Abstract:
:Natural medicines (i.e., herbal medicines, traditional formulas) are useful for treatment of multifactorial and chronic diseases. Here, we present KampoDB ( http://wakanmoview.inm.u-toyama.ac.jp/kampo/ ), a novel platform for the analysis of natural medicines, which provides various useful scientific resources on Japanese traditional formulas Kampo medicines, constituent herbal drugs, constituent compounds, and target proteins of these constituent compounds. Potential target proteins of these constituent compounds were predicted by docking simulations and machine learning methods based on large-scale omics data (e.g., genome, proteome, metabolome, interactome). The current version of KampoDB contains 42 Kampo medicines, 54 crude drugs, 1230 constituent compounds, 460 known target proteins, and 1369 potential target proteins, and has functional annotations for biological pathways and molecular functions. KampoDB is useful for mode-of-action analysis of natural medicines and prediction of new indications for a wide range of diseases.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Sawada R,Iwata M,Umezaki M,Usui Y,Kobayashi T,Kubono T,Hayashi S,Kadowaki M,Yamanishi Ydoi
10.1038/s41598-018-29516-1subject
Has Abstractpub_date
2018-07-25 00:00:00pages
11216issue
1issn
2045-2322pii
10.1038/s41598-018-29516-1journal_volume
8pub_type
杂志文章abstract::Disturbances in calcium metabolism are common in individuals with chronic kidney disease (CKD), but whether they are associated with subsequent kidney function decline is less clear. In a CKD 3-5 cohort of 15,755 adult citizens of Stockholm with creatinine tests taken during 2006-2011 and concurrent calcium testing at...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-23500-5
更新日期:2018-03-26 00:00:00
abstract::Central nervous system-specific proteins (CSPs), transported across the damaged blood-brain-barrier (BBB) to cerebrospinal fluid (CSF) and blood (serum), might be promising diagnostic, prognostic and predictive protein biomarkers of disease in individual multiple sclerosis (MS) patients because they are not expected t...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep06210
更新日期:2014-09-03 00:00:00
abstract::A paper-based upconversion fluorescence resonance energy transfer assay device is proposed for sensitive detection of CEA. The device is fabricated on a normal filter paper with simple nano-printing method. Upconversion nanoparticles tagged with specific antibodies are printed to the test zones on the test paper, foll...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep23406
更新日期:2016-03-22 00:00:00
abstract::The pathophysiological implications of plasminogen activator inhibitor-1 (PAI-1) in HCV infection remain obscure. This prospective study evaluated 669 HCV patients, of whom 536 had completed a course of anti-HCV therapy and had pre-, peri- and post-therapy measurements of various profiles, including PAI-1 levels. Mult...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep42503
更新日期:2017-02-13 00:00:00
abstract::The promyelocytic leukemia (PML) protein is an essential component of PML nuclear bodies (PML NBs) frequently lost in cancer. PML NBs coordinate chromosomal regions via modification of nuclear proteins that in turn may regulate genes in the vicinity of these bodies. However, few PML NB-associated genes have been ident...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep45038
更新日期:2017-03-23 00:00:00
abstract::Facial mimicry has been suggested to be a behavioral index for emotional empathy. The present study is the first to investigate the link between facial muscle activity and empathy for pain by facial electromyographic (EMG) recording while observers watched videos depicting real-life painful events. Three types of visu...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep16988
更新日期:2015-12-09 00:00:00
abstract::Passive immunotherapy may have particular benefits for the treatment of severe influenza infection in at-risk populations, however little is known of the impact of passive immunotherapy on the formation of memory responses to the virus. Ideally, passive immunotherapy should attenuate the severity of infection while st...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep29154
更新日期:2016-07-06 00:00:00
abstract::Superfluidity and superconductivity have been widely studied since the last century in many different contexts ranging from nuclear matter to atomic quantum gases. The rigidity of these systems with respect to external perturbations results in frictionless motion for superfluids and resistance-free electric current fl...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-08941-8
更新日期:2017-08-22 00:00:00
abstract::By moving the alkoxy group on the spacer from position 5 to position 4 to add another protocol for the algorithm for intermolecular and intramolecular hydrogen bonding interactions, highly regioselectivity of noncovalent synthesis of the hydrazide-based cyclic hexamers was achieved: one out of thirteen possible isomer...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep01059
更新日期:2013-01-01 00:00:00
abstract::Osteoporosis is the most common age-related bone disease worldwide and is usually clinically asymptomatic until the first fracture happens. MicroRNAs are critical molecular regulators in bone remodelling processes and are stabilised in the blood. The aim of this project was to identify circulatory microRNAs associated...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-26525-y
更新日期:2018-05-30 00:00:00
abstract::Fundamental interest for 2D electron gas (2DEG) systems has been recently renewed with the advent of 2D materials and their potential high-impact applications in optoelectronics. Here, we investigate a 2DEG created by the electron transfer from a Ag adatom gas deposited on a Si(111) [Formula: see text]-Ag surface to a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-10300-6
更新日期:2017-09-06 00:00:00
abstract::Fitness-related costs of evolving insecticide resistance have been reported in a number of insect species, but the interplay between evolutionary adaptation to insecticide pressure and variable environmental conditions has received little attention. We provisioned nymphs from three German cockroach (Blattella germanic...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep28731
更新日期:2016-06-27 00:00:00
abstract::Carbon coated TiO2 (TiO2@C) is fabricated by a convenient and green one-pot solvothermal method, in which ethylene glycol serve as both the reaction medium and carbon source without the addition of any other carbon additives. During the solvothermal process, ethylene glycol polymerize and coordinate with Ti4+ to form ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep43895
更新日期:2017-03-03 00:00:00
abstract::Ecological adaptations to seasonal changes are often observed in the phenotypic traits of plants and animals, and these adaptations are usually expressed through the production of different biochemical end products. In this study, ecological adaptations are observed in a biochemical pathway without alteration of the e...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep20234
更新日期:2016-02-01 00:00:00
abstract::Studies of the molecular mechanisms involved in the formation of the albino leaf cells are important for understanding the development of chimera leaves in Ananas comosus var. bracteatus. In this study, we identified a total of 163 novel miRNAs involved in the development of complete white (CWh) and complete green (CG...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-20261-z
更新日期:2018-01-31 00:00:00
abstract::The Paraná delta, growing at a rate of c. 2 km(2) yr(-1) since 6,000 yrs, is one of the most complete records of the Late Holocene in southern South America. The evolution of this 17,400 km(2) delta enclosed in Plata estuary, can be tracked by a series of 343 successive coastal-ridges showing a c.11 years period, in c...
