Temperature response of Rubisco kinetics in Arabidopsis thaliana: thermal breakpoints and implications for reaction mechanisms.

Abstract:

:Enhancement of Rubisco kinetics could improve photosynthetic efficiency, ultimately resulting in increased crop yield. However, imprecise knowledge of the reaction mechanism and the individual rate constants limits our ability to optimize the enzyme. Membrane inlet mass spectrometry (MIMS) may offer benefits over traditional methods for determining individual rate constants of the Rubisco reaction mechanism, as it can directly monitor concentration changes in CO2, O2, and their isotopologs during assays. However, a direct comparison of MIMS with the traditional radiolabel method of determining Rubisco kinetic parameters has not been made. Here, the temperature responses of Rubisco kinetic parameters from Arabidopsis thaliana were measured using radiolabel and MIMS methods. The two methods provided comparable parameters above 25 °C, but temperature responses deviated at low temperature as MIMS-derived catalytic rates of carboxylation, oxygenation, and CO2/O2 specificity showed thermal breakpoints. Here, we discuss the variability and uncertainty surrounding breakpoints in the Rubisco temperature response and the relevance of individual rate constants of the reaction mechanisms to potential breakpoints.

journal_name

J Exp Bot

authors

Boyd RA,Cavanagh AP,Kubien DS,Cousins AB

doi

10.1093/jxb/ery355

subject

Has Abstract

pub_date

2019-01-01 00:00:00

pages

231-242

issue

1

eissn

0022-0957

issn

1460-2431

pii

5164292

journal_volume

70

pub_type

杂志文章
  • Hemoglobin LjGlb1-1 is involved in nodulation and regulates the level of nitric oxide in the Lotus japonicus-Mesorhizobium loti symbiosis.

    abstract::Leghemoglobins transport and deliver O2 to the symbiosomes inside legume nodules and are essential for nitrogen fixation. However, the roles of other hemoglobins (Hbs) in the rhizobia-legume symbiosis are unclear. Several Lotus japonicus mutants affecting LjGlb1-1, a non-symbiotic class 1 Hb, have been used to study t...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw290

    authors: Fukudome M,Calvo-Begueria L,Kado T,Osuki K,Rubio MC,Murakami E,Nagata M,Kucho K,Sandal N,Stougaard J,Becana M,Uchiumi T

    更新日期:2016-09-01 00:00:00

  • Improving the nutritive value of rice seeds: elevation of cysteine and methionine contents in rice plants by ectopic expression of a bacterial serine acetyltransferase.

    abstract::With the aim of increasing the cysteine level in rice (Oryza sativa L.) and thus improving its nutritional quality, transgenic rice plants were generated expressing an Escherichia coli serine acetyltransferase isoform (EcSAT), the enzyme synthesizing O-acetylserine, the precursor of cysteine. The gene was fused to the...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers253

    authors: Nguyen HC,Hoefgen R,Hesse H

    更新日期:2012-10-01 00:00:00

  • Can dual chlorophyll fluorescence excitation be used to assess the variation in the content of UV-absorbing phenolic compounds in leaves of temperate tree species along a light gradient?

    abstract::The present study assesses light-induced variations in phenolic compounds in leaves of saplings of two co-occurring temperate species (Acer platanoides L., and Fraxinus excelsior L.) along a light gradient using a new non-invasive optical method (Dualex). The Dualex-derived UV absorbance of leaf epidermis (the sum of ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erm030

    authors: Barthod S,Cerovic Z,Epron D

    更新日期:2007-01-01 00:00:00

  • Calcium deprivation disrupts enlargement of Chara corallina cells: further evidence for the calcium pectate cycle.

    abstract::Pectin is a normal constituent of cell walls of green plants. When supplied externally to live cells or walls isolated from the large-celled green alga Chara corallina, pectin removes calcium from load-bearing cross-links in the wall, loosening the structure and allowing it to deform more rapidly under the action of t...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers089

    authors: Proseus TE,Boyer JS

    更新日期:2012-06-01 00:00:00

  • Abundance and distribution of RNA polymerase II in Arabidopsis interphase nuclei.

    abstract::RNA polymerase II (RNAPII) is responsible for the transcription of most eukaryotic protein-coding genes. Analysing the topological distribution and quantification of RNAPII can contribute to understanding its function in interphase nuclei. Previously it was shown that RNAPII molecules in plant nuclei form reticulate s...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erv091

    authors: Schubert V,Weisshart K

    更新日期:2015-03-01 00:00:00

  • Targeting of a polytopic membrane protein to the inner envelope membrane of chloroplasts in vivo involves multiple transmembrane segments.

