Copy number variation analysis in adults with catatonia confirms haploinsufficiency of SHANK3 as a predisposing factor.

Abstract:

BACKGROUND:Catatonia is a motor dysregulation syndrome co-occurring with a variety of psychiatric and medical disorders. Response to treatment with benzodiazepines and electroconvulsive therapy suggests a neurobiological background. The genetic etiology however remains largely unexplored. Copy Number Variants (CNV), known to predispose to neurodevelopmental disorders, may play a role in the etiology of catatonia. METHODS:This study is exploring the genetic field of catatonia through CNV analysis in a cohort of psychiatric patients featuring intellectual disability and catatonia. Fifteen adults admitted to a psychiatric inpatient unit and diagnosed with catatonia were selected for array Comparative Genomic Hybridization analysis at 200 kb resolution. We introduced a CNV interpretation algorithm to define detected CNVs as benign, unclassified, likely pathogenic or causal with regard to catatonia. RESULTS:Co-morbid psychiatric diagnoses in these patients were autism, psychotic or mood disorders. Eight patients were found to carry rare CNVs, which could not be classified as benign, comprising 6 duplications and 2 deletions. Microdeletions on 22q13.3, considered causal for catatonia, were detected in 2 patients. Duplications on 16p11.2 and 22q11.2 were previously implicated in psychiatric disorders, but not in catatonia, and were therefore considered likely pathogenic. Driven by the identification of a rare 14q11.2 duplication in one catatonic patient, additional patients with overlapping duplications were gathered to delineate a novel susceptibility locus for intellectual disability and psychiatric disorders on 14q11.2, harboring the gene SUPT16H. Three remaining variants respectively on 2q36.1, 16p13.13 and 17p13.3 were considered variants of unknown significance. CONCLUSION:The identification of catatonia-related copy number changes in this study, underscores the importance of genetic research in patients with catatonia. We confirmed that 22q13.3 deletions, affecting the gene SHANK3, predispose to catatonia, and we uncover 14q11.2 duplications as a novel susceptibility factor for intellectual and psychiatric disorders.

journal_name

Eur J Med Genet

authors

Breckpot J,Vercruyssen M,Weyts E,Vandevoort S,D'Haenens G,Van Buggenhout G,Leempoels L,Brischoux-Boucher E,Van Maldergem L,Renieri A,Mencarelli MA,D'Angelo C,Mericq V,Hoffer MJ,Tauber M,Molinas C,Castiglioni C,Brison N

doi

10.1016/j.ejmg.2016.08.003

subject

Has Abstract

pub_date

2016-09-01 00:00:00

pages

436-43

issue

9

eissn

1769-7212

issn

1878-0849

pii

S1769-7212(16)30125-2

journal_volume

59

pub_type

杂志文章
  • Impact of genotype on neutropenia in a large cohort of Serbian patients with glycogen storage disease type Ib.

    abstract:BACKGROUND:Glycogen storage disease type Ib (GSD-Ib) is an inherited metabolic disorder caused by autosomal recessive mutations in SLC37A4 coding for the glucose-6-phosphate transporter. Neutropenia represents major feature of GSD-Ib along with metabolic disturbances. Previous research in GSD-Ib patients did not reveal...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2019.103767

    authors: Sarajlija A,Djordjevic M,Kecman B,Skakic A,Pavlovic S,Pasic S,Stojiljkovic M

    更新日期:2020-03-01 00:00:00

  • A survey of undetected, clinically relevant chromosome abnormalities when replacing postnatal karyotyping by Whole Genome Sequencing.

    abstract::Whole genome sequencing (WGS) holds the potential to identify pathogenic gene mutations, copy number variation, uniparental disomy and structural rearrangements in a single genetic test. With its high diagnostic yield and decreasing costs, the question arises whether WGS can serve as a single test for all referrals to...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2018.09.010

    authors: Hochstenbach R,van Binsbergen E,Schuring-Blom H,Buijs A,Ploos van Amstel HK

    更新日期:2019-09-01 00:00:00

  • Dilated cardiomyopathy in a patient with autosomal dominant EEF1A2-related neurodevelopmental disorder.

