Decoding fMRI activity in the time domain improves classification performance.

Abstract:

:Most current functional Magnetic Resonance Imaging (fMRI) decoding analyses rely on statistical summaries of the data resulting from a deconvolution approach: each stimulation event is associated with a brain response. This standard approach leads to simple learning procedures, yet it is ill-suited for decoding events with short inter-stimulus intervals. In order to overcome this issue, we propose a novel framework that separates the spatial and temporal components of the prediction by decoding the fMRI time-series continuously, i.e. scan-by-scan. The stimulation events can then be identified through a deconvolution of the reconstructed time series. We show that this model performs as well as or better than standard approaches across several datasets, most notably in regimes with small inter-stimuli intervals (3-5s), while also offering predictions that are highly interpretable in the time domain. This opens the way toward analyzing datasets not normally thought of as suitable for decoding and makes it possible to run decoding on studies with reduced scan time.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Loula J,Varoquaux G,Thirion B

doi

10.1016/j.neuroimage.2017.08.018

subject

Has Abstract

pub_date

2018-10-15 00:00:00

pages

203-210

issue

Pt A

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(17)30665-1

journal_volume

180

pub_type

杂志文章
  • Effective connectivity during haptic perception: a study using Granger causality analysis of functional magnetic resonance imaging data.

    abstract::Although it is accepted that visual cortical areas are recruited during touch, it remains uncertain whether this depends on top-down inputs mediating visual imagery or engagement of modality-independent representations by bottom-up somatosensory inputs. Here we addressed this by examining effective connectivity in hum...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.01.044

    authors: Deshpande G,Hu X,Stilla R,Sathian K

    更新日期:2008-05-01 00:00:00

  • The roles of timing and task order during task switching.

    abstract::The neural bases of the different processes involved in task switching remain poorly identified. Whether distinct brain regions are involved according to the overall structure of the task sequence and the predictability of task timing during task switching is unknown. To address this question, we used functional magne...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2002.1169

    authors: Dreher JC,Koechlin E,Ali SO,Grafman J

    更新日期:2002-09-01 00:00:00

  • Oxygen metabolism, oxygen extraction and positron emission tomography: Historical perspective and impact on basic and clinical neuroscience.

    abstract::Oxygen utilization is central to the human brain's high metabolic rate. Measurement of this fundamental process, in both disease and health, has been a focus of research attention over the last 35 years. This review plots the course of the use of oxygen-15 to study regional cerebral oxygen extraction and metabolism us...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuroimage.2011.12.036

    authors: Baron JC,Jones T

    更新日期:2012-06-01 00:00:00

  • Neurite orientation dispersion and density imaging reveals white matter and hippocampal microstructure changes produced by Interleukin-6 in the TgCRND8 mouse model of amyloidosis.

    abstract::Extracellular β-amyloid (Aβ) plaque deposits and inflammatory immune activation are thought to alter various aspects of tissue microstructure, such as extracellular free water, fractional anisotropy and diffusivity, as well as the density and geometric arrangement of axonal processes. Quantifying these microstructural...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.116138

    authors: Colon-Perez LM,Ibanez KR,Suarez M,Torroella K,Acuna K,Ofori E,Levites Y,Vaillancourt DE,Golde TE,Chakrabarty P,Febo M

    更新日期:2019-11-15 00:00:00

  • Layer-specific response properties of the human lateral geniculate nucleus and superior colliculus.

    abstract::The human LGN and SC consist of distinct layers, but their layer-specific response properties remain poorly understood. In this fMRI study, we characterized visual response properties of the magnocellular (M) and parvocellular (P) layers of the human LGN, as well as at different depths in the SC. Results show that fMR...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.02.025

    authors: Zhang P,Zhou H,Wen W,He S

    更新日期:2015-05-01 00:00:00

  • Perception of object motion in three-dimensional space induced by cast shadows.

    abstract::Cast shadows can be salient depth cues in three-dimensional (3D) vision. Using a motion illusion in which a ball is perceived to roll in depth on the bottom or to flow in the front plane depending on the slope of the trajectory of its cast shadow, we investigated cortical mechanisms underlying 3D vision based on cast ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.07.075

    authors: Katsuyama N,Usui N,Nose I,Taira M

    更新日期:2011-01-01 00:00:00

  • Age mediation of frontoparietal activation during visual feature search.