journal_title:Scientific reports
pub_type: 历史文章,杂志文章
doi:10.1038/srep12851
更新日期:2015-08-06 00:00:00
abstract::The domestic dog (Canis familiaris) is a promising animal model. Yet, the canine neuroscience literature is predominantly comprised of studies wherein (semi-)invasive methods and intensive training are used to study awake dog behavior. Given prior findings with humans and/or dogs, our goal was to assess, in 16 family ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-25546-x
更新日期:2018-05-08 00:00:00
abstract::Advanced electron microscopy technologies have made it possible to perform precise double-slit interference experiments. We used a 1.2-MV field emission electron microscope providing coherent electron waves and a direct detection camera system enabling single-electron detections at a sub-second exposure time. We devel...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-19380-4
更新日期:2018-01-17 00:00:00
abstract::The development of scalable synthesis techniques for optically transparent, electrically conductive coatings is in great demand due to the constantly increasing market price and limited resources of indium for indium tin oxide (ITO) materials currently applied in most of the optoelectronic devices. This work pioneers ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep13710
更新日期:2015-09-03 00:00:00
abstract::Transformation optics (TO) concept well known for its huge possibility in patterning the path of electromagnetic waves is exploited to design a beam steering lens. The broadband directive in-phase emission in a desired off-normal direction from an array of equally fed radiators is numerically and experimentally report...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep18819
更新日期:2016-01-05 00:00:00
abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...
journal_title:Scientific reports
pub_type: 已发布勘误
doi:10.1038/s41598-020-60111-5
更新日期:2020-02-18 00:00:00
abstract::F-box and WD40 domain protein 7 (FBXW7) is a component of the SKP1-CUL1-F-box protein (SCF) complex that mediates the ubiquitination of diverse oncogenic target proteins. The exploration of FBXW7 mutations in human primary cancer has revealed three mutation hotspots at conserved arginine residues (Arg465, Arg479, and ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-19769-1
更新日期:2018-01-31 00:00:00
abstract::Mechanistic disease progression studies using animal models require objective and quantifiable assessment of tissue pathology. Currently quantification relies heavily on staining methods which can be expensive, labor/time-intensive, inconsistent across laboratories and batch, and produce uneven staining that is prone ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-78061-3
更新日期:2020-12-01 00:00:00
abstract::Caterpillars have long been used as models for studying animal defence. Their impressive armour, including flamboyant warning colours, poisonous spines, irritating sprays, and mimicry of plant parts, snakes and bird droppings, has been extensively documented. But research has mainly focused on visual and chemical disp...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep31469
更新日期:2016-08-11 00:00:00
abstract::Structural materials used for safety critical applications require high strength and simultaneously high resistance against crack growth, referred to as damage tolerance. However, the two properties typically exclude each other and research efforts towards ever stronger materials are hampered by drastic loss of fractu...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep33228
更新日期:2016-09-14 00:00:00
abstract::The placenta is an essential organ that is formed during pregnancy and its proper development is critical for embryonic survival. While several animal models have been shown to exhibit some of the pathological effects present in human preeclampsia, these models often do not represent the physiological aspects that hav...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-39426-5
更新日期:2019-02-26 00:00:00
abstract::Quantum walks often provide telling insights about the structure of the system on which they are performed. In [Formula: see text]-symmetric and lossy dimer lattices, the topological properties of the band structure manifest themselves in the quantization of the mean displacement of such a walker. We investigate the f...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-30344-6
更新日期:2018-08-13 00:00:00
abstract::Due to their convergent evolution, dogs have been suggested as a good model for the evolution of human social skills, such as tolerance and cooperativeness. However, recent studies have revealed that wolves (dogs' closest undomesticated relatives) are more tolerant and cooperative with conspecifics than dogs. It is st...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-40468-y
更新日期:2019-03-07 00:00:00
abstract::Erythropoiesis is regulated by the erythropoietin receptor (EpoR) binding to its ligand. The transmembrane domain (TMD) and the juxtamembrane (JM) regions of the EpoR are important for signal transduction across the cell membrane. We report a solution NMR study of the mouse erythropoietin receptor (mEpoR) comprising t...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep13586
更新日期:2015-08-28 00:00:00
abstract::Fatty acid oxidation and subsequent ketogenesis is one of the major mechanisms to maintain hepatic lipid homeostasis under fasting conditions. Fasting hormone glucagon has been shown to stimulate ketone body production through activation of PPARα; however, the signal pathway linking glucagon to PPARα is largely undisc...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep23317
更新日期:2016-03-17 00:00:00