    abstract::The EEF1A2 gene encodes eukaryotic translation elongation factor 1α2, an integral component of the elongation factor complex. Heterozygous pathogenic variants in EEF1A2 are associated with neurodevelopmental disorders characterized by epilepsy, global developmental delay, and autism. To date, dilated cardiomyopathy ha...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2020.104121

    authors: Kaneko M,Rosser T,Raca G

    更新日期:2021-01-01 00:00:00

  • First case of deletion of the faciogenital dysplasia 1 (FGD1) gene in a patient with Aarskog-Scott syndrome.

    abstract::Mutations within the faciogenital dysplasia 1 (FGD1) gene in individuals with clinical features of Aarskog-Scott syndrome (AAS) include missense mutations and insertions and deletions that result in frameshifts and premature terminations. Whole gene deletion and duplication represent other mutational possibilities not...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2008.12.001

    authors: Bedoyan JK,Friez MJ,DuPont B,Ahmad A

    更新日期:2009-07-01 00:00:00

  • Small 7p22.3 microdeletion: Case report of Snx8 haploinsufficiency and neurological findings.

    abstract::Some cases of chromosome 7p22.3 deletions have been reported, but the genotype-phenotype correlation is still uncertain. Neurodevelopmental delay and heart anomalies have been recorded as the most recurrent defects. We describe the clinical features of a four-year-old male child with a 139 kb deletion at 7p22.3 involv...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2019.103772

    authors: Mastromoro G,Capalbo A,Guido CA,Torres B,Fabbretti M,Traversa A,Giancotti A,Ventriglia F,Bernardini L,Spalice A,Pizzuti A

    更新日期:2020-04-01 00:00:00

  • Deletion of the AP1S2 gene in a child with psychomotor delay and hypotonia.

    abstract::We identified a 495 Kb interstitial deletion of chromosome Xp22.2, centered on the AP1S2 gene, by means of oligonucleotide array comparative genomic hybridisation (array-CGH) in a child with marked hypotonia in the first months of life, psychomotor retardation, severely delayed walking and speech development, and unsp...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2011.12.001

    authors: Ballarati L,Cereda A,Caselli R,Maitz S,Russo S,Selicorni A,Larizza L,Giardino D

    更新日期:2012-02-01 00:00:00

  • A further contribution to the delineation of the 17q21.31 microdeletion syndrome: central nervous involvement in two Italian patients.

    abstract::The 17q21.31 microdeletion syndrome is a genetic disorder characterized by intellectual disability, facial dysmorphisms and a typical behavioral phenotype. Patients are usually described as friendly and cooperative but they can also show behavioral problems such as hyperactivity, bad humor, temper tantrums and poor in...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2012.04.010

    authors: Terrone G,D'Amico A,Imperati F,Carella M,Palumbo O,Gentile M,Canani RB,Melis D,Romano A,Parente I,Riccitelli M,Del Giudice E

    更新日期:2012-08-01 00:00:00

  • Molecular genetic analysis of trinucleotide repeat disorders (TRDs) in Indian population and application of repeat primed PCR.

    abstract::Trinucleotide repeat disorders (TRDs) are a set of genetic disorders caused by trinucleotide repeat expansion in certain genes that exceed the normal, stable threshold, which varies from gene to gene. A dynamic mutation in a healthy gene may increase the repeat count and result in a defective gene. At present there ar...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2014.12.010

    authors: Das Bhowmik A,Rangaswamaiah S,Srinivas G,Dalal AB

    更新日期:2015-03-01 00:00:00

  • Neuroblastoma Amplified Sequence (NBAS) mutation in recurrent acute liver failure: Confirmatory report in a sibship with very early onset, osteoporosis and developmental delay.

    abstract:BACKGROUND:Recently, biallelic mutations in the Neuroblastoma Amplified Sequence NBAS gene have been identified in ten patients that present recurrent acute liver failure (RALF) in early infancy. In addition to severe liver dysfunction, some of these individuals also suffered from other comorbidities including cardiomy...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章,评审

    doi:10.1016/j.ejmg.2015.11.005

    authors: Capo-Chichi JM,Mehawej C,Delague V,Caillaud C,Khneisser I,Hamdan FF,Michaud JL,Kibar Z,Mégarbané A

    更新日期:2015-12-01 00:00:00

  • A TNNI2 mutation in a family with distal arthrogryposis type 2B.

    abstract::Linkage mapping in a three-generation family with a distal arthrogryposis (DA) phenotype intermediate between DA2A and DA1 indicated linkage to 11p15.5 but not 9p13. Follow up DNA sequencing of the TNNI2 gene detected a three base pair deletion that would be predicted to result in the deletion of a glutamic acid at co...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2005.06.003

    authors: Shrimpton AE,Hoo JJ

    更新日期:2006-03-01 00:00:00

  • Wiedemann-Steiner syndrome: Novel pathogenic variant and review of literature.