    abstract::Activation of frontal and parietal brain regions is associated with attentional control during visual search. We used fMRI to characterize age-related differences in frontoparietal activation in a highly efficient feature search task, detection of a shape singleton. On half of the trials, a salient distractor (a color...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.07.053

    authors: Madden DJ,Parks EL,Davis SW,Diaz MT,Potter GG,Chou YH,Chen NK,Cabeza R

    更新日期:2014-11-15 00:00:00

  • Parametric reverse correlation reveals spatial linearity of retinotopic human V1 BOLD response.

    abstract::Many experiments measuring blood oxygen level dependent (BOLD) signal in functional magnetic resonance imaging (fMRI) data assume that the BOLD signal is predominantly linear in space and time. Previous investigations of temporal linearity have reported that the temporal BOLD response contains both linear and nonlinea...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2004.05.012

    authors: Hansen KA,David SV,Gallant JL

    更新日期:2004-09-01 00:00:00

  • Joint analysis of spikes and local field potentials using copula.

    abstract::Recent technological advances, which allow for simultaneous recording of spikes and local field potentials (LFPs) at multiple sites in a given cortical area or across different areas, have greatly increased our understanding of signal processing in brain circuits. Joint analysis of simultaneously collected spike and L...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.03.030

    authors: Hu M,Li M,Li W,Liang H

    更新日期:2016-06-01 00:00:00

  • Task demands modulate sustained and transient neural activity during visual-matching tasks.

    abstract::The extent to which a task demands verbal or non-verbal processing may influence which neural regions underlie performance. In the present study, sustained and transient responses were examined using functional magnetic resonance imaging (fMRI) in conjunction with a mixed blocked/event-related design during three visu...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2004.12.039

    authors: Darcy Burgund E,Lugar HM,Schlaggar BL,Petersen SE

    更新日期:2005-04-01 00:00:00

  • Effects of language experience: neural commitment to language-specific auditory patterns.

    abstract::Linguistic experience alters an individual's perception of speech. We here provide evidence of the effects of language experience at the neural level from two magnetoencephalography (MEG) studies that compare adult American and Japanese listeners' phonetic processing. The experimental stimuli were American English /ra...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.neuroimage.2005.02.040

    authors: Zhang Y,Kuhl PK,Imada T,Kotani M,Tohkura Y

    更新日期:2005-07-01 00:00:00

  • Connectivity-behavior analysis reveals that functional connectivity between left BA39 and Broca's area varies with reading ability.

    abstract::Correlations between temporal fluctuations in MRI signals may reveal functional connectivity between brain regions within individual subjects. Such correlations would be especially useful indices of functional connectivity if they covary with behavioral performance or other subject variables. This study investigated w...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2005.12.040

    authors: Hampson M,Tokoglu F,Sun Z,Schafer RJ,Skudlarski P,Gore JC,Constable RT

    更新日期:2006-06-01 00:00:00

  • White matter microstructural properties correlate with sensorimotor synchronization abilities.

    abstract::Sensorimotor synchronization (SMS) to an external auditory rhythm is a developed ability in humans, particularly evident in dancing and singing. This ability is typically measured in the lab via a simple task of finger tapping to an auditory beat. While simplistic, there is some evidence that poor performance on this ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.05.022

    authors: Blecher T,Tal I,Ben-Shachar M

    更新日期:2016-09-01 00:00:00

  • Model-free analysis of brain fMRI data by recurrence quantification.

    abstract::We propose a novel model-free univariate strategy for functional magnetic resonance imaging (fMRI) studies based upon recurrence quantification analysis (RQA). RQA is an auto-regressive method, which identifies recurrences in signals without any a priori assumptions. The performance of RQA is compared to that of univa...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.05.025

    authors: Bianciardi M,Sirabella P,Hagberg GE,Giuliani A,Zbilut JP,Colosimo A

    更新日期:2007-08-15 00:00:00

  • Manganese-enhanced magnetic resonance imaging of hypoxic-ischemic brain injury in the neonatal rat.

