPV induction of APOBEC3 enzymes mediate overall survival and response to cisplatin in head and neck cancer.

    abstract::Human papillomavirus (HPV) is associated with the development of head and neck squamous cell carcinomas (HNSC). Cisplatin is used to treat HNSC and induces DNA adducts including interstrand crosslinks (ICLs). Previous reports have shown that HPV positive HNSC patients respond better to cisplatin therapy. Our previous ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2020.102802

    authors: Conner KL,Shaik AN,Ekinci E,Kim S,Ruterbusch JJ,Cote ML,Patrick SM

    更新日期:2020-03-01 00:00:00

  • Role of the DNA repair glycosylase OGG1 in the activation of murine splenocytes.

    abstract::OGG1 (8-oxoguanine-DNA glycosylase) is the major DNA repair glycosylase removing the premutagenic DNA base modification 8-oxo-7,8-dihydroguanine (8-oxoG) from the genome of mammalian cells. In addition, there is accumulating evidence that OGG1 and its substrate 8-oxoG might function in the regulation of certain genes,...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2017.08.005

    authors: Seifermann M,Ulges A,Bopp T,Melcea S,Schäfer A,Oka S,Nakabeppu Y,Klungland A,Niehrs C,Epe B

    更新日期:2017-10-01 00:00:00

  • BACH2: a marker of DNA damage and ageing.

    abstract::DNA damage and ageing share expression changes involving alterations in many aspects of metabolism, suppression of growth and upregulation of defence and genome maintenance systems. "Omics" technologies have permitted large-scale parallel measurements covering global cellular constituents and aided the identification ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.08.016

    authors: Uittenboogaard LM,Payan-Gomez C,Pothof J,van Ijcken W,Mastroberardino PG,van der Pluijm I,Hoeijmakers JH,Tresini M

    更新日期:2013-11-01 00:00:00

  • Is RecG a general guardian of the bacterial genome?

    abstract::The RecG protein of Escherichia coli is a double-stranded DNA translocase that unwinds a variety of branched DNAs in vitro, including Holliday junctions, replication forks, D-loops and R-loops. Coupled with the reported pleiotropy of recG mutations, this broad range of potential targets has made it hard to pin down wh...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2009.12.014

    authors: Rudolph CJ,Upton AL,Briggs GS,Lloyd RG

    更新日期:2010-03-02 00:00:00

  • Novel mutator mutants of E. coli nrdAB ribonucleotide reductase: insight into allosteric regulation and control of mutation rates.

    abstract::Ribonucleotide reductase (RNR) is the enzyme critically responsible for the production of the 5'-deoxynucleoside-triphosphates (dNTPs), the direct precursors for DNA synthesis. The dNTP levels are tightly controlled to permit high efficiency and fidelity of DNA synthesis. Much of this control occurs at the level of th...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2012.02.001

    authors: Ahluwalia D,Bienstock RJ,Schaaper RM

    更新日期:2012-05-01 00:00:00

  • The endonuclease domain of Bacillus subtilis MutL is functionally asymmetric.

    abstract::DNA mismatch repair is an evolutionarily conserved repair pathway that corrects replication errors. In most prokaryotes and all eukaryotes, the mismatch repair protein MutL is a sequence-unspecific endonuclease that nicks the newly synthesized strand and marks it for repair. Although the sequence of the endonuclease d...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2018.10.003

    authors: Liu L,Ortiz Castro MC,Rodríguez González J,Pillon MC,Guarné A

    更新日期:2019-01-01 00:00:00

  • Dynamics of enzymatic interactions during short flap human Okazaki fragment processing by two forms of human DNA polymerase δ.

    abstract::Lagging strand DNA replication requires the concerted actions of DNA polymerase δ, Fen1 and DNA ligase I for the removal of the RNA/DNA primers before ligation of Okazaki fragments. To better understand this process in human cells, we have reconstituted Okazaki fragment processing by the short flap pathway in vitro wi...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.08.008

    authors: Lin SH,Wang X,Zhang S,Zhang Z,Lee EY,Lee MY

    更新日期:2013-11-01 00:00:00

  • Human MutS and FANCM complexes function as redundant DNA damage sensors in the Fanconi Anemia pathway.

    abstract::The Fanconi Anemia (FA) pathway encodes a DNA damage response activated by DNA damage-stalled replication forks. Current evidence suggests that the FA pathway initiates with DNA damage recognition by the FANCM complex (FANCM/FAAP24/MHF). However, genetic inactivation of FANCM in mouse and DT40 cells causes only a part...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2011.09.006

    authors: Huang M,Kennedy R,Ali AM,Moreau LA,Meetei AR,D'Andrea AD,Chen CC

    更新日期:2011-12-10 00:00:00

  • DNA polymerase I proofreading exonuclease activity is required for endonuclease V repair pathway both in vitro and in vivo.

    abstract::Deamination of adenine can occur spontaneously under physiological conditions to generate the highly mutagenic lesion, deoxyinosine (hypoxanthine deoxyribonucleotide, dI). In DNA, dI preferably pairs with cytosine rather than thymine and results in A:T to G:C transition mutations after DNA replication. The deamination...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2018.02.005

    authors: Su KY,Lin LI,Goodman SD,Yen RS,Wu CY,Chang WC,Yang YC,Cheng WC,Fang WH

    更新日期:2018-04-01 00:00:00

  • The role of DNA repair in brain related disease pathology.

    abstract::Oxidative DNA damage is implicated in brain aging, neurodegeneration and neurological diseases. Damage can be created by normal cellular metabolism, which accumulates with age, or by acute cellular stress conditions which create bursts of oxidative damage. Brain cells have a particularly high basal level of metabolic ...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2013.04.010

    authors: Canugovi C,Misiak M,Ferrarelli LK,Croteau DL,Bohr VA

    更新日期:2013-08-01 00:00:00

  • DNA decay and limited Rad53 activation after liquid holding of UV-treated nucleotide excision repair deficient S. cerevisiae cells.

    abstract::The DNA damage checkpoint is a surveillance mechanism activated by DNA lesions and devoted to the maintenance of genome stability. It is considered as a signal transduction cascade, involving a sensing step, the activation of a set of protein kinases and the transmission and amplification of the damage signal through ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2004.06.019

    authors: Giannattasio M,Lazzaro F,Siede W,Nunes E,Plevani P,Muzi-Falconi M

    更新日期:2004-12-02 00:00:00

  • Contribution of DNA unwrapping from histone octamers to the repair of oxidatively damaged DNA in nucleosomes.

    abstract::Reactive oxygen species generate ~20,000 oxidative lesions in the DNA of every cell, every day. Most of these lesions are located within nucleosomes, which package DNA in chromatin and impede base excision repair (BER). We demonstrated previously that periodic, spontaneous partial unwrapping of DNA from the underlying...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.08.010

    authors: Maher RL,Prasad A,Rizvanova O,Wallace SS,Pederson DS

    更新日期:2013-11-01 00:00:00