    abstract::Wiedemann-Steiner syndrome (WDSTS) is a very rare genetic disorder characterized by short stature, intellectual disability and distinctive facial appearance. We present a five-year-old boy who was diagnosed with WDSTS based on identification of a novel de novo pathogenic variant in the KMT2A gene (OMIM: 159555) by Who...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章,评审

    doi:10.1016/j.ejmg.2017.03.006

    authors: Aggarwal A,Rodriguez-Buritica DF,Northrup H

    更新日期:2017-06-01 00:00:00

  • Under the mask of Kabuki syndrome: Elucidation of genetic-and phenotypic heterogeneity in patients with Kabuki-like phenotype.

    abstract::Kabuki syndrome is mainly caused by dominant de-novo pathogenic variants in the KMT2D and KDM6A genes. The clinical features of this syndrome are highly variable, making the diagnosis of Kabuki-like phenotypes difficult, even for experienced clinical geneticists. Herein we present molecular genetic findings of causal ...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2018.01.005

    authors: Paderova J,Drabova J,Holubova A,Vlckova M,Havlovicova M,Gregorova A,Pourova R,Romankova V,Moslerova V,Geryk J,Norambuena P,Krulisova V,Krepelova A,Macek M Sr,Macek M Jr

    更新日期:2018-06-01 00:00:00

  • Two siblings with a novel nonsense variant provide further delineation of the spectrum of recessive KLHL7 diseases.

    abstract::Mutations in Kelch-like family member 7 (KLHL7) have recently been described as a cause of a constellation of clinical findings with descriptions of both a Crisponi syndrome (CS)/cold-induced sweating syndrome type 1 (CISS1)-like, as well as a Bohring-Opitz syndrome (BOS)-like presentation. Here we report two siblings...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2018.10.003

    authors: Jeffries L,Olivieri JE,Ji W,Spencer-Manzon M,Bale A,Konstantino M,Lakhani SA

    更新日期:2019-09-01 00:00:00

  • Exome sequencing identifies a novel homozygous variant in NDRG4 in a family with infantile myofibromatosis.

    abstract::Infantile myofibromatosis (IM) is a rare disorder characterized by the development of benign tumors in the skin, muscle, bone, and viscera. The incidence is 1/150,000 live births and the disease is the most common cause of fibrous tumors in infancy. Cases which lack visceral involvement generally have a more benign co...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2014.08.010

    authors: Linhares ND,Freire MC,Cardenas RG,Pena HB,Bahia M,Pena SD

    更新日期:2014-11-01 00:00:00

  • Malpuech syndrome: broadening the clinical spectrum and molecular analysis by array-CGH.

    abstract::We report on a patient with mental and growth retardation, bilateral cleft lip and palate, hypertelorism, ptosis, hearing loss and mild epispadias, suggestive of Malpuech syndrome. High-resolution karyotype and microarray-CGH using an oligonucleotide array with 75Kb oligo's were normal, excluding Wolf-Hirschhorn syndr...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2006.10.004

    authors: Priolo M,Ciccone R,Bova I,Campolo G,Laganà C,Zuffardi O

    更新日期:2007-03-01 00:00:00

  • Early manifestations of epileptic encephalopathy, brain atrophy, and elevation of serum neuron specific enolase in a boy with beta-propeller protein-associated neurodegeneration.

    abstract::Mutations in WDR45 are responsible for beta-propeller protein-associated neurodegeneration (BPAN), which is an X-linked form of neurodegeneration with brain iron accumulation. BPAN mainly affects females and is characterized by seizures and developmental delay or intellectual disability until adolescence or early adul...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2017.07.008

    authors: Takano K,Goto K,Motobayashi M,Wakui K,Kawamura R,Yamaguchi T,Fukushima Y,Kosho T

    更新日期:2017-10-01 00:00:00

  • Phenotypic variability in two patients with tumor necrosis factor receptor associated periodic fever syndrome emphasizes a rare manifestation: Immunoglobulin A nephropathy.