    abstract::The inner envelope membrane (IEM) of the chloroplast plays crucial roles in forming an osmotic barrier and controlling metabolite exchange between the organelle and the cytosol. The IEM therefore harbours a number of membrane proteins and requires the import and integration of these nuclear-encoded proteins for its bi...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eru290

    authors: Okawa K,Inoue H,Adachi F,Nakayama K,Ito-Inaba Y,Schnell DJ,Uehara S,Inaba T

    更新日期:2014-10-01 00:00:00

  • Formation and possible roles of nitric oxide in plant roots.

    abstract::Nitric oxide has been reported to act as a signalling molecule in different plant tissues and to participate in a variety of physiological processes. It is produced by different enzymes and sources. The root-specific plasma membrane-bound enzymes forming NO from the substrates nitrate and nitrite are of particular int...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erj058

    authors: Stöhr C,Stremlau S

    更新日期:2006-01-01 00:00:00

  • Expression of galactinol synthase from Ammopiptanthus nanus in tomato improves tolerance to cold stress.

    abstract::Soluble carbohydrates not only directly affect plant growth and development but also act as signal molecules in processes that enhance tolerance to cold stress. Raffinose family oligosaccharides (RFOs) are an example and play an important role in abiotic stress tolerance. This study aimed to determine whether galactin...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erz450

    authors: Liu Y,Zhang L,Meng S,Liu Y,Zhao X,Pang C,Zhang H,Xu T,He Y,Qi M,Li T

    更新日期:2020-01-01 00:00:00

  • Molecular characterization and expression analysis of the Rab GTPase family in Vitis vinifera reveal the specific expression of a VvRabA protein.

    abstract::As a first step to investigate whether Rab GTPases are involved in grape berry development, the Vitis vinifera EST and gene databases were searched for members of the VvRab family. The grapevine genome was found to contain 26 VvRabs that could be distributed into all of the eight groups described in the literature for...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ern132

    authors: Abbal P,Pradal M,Muniz L,Sauvage FX,Chatelet P,Ueda T,Tesniere C

    更新日期:2008-01-01 00:00:00

  • Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.

    abstract::Root hairs are important for nutrient uptake, anchorage, and plant-microbe interactions. From a population of rice (Oryza sativa) mutagenized by ethyl methanesulfonate (EMS), a short root hair2 (srh2) mutant was identified. In hydroponic culture, srh2 seedlings were significantly reduced in root hair length. Bubble-li...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eru189

    authors: Wang C,Li S,Ng S,Zhang B,Zhou Y,Whelan J,Wu P,Shou H

    更新日期:2014-08-01 00:00:00

  • Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.

    abstract::Transcription factors of the NAC family are known to be involved in various developmental processes and in response to environmental stresses. Whereas NAC genes have been widely studied in response to abiotic stresses, little is known about their role in response to biotic stresses, especially in crops. Here, the firs...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ert277

    authors: Le Hénanff G,Profizi C,Courteaux B,Rabenoelina F,Gérard C,Clément C,Baillieul F,Cordelier S,Dhondt-Cordelier S

    更新日期:2013-11-01 00:00:00

  • Identification, introgression, and validation of fruit volatile QTLs from a red-fruited wild tomato species.

    abstract::Volatile organic compounds (VOCs) are major determinants of fruit flavor, a primary objective in tomato breeding. A recombinant inbred line (RIL) population consisting of 169 lines derived from a cross between Solanum lycopersicum and a red-fruited wild tomato species Solanum pimpinellifolium accession (SP) was charac...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw455

    authors: Rambla JL,Medina A,Fernández-Del-Carmen A,Barrantes W,Grandillo S,Cammareri M,López-Casado G,Rodrigo G,Alonso A,García-Martínez S,Primo J,Ruiz JJ,Fernández-Muñoz R,Monforte AJ,Granell A

    更新日期:2017-01-01 00:00:00

  • Infection process and the interaction of rice roots with rhizobia.

    abstract::Most rhizobial strains inhibit rice root growth in the presence of calcium or potassium nitrates, but not ammonium nitrate. Certain rhizobial strains, however, such as strain R4, do not inhibit rice growth and can enter rice roots and multiply in the intercellular spaces. By using the green fluorescent protein (GFP) a...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erm181

    authors: Perrine-Walker FM,Prayitno J,Rolfe BG,Weinman JJ,Hocart CH

    更新日期:2007-01-01 00:00:00

  • Knockdown of glycine decarboxylase complex alters photorespiratory carbon isotope fractionation in Oryza sativa leaves.