    abstract::Hypoxic-ischemic injury (HI) to the neonatal brain results in delayed neuronal death with accompanying inflammation for days after the initial insult. The aim of this study was to depict delayed neuronal death after HI using Manganese-enhanced MRI (MEMRI) and to evaluate the specificity of MEMRI in detection of cells ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.12.007

    authors: Widerøe M,Olsen Ø,Pedersen TB,Goa PE,Kavelaars A,Heijnen C,Skranes J,Brubakk AM,Brekken C

    更新日期:2009-04-15 00:00:00

  • Functional organization of human auditory cortex: investigation of response latencies through direct recordings.

    abstract::The model for functional organization of human auditory cortex is in part based on findings in non-human primates, where the auditory cortex is hierarchically delineated into core, belt and parabelt fields. This model envisions that core cortex directly projects to belt, but not to parabelt, whereas belt regions are a...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.07.004

    authors: Nourski KV,Steinschneider M,McMurray B,Kovach CK,Oya H,Kawasaki H,Howard MA 3rd

    更新日期:2014-11-01 00:00:00

  • An fMRI study of cytokine-induced depressed mood and social pain: the role of sex differences.

    abstract::Although research has demonstrated a relationship between proinflammatory cytokine activity and depressive symptoms, the neurocognitive processes underlying this relationship have remained largely unexplored. Here, we examined the effect of proinflammatory cytokine activation on the neural correlates of socially painf...

    journal_title:NeuroImage

    pub_type: 杂志文章,随机对照试验

    doi:10.1016/j.neuroimage.2009.04.040

    authors: Eisenberger NI,Inagaki TK,Rameson LT,Mashal NM,Irwin MR

    更新日期:2009-09-01 00:00:00

  • Neurovascular coupling is impaired in cerebral microangiopathy--An event-related Stroop study.

    abstract::Small-vessel disease or cerebral microangiopathy is a common finding in elderly people leading finally to subcortical ischemic vascular dementia. Because cerebral microangiopathy impairs vascular reactivity and affects mainly the frontal lobes, we hypothesized that brain activation decreases during an event-related co...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2006.09.001

    authors: Schroeter ML,Cutini S,Wahl MM,Scheid R,Yves von Cramon D

    更新日期:2007-01-01 00:00:00

  • The preparation and readiness for voluntary movement: a high-field event-related fMRI study of the Bereitschafts-BOLD response.

    abstract::Activity within motor areas of the cortex begins to increase 1 to 2 s prior to voluntary self-initiated movement (termed the Bereitschaftspotential or readiness potential). There has been much speculation and debate over the precise source of this early premovement activity as it is important for understanding the rol...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/s1053-8119(03)00291-x

    authors: Cunnington R,Windischberger C,Deecke L,Moser E

    更新日期:2003-09-01 00:00:00

  • Language in context: emergent features of word, sentence, and narrative comprehension.

    abstract::Context exerts a powerful effect on cognitive performance and is clearly important for language processing, where lexical, sentential, and narrative contexts should differentially engage neural systems that support lexical, compositional, and discourse level semantics. Equally important, but thus far unexplored, is th...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2004.12.013

    authors: Xu J,Kemeny S,Park G,Frattali C,Braun A

    更新日期:2005-04-15 00:00:00

  • Localization of electrophysiological responses to semantic and syntactic anomalies in language comprehension with MEG.

    abstract::Syntactically and semantically anomalous words encountered during sentence comprehension are known to elicit dissociable electrophysiological responses, which are thought to reflect distinct aspects of language processing. However, the sources of these responses have not been well characterized. We used beamforming an...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.11.016

    authors: Kielar A,Panamsky L,Links KA,Meltzer JA

    更新日期:2015-01-15 00:00:00

  • Investigating the effect of blood susceptibility on phase contrast in the human brain.

    abstract::Recent work has shown a dramatic contrast between GM and WM in gradient echo phase images at high field (7 T). Although this contrast is key to the exploitation of phase in imaging normal and pathological tissue, its origin remains contentious. Several sources for this contrast have been considered including iron cont...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.12.052

    authors: Petridou N,Wharton SJ,Lotfipour A,Gowland P,Bowtell R

    更新日期:2010-04-01 00:00:00

  • Development of a novel robust measure for interhemispheric synchrony in the neonatal EEG: activation synchrony index (ASI).