    abstract::Tumor necrosis factor receptor associated periodic fever syndrome (TRAPS) is caused by heterozygote mutations in TNFRSF1A, characterized by recurrent inflammatory attacks. In this report, we described two patients with different heterozygote mutations in TNFRSF1A. Patient 1, a 15-year-old male, had suffered from recur...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2019.103780

    authors: Balci S,Kisla Ekinci RM,Melek E,Atmis B,Bisgin A,Yilmaz M

    更新日期:2020-04-01 00:00:00

  • Revised Danish guidelines for the cancer surveillance of patients with Cowden Syndrome.

    abstract:INTRODUCTION:Cowden syndrome is a cancer predisposition syndrome caused by pathogenic variants in PTEN. The affected patients possess an increased risk of breast, thyroid, renal, colorectal, endometrial cancers as well as malignant melanoma. Thus prophylactic surveillance and follow up is crucial for these patients. M...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章,评审

    doi:10.1016/j.ejmg.2020.103873

    authors: Smerdel MP,Skytte AB,Jelsig AM,Ebbehøj E,Stochholm K

    更新日期:2020-05-01 00:00:00

  • Gastrointestinal problems in 15q duplication syndrome.

    abstract::Chromosome 15q duplication syndrome (Dup15q syndrome) is a neurodevelopmental disorder involving copy number gains of the maternal chromosome 15q11.2-q13 region, characterized by intellectual disability, developmental delay, autism spectrum disorder (ASD), and epilepsy. Gastrointestinal (GI) problems in Dup15q syndrom...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2014.12.012

    authors: Shaaya EA,Pollack SF,Boronat S,Davis-Cooper S,Zella GC,Thibert RL

    更新日期:2015-03-01 00:00:00

  • A fetal case of microphthalmia and limb anomalies with abnormal neuronal migration associated with SMOC1 biallelic variants.

    abstract::Microphthalmia with limb anomalies (MLA, OMIM, 206920) is a rare autosomal-recessive disease caused by biallelic pathogenic variants in the SMOC1 gene. It is characterized by ocular disorders (microphtalmia or anophtalmia) and limb anomalies (oligodactyly, syndactyly, and synostosis of the 4th and 5th metacarpals), va...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2018.11.012

    authors: Mancini C,Zonta A,Botta G,Breda Klobus A,Valbonesi S,Pasini B,Giorgio E,Viora E,Brusco A,Brussino A

    更新日期:2019-11-01 00:00:00

  • Similar prevalence of founder BRCA1 and BRCA2 mutations among Ashkenazi and non-Ashkenazi men with breast cancer: evidence from 261 cases in Israel, 1976-1999.

    abstract::To evaluate the potential contribution of mutations in the BRCA1 and BRCA2 genes to male breast cancer (MBC), we expanded a previous study to screen a total of 261 Israeli men diagnosed with breast carcinoma. A total of 21 BRCA2 6174delT and 8 BRCA1 185delAG mutations were found. Similar frequencies of BRCA1 and BRCA2...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2007.11.001

    authors: Chodick G,Struewing JP,Ron E,Rutter JL,Iscovich J

    更新日期:2008-03-01 00:00:00

  • Endocervical trophoblast for interrogating the fetal genome and assessing pregnancy health at five weeks.

    abstract::Prenatal testing for fetal genetic traits and risk of obstetrical complications is essential for maternal-fetal healthcare. The migration of extravillous trophoblast (EVT) cells from the placenta into the reproductive tract and accumulation in the cervix offers an exciting avenue for prenatal testing and monitoring pl...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2019.103690

    authors: Kadam L,Jain C,Kohan-Ghadr HR,Krawetz SA,Drewlo S,Armant DR

    更新日期:2019-08-01 00:00:00

  • The impact of thalidomide use in birth defects in Brazil.

    abstract::Although the thalidomide tragedy occurred more than 50 years ago, the medication is still being used worldwide for different reasons, and several aspects regarding its teratogenicity remain unsolved. Despite the strict regulation implemented, new cases of thalidomide embryopathy (TE) are still being registered in Braz...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2016.09.015

    authors: Sales Luiz Vianna F,Kowalski TW,Fraga LR,Sanseverino MT,Schuler-Faccini L

    更新日期:2017-01-01 00:00:00

  • A parallel SNP array study of genomic aberrations associated with mental retardation in patients and general population in Estonia.