    abstract::The influence of reduced glycine decarboxylase complex (GDC) activity on leaf atmosphere CO2 and 13CO2 exchange was tested in transgenic Oryza sativa with the GDC H-subunit knocked down in leaf mesophyll cells. Leaf measurements on transgenic gdch knockdown and wild-type plants were carried out in the light under phot...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erz083

    authors: Giuliani R,Karki S,Covshoff S,Lin HC,Coe RA,Koteyeva NK,Quick WP,Von Caemmerer S,Furbank RT,Hibberd JM,Edwards GE,Cousins AB

    更新日期:2019-05-09 00:00:00

  • Extracellular beta-glucosidase activity in barley involved in the hydrolysis of ABA glucose conjugate in leaves.

    abstract::Abscisic acid conjugate concentrations increased in barley xylem sap under salinity, whereas it remained at a low level in the intercellular washing fluid (IWF) of barley primary leaves (Hordeum vulgare cv. Gerbel). Here it is shown that IWF contains beta-glucosidase activity which releases abscisic acid (ABA) from th...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:

    authors: Dietz KJ,Sauter A,Wichert K,Messdaghi D,Hartung W

    更新日期:2000-05-01 00:00:00

  • Root architecture simulation improves the inference from seedling root phenotyping towards mature root systems.

    abstract::Root phenotyping provides trait information for plant breeding. A shortcoming of high-throughput root phenotyping is the limitation to seedling plants and failure to make inferences on mature root systems. We suggest root system architecture (RSA) models to predict mature root traits and overcome the inference problem...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw494

    authors: Zhao J,Bodner G,Rewald B,Leitner D,Nagel KA,Nakhforoosh A

    更新日期:2017-02-01 00:00:00

  • Effect of mineral sulphur availability on nitrogen and sulphur uptake and remobilization during the vegetative growth of Brassica napus L.

    abstract::Because it has a high demand for sulphur (S), oilseed rape is particularly sensitive to S limitation. However, the physiological effects of S limitation remain unclear, especially during the rosette stage. For this reason a study was conducted to determine the effects of mineral S limitation on nitrogen (N) and S upta...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erq096

    authors: Abdallah M,Dubousset L,Meuriot F,Etienne P,Avice JC,Ourry A

    更新日期:2010-06-01 00:00:00

  • Soybean cultivars 'Williams 82' and 'Maple Arrow' produce both urea and ammonia during ureide degradation.

    abstract::The ability of two soybean (Glycine max L. [Merrill]) cultivars, 'Williams 82' and 'Maple Arrow', which were reported to use different ureide degradation pathways, to degrade the ureides allantoin and allantoate was investigated. Protein fractions and total leaf homogenates from the fourth trifoliate leaves of both cu...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erh100

    authors: Todd CD,Polacco JC

    更新日期:2004-04-01 00:00:00

  • To what extent may changes in the root system architecture of Arabidopsis thaliana grown under contrasted homogenous nitrogen regimes be explained by changes in carbon supply? A modelling approach.

    abstract::Root system architecture adapts to low nitrogen (N) nutrition. Some adaptations may be mediated by modifications of carbon (C) fluxes. The objective of this study was to test the hypothesis that changes in root system architecture under different N regimes may be accounted for by using simple hypotheses of C allocatio...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erq090

    authors: Brun F,Richard-Molard C,Pagès L,Chelle M,Ney B

    更新日期:2010-05-01 00:00:00

  • Ribonuclease J is required for chloroplast and embryo development in Arabidopsis.

    abstract::Chloroplasts perform many essential metabolic functions and their proper development is critically important in embryogenesis. However, little is known about how chloroplasts function in embryogenesis and more relevant components need to be characterized. In this study, we show that Arabidopsis Ribonuclease J (RNase J...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erv010

    authors: Chen H,Zou W,Zhao J

    更新日期:2015-04-01 00:00:00

  • Exploitation of genomic sequences in a systematic analysis to access how cyanobacteria sense environmental stress.

    abstract::The perception and subsequent transduction of environmental signals are primary events in the acclimation of living organisms to changes in their environment. Many of the molecular sensors and transducers of environmental stress cannot be identified by traditional and conventional methods. Therefore, the genomic infor...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erj005

    authors: Murata N,Suzuki I

    更新日期:2006-01-01 00:00:00

  • Plasma membrane isolation from freshwater and salt-tolerant species of Chara: antibody cross-reactions and phosphohydrolase activities.