    abstract::The degree of interhemispheric synchrony in the neonatal EEG assessment refers to the co-occurrence of activity bouts during quiet sleep or burst suppression, and it has been widely considered as a key component in assessing background activity. However, no objective measures have been published for measuring it, and ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.12.017

    authors: Räsänen O,Metsäranta M,Vanhatalo S

    更新日期:2013-04-01 00:00:00

  • The relationship between BOLD and neural activity arises from temporally sparse events.

    abstract::Resting state functional magnetic resonance (rs-fMRI) imaging offers insights into how different brain regions are connected into functional networks. It was recently shown that networks that are almost identical to the ones created from conventional correlation analysis can be obtained from a subset of high-amplitude...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.116390

    authors: Zhang X,Pan WJ,Keilholz SD

    更新日期:2020-02-15 00:00:00

  • Controlling for the effect of arterial-CO2 fluctuations in resting-state fMRI: Comparing end-tidal CO2 clamping and retroactive CO2 correction.

    abstract::The BOLD signal, as the basis of functional MRI, arises from both neuronal and vascular factors, with their respective contributions to resting state-fMRI still unknown. Among the factors contributing to "physiological noise", dynamic arterial CO2 fluctuations constitutes the strongest and the most widespread modulato...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.116874

    authors: Golestani AM,Chen JJ

    更新日期:2020-08-01 00:00:00

  • Perspectives of B-mode transcranial ultrasound.

    abstract::Transcranial color coded sonography has proved valuable in the diagnostic work-up of cerebrovascular disorders in adults. More recently, evidences have converged that transcranial sonography is also useful in the diagnosis of brain parenchymal disorders. Here, a new field of application is the visualization of signal ...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1006/nimg.2001.1014

    authors: Berg D,Becker G

    更新日期:2002-03-01 00:00:00

  • Imagined locomotion in the blind: an fMRI study.

    abstract::Functional magnetic resonance imaging (fMRI) in sighted individuals previously showed parahippocampal and fusiform activations during locomotor imagery, which were interpreted to reflect visuospatial navigation. Concurrent deactivations of multisensory vestibular and somatosensory cortical areas may reflect suppressio...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.11.029

    authors: Deutschländer A,Stephan T,Hüfner K,Wagner J,Wiesmann M,Strupp M,Brandt T,Jahn K

    更新日期:2009-03-01 00:00:00

  • Longitudinal stability of MRI for mapping brain change using tensor-based morphometry.

    abstract::Measures of brain change can be computed from sequential MRI scans, providing valuable information on disease progression, e.g., for patient monitoring and drug trials. Tensor-based morphometry (TBM) creates maps of these brain changes, visualizing the 3D profile and rates of tissue growth or atrophy, but its sensitiv...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2005.12.013

    authors: Leow AD,Klunder AD,Jack CR Jr,Toga AW,Dale AM,Bernstein MA,Britson PJ,Gunter JL,Ward CP,Whitwell JL,Borowski BJ,Fleisher AS,Fox NC,Harvey D,Kornak J,Schuff N,Studholme C,Alexander GE,Weiner MW,Thompson PM,ADNI Pre

    更新日期:2006-06-01 00:00:00

  • Dynamic neural mechanisms underlie race disparities in social cognition.

    abstract::Race disparities in behavior may emerge in several ways, some of which may be independent of implicit bias. To mitigate the pernicious effects of different race disparities for racial minorities, we must understand whether they are rooted in perceptual, affective, or cognitive processing with regard to race perception...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.02.043

    authors: Cassidy BS,Krendl AC

    更新日期:2016-05-15 00:00:00

  • The development of brain white matter microstructure.

    abstract::Throughout infancy, childhood, and adolescence, our brains undergo remarkable changes. Processes including myelination and synaptogenesis occur rapidly across the first 2-3 years of life, and ongoing brain remodeling continues into young adulthood. Studies have sought to characterize the patterns of structural brain d...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuroimage.2017.12.097

    authors: Lebel C,Deoni S

    更新日期:2018-11-15 00:00:00