    abstract::The increasing use of whole-genome array screening has revealed the important role of DNA copy-number variations in the pathogenesis of neurodevelopmental disorders and several recurrent genomic disorders have been defined during recent years. However, some variants considered to be pathogenic have also been observed ...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2010.11.005

    authors: Männik K,Parkel S,Palta P,Zilina O,Puusepp H,Esko T,Mägi R,Nõukas M,Veidenberg A,Nelis M,Metspalu A,Remm M,Ounap K,Kurg A

    更新日期:2011-03-01 00:00:00

  • Genotype-phenotype correlations of UBA2 mutations in patients with ectrodactyly.

    abstract::Interstitial 19q13.11 deletions are associated with ectrodactyly, which has recently been linked to loss-of-function of the UBA2 gene. We report a boy with a de novo frameshift mutation in UBA2 (c.612delA (p.(Glu205Lysfs*63)), presenting with ectrodactyly of the feet associated with learning difficulties and minor phy...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2020.104009

    authors: Aerden M,Bauters M,Van Den Bogaert K,Vermeesch JR,Holvoet M,Plasschaert F,Devriendt K

    更新日期:2020-11-01 00:00:00

  • Polyalanine repeat expansion mutation of the HOXD13 gene in a Chinese family with unusual clinical manifestations of synpolydactyly.

    abstract::Synpolydactyly (SPD) is an autosomal dominant limb malformation caused by mutations in the gene HOXD13. We investigated a Chinese family in which three individuals across three generations were affected with distinctive limb malformations. We extracted genomic DNA from the affected and three unaffected individuals fro...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2010.10.007

    authors: Gong L,Wang B,Wang J,Yu H,Ma X,Yang J

    更新日期:2011-03-01 00:00:00

  • Targeted carrier screening for four recessive disorders: high detection rate within a founder population.

    abstract::In a genetically isolated community in the Netherlands four severe recessive genetic disorders occur at relatively high frequency (pontocerebellar hypoplasia type 2 (PCH2), fetal akinesia deformation sequence (FADS), rhizomelic chondrodysplasia punctata type 1 (RCDP1), and osteogenesis imperfecta (OI) type IIB/III. Ov...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2015.01.004

    authors: Mathijssen IB,Henneman L,van Eeten-Nijman JM,Lakeman P,Ottenheim CP,Redeker EJ,Ottenhof W,Meijers-Heijboer H,van Maarle MC

    更新日期:2015-03-01 00:00:00

  • Novel truncating and missense variants extending the spectrum of EMC1-related phenotypes, causing autism spectrum disorder, severe global development delay and visual impairment.

    abstract::The EMC1 gene, located on 1p36.13, encodes the subunit 1 of the endoplasmic reticulum-membrane protein complex, a highly conserved and ubiquitous multiprotein transmembrane complex. Pathogenic monoallelic and biallelic variants in EMC1 in humans have been reported only in six families, causing isolated visual impairme...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2020.103897

    authors: Cabet S,Lesca G,Labalme A,Des Portes V,Guibaud L,Sanlaville D,Pons L

    更新日期:2020-06-01 00:00:00

  • Report of a female patient with mental retardation and tall stature due to a chromosomal rearrangement disrupting the OPHN1 gene on Xq12.

    abstract::We report on a patient with mental retardation, seizures and tall stature with advanced bone age in whom a de novo apparently balanced chromosomal rearrangement 46,XX,t(X;9)(q12;p13.3) was identified. Using array CGH on flow-sorted derivative chromosomes (array painting) and subsequent FISH and qPCR analysis, we mappe...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2007.07.003

    authors: Menten B,Buysse K,Vermeulen S,Meersschaut V,Vandesompele J,Ng BL,Carter NP,Mortier GR,Speleman F

    更新日期:2007-11-01 00:00:00

  • A 10 Mb duplication in chromosome band 5q31.3-5q33.1 associated with late-onset lipodystrophy, ichthyosis, epilepsy and glomerulonephritis.

    abstract::We report here a 44 years-old patient with late-onset partial lipodystrophy, mental retardation, epilepsy, ichtyosis and glomerulonephritis, carrying a 10 Mb duplication of the chromosome 5q31.3-5q32.1 region detected by array-CGH. ...

    journal_title:European journal of medical genetics

    pub_type: 杂志文章

    doi:10.1016/j.ejmg.2011.01.005

    authors: Faguer S,De Sandre-Giovannoli A,Hemery M,Lévy N,Lamant L,Arveiler B,Rooryck C,Prouheze C,Vigouroux A,Chauveau D,Calvas P,Chassaing N

    更新日期:2011-05-01 00:00:00