    abstract::Plasma membranes were isolated using the aqueous polymer two-phase partition method from the algae Chara corallina and Chara longifolia, algae which differ in their ability to grow in saline environments. Enrichment of plasma membrane and depletion of tonoplast relative to the microsomal fraction was monitored using p...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/47.4.589

    authors: Faraday CD,Spanswick RM,Bisson MA

    更新日期:1996-04-01 00:00:00

  • Mechanical properties of cuticles and their primary determinants.

    abstract::Cuticles envelope primary surfaces of the above-ground portion of plants. They function as barriers to water movement and to gas exchange, and in pathogen defense. To serve as a barrier on growing organs, cuticles must remain intact but at the same time must accommodate ongoing growth. Minimizing cuticle failure has s...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erx265

    authors: Khanal BP,Knoche M

    更新日期:2017-11-09 00:00:00

  • Synthetic biology approaches for improving photosynthesis.

    abstract::The phenomenal increase in agricultural yields that we have witnessed in the last century has slowed down as we approach the limits of selective breeding and optimization of cultivation techniques. To support the yield increase required to feed an ever-growing population, we will have to identify new ways to boost the...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erz029

    authors: Kubis A,Bar-Even A

    更新日期:2019-03-11 00:00:00

  • Transpiration efficiency: new insights into an old story.

    abstract::Producing more food per unit of water has never been as important as it is at present, and the demand for water by economic sectors other than agriculture will necessarily put a great deal of pressure on a dwindling resource, leading to a call for increases in the productivity of water in agriculture. This topic has b...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/eru040

    authors: Vadez V,Kholova J,Medina S,Kakkera A,Anderberg H

    更新日期:2014-11-01 00:00:00

  • Regulation of high-affinity sulphate transporters in plants: towards systematic analysis of sulphur signalling and regulation.

    abstract::Plants require the function of plasma membrane-bound sulphate transporters for the initial uptake of inorganic sulphate. Part of this fundamental process is the energy-dependent proton/sulphate co-transport systems that are located in the surface cell layers of roots. During sulphur limitation, plants are able to acti...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erh175

    authors: Maruyama-Nakashita A,Nakamura Y,Yamaya T,Takahashi H

    更新日期:2004-08-01 00:00:00

  • Phenotypic plasticity in cell walls of maize brown midrib mutants is limited by lignin composition.

    abstract::The hydrophobic cell wall polymer lignin is deposited in specialized cells to make them impermeable to water and prevent cell collapse as negative pressure or gravitational force is exerted. The variation in lignin subunit composition that exists among different species, and among different tissues within the same spe...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erq093

    authors: Vermerris W,Sherman DM,McIntyre LM

    更新日期:2010-05-01 00:00:00

  • The family of Peps and their precursors in Arabidopsis: differential expression and localization but similar induction of pattern-triggered immune responses.

    abstract::In Arabidopsis thaliana, the endogenous danger peptides, AtPeps, have been associated with plant defences reminiscent of those induced in pattern-triggered immunity. AtPeps are perceived by two homologous receptor kinases, PEPR1 and PEPR2, and are encoded in the C termini of the PROPEP precursors. Here, we report that...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ert330

    authors: Bartels S,Lori M,Mbengue M,van Verk M,Klauser D,Hander T,Böni R,Robatzek S,Boller T

    更新日期:2013-12-01 00:00:00

  • The Medicago truncatula Yellow Stripe1-Like3 gene is involved in vascular delivery of transition metals to root nodules.

    abstract::Symbiotic nitrogen fixation carried out in legume root nodules requires transition metals. These nutrients are delivered by the host plant to the endosymbiotic nitrogen-fixing bacteria living within the nodule cells, a process in which vascular transport is essential. As members of the Yellow Stripe-Like (YSL) family ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eraa390

    authors: Castro-Rodríguez R,Abreu I,Reguera M,Novoa-Aponte L,Mijovilovich A,Escudero V,Jiménez-Pastor FJ,Abadía J,Wen J,Mysore KS,Álvarez-Fernández A,Küpper H,Imperial J,González-Guerrero M

    更新日期:2020-12-31 00:00:00

  • A root- and hypocotyl-specific gene coding for copper-containing amine oxidase is related to cell expansion in soybean seedlings.

    abstract::Polyamines are considered to participate in various processes of plant development. In this study, the possible implication of putrescine catabolism by the copper-containing amine oxidases (CuAOs, EC 1.4.3.6) in the development of roots and hypocotyls was examined. For this purpose, two cDNA clones of Glycine max (L.)...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erj009

    authors: Delis C,Dimou M,Flemetakis E,Aivalakis G,Katinakis P

    更新日期:2006-01-01 00:00:00