Untargeted Metabolomics Analysis Reveals a Link between ETHE1-Mediated Disruptive Redox State and Altered Metabolic Regulation.

Abstract:

:Defects in the gene encoding the persulfide dioxygenase ETHE1 are known to cause the severe inherited metabolic disorder ethylmalonic encephalopathy (EE). In spite of known clinical characteristics, the molecular mechanisms underlying the ETHE1 deficiency are still obscure. Herein, to further analyze the molecular phenotype of the disease, we applied an untargeted metabolomics approach on cultivated fibroblasts of EE patients for pinpointing alterations in metabolite levels. Metabolites, as direct signatures of biochemical functions, can decipher biochemical pathways involved in the cellular phenotype of patient cells. Using liquid chromatography-mass spectrometry-based untargeted metabolomics, we identified 18 metabolites that have altered levels in fibroblasts from EE patients. Our data demonstrate disrupted redox state in EE patient cells, which is reflected by significantly decreased level of reduced glutathione. Furthermore, the down-regulation of several intermediate metabolites such as the redox cofactors NAD(+) and NADH as well as Krebs cycle intermediates revealed clear alteration in metabolic regulation. Pantothenic acid and several amino acids exhibited decreased levels, whereas the β-citrylglutamate with a putative role in brain development had an increased level in the EE patient cells. These observations indicate the severe impact of ETHE1 deficiency on cellular physiology and redox state, meanwhile suggesting targets for experimental studies on novel treatment options for the devastating metabolic disorder.

journal_name

J Proteome Res

authors

Sahebekhtiari N,Nielsen CB,Johannsen M,Palmfeldt J

doi

10.1021/acs.jproteome.6b00100

subject

Has Abstract

pub_date

2016-05-06 00:00:00

pages

1630-8

issue

5

eissn

1535-3893

issn

1535-3907

journal_volume

15

pub_type

杂志文章
  • Serum Antibody Profile during Colonization of the Mouse Gut by Candida albicans: Relevance for Protection during Systemic Infection.

    abstract::Candida albicans is a commensal microorganism in the oral cavity and gastrointestinal and urogenital tracts of most individuals that acts as an opportunistic pathogen when the host immune response is reduced. Here, we established different immunocompetent murine models to analyze the antibody responses to the C. albic...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00383

    authors: Huertas B,Prieto D,Pitarch A,Gil C,Pla J,Díez-Orejas R

    更新日期:2017-01-06 00:00:00

  • Alterations of Brain Quantitative Proteomics Profiling Revealed the Molecular Mechanisms of Diosgenin against Cerebral Ischemia Reperfusion Effects.

    abstract::Diosgenin (DIO), the starting material for the synthesis of steroidal anti-inflammatory drugs in the pharmaceutical industry, has been previously demonstrated to display pharmaceutical effects against cerebral ischemic reperfusion (I/R). However, the alterations of brain proteome profiles underlying this treatment rem...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00667

    authors: Zhang X,Wang X,Khurm M,Zhan G,Zhang H,Ito Y,Guo Z

    更新日期:2020-03-06 00:00:00

  • NMR-based metabolomic analysis of the molecular pathogenesis of therapy-related myelodysplasia/acute myeloid leukemia.

    abstract::Hematopoietic stem cell transplantation is the oldest and most successful form of stem cell therapy. High dose therapy (HDT) followed by hematopoietic stem cell transplantation allows physicians to administer increased amounts of chemotherapy and/or radiation while minimizing negative side effects such as damage to bl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200200y

    authors: Cano KE,Li L,Bhatia S,Bhatia R,Forman SJ,Chen Y

    更新日期:2011-06-03 00:00:00

  • Proteome analysis of cold acclimation in sunflower.

    abstract::Cold acclimation is the phenomenon in which plants are exposed to low, but nonfreezing, temperatures before exposure to drastic temperatures. To investigate how sunflower plants adjust their metabolism during cold treatment, a comparative proteomic approach, based on spectral counting data, was adopted to identify dif...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr101137q

    authors: Balbuena TS,Salas JJ,Martínez-Force E,Garcés R,Thelen JJ

    更新日期:2011-05-06 00:00:00

  • Protein biomarkers for in vitro testing of embryotoxicity.

    abstract::There are new challenges for hazard and risk assessment in the chemical industry with regard to REACH legislation in Europe and related activities in the U.S. and Japan, which require the development of novel in vitro models for the molecular characterization of drug- or chemical-related effects replacing conventional...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100514e

    authors: Groebe K,Hayess K,Klemm-Manns M,Schwall G,Wozny W,Steemans M,Peters AK,Sastri C,Jaeckel P,Stegmann W,Zengerling H,Schopf R,Poznanovic S,Stummann TC,Seiler A,Spielmann H,Schrattenholz A

    更新日期:2010-11-05 00:00:00

  • Multiplexed Quantitative Proteomic Analysis of HEK293 Provides Insights into Molecular Changes Associated with the Cell Density Effect, Transient Transfection, and Virus-Like Particle Production.

    abstract::The production of virus-like particles (VLPs) has gained importance over the last few years owing to the benefits they provide compared to conventional vaccines. The biopharmaceutical industry is currently searching for safer candidates based on VLPs for new and existing vaccines and implementing new methods of manufa...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00601

    authors: Lavado-García J,Jorge I,Cervera L,Vázquez J,Gòdia F

    更新日期:2020-03-06 00:00:00

  • A simple solid phase mass tagging approach for quantitative proteomics.

    abstract::New mass-tagging reagents for quantitative proteomics measurements have been designed using solid phase peptide synthesis technology. The solid phase mass tags have been used to accurately measure the relative amounts of cysteine-containing peptides in model peptide mixtures as well as in mixtures of tryptic digests i...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr034081k

    authors: Shi Y,Xiang R,Crawford JK,Colangelo CM,Horváth C,Wilkins JA

    更新日期:2004-01-01 00:00:00

  • Analysis of the pancreatic low molecular weight proteome in an animal model of acute pancreatitis.

    abstract::We used a peptidomic approach for the analysis of the low molecular weight proteome in rat pancreatic tissue extracts. The goal was to develop a method that allows identifying endogenous peptides produced in the pancreas in the course of acute pancreatitis. The workflow combines peptides enrichment by centrifugal ultr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr1002627

    authors: Lassout O,Pastor CM,Fétaud-Lapierre V,Hochstrasser DF,Frossard JL,Lescuyer P

    更新日期:2010-09-03 00:00:00

  • Fecal Metabolomics as a Novel Noninvasive Method for Short-Term Stress Monitoring in Beef Cattle.

    abstract::Traditional measures of short-term stress response such as fecal glucocorticoid metabolites (FGM) are widely used in controlled settings to quantify the intensity of stimulation to which cattle are exposed. However, FGMs present several methodological and interpretation pitfalls when applied on animals in free-ranging...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00655

    authors: Valerio A,Casadei L,Giuliani A,Valerio M

    更新日期:2020-02-07 00:00:00

  • IDAWG: Metabolic incorporation of stable isotope labels for quantitative glycomics of cultured cells.

    abstract::Robust quantification is an essential component of comparative -omic strategies. In this regard, glycomics lags behind proteomics. Although various isotope-tagging and direct quantification methods have recently enhanced comparative glycan analysis, a cell culture labeling strategy, that could provide for glycomics th...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8010028

    authors: Orlando R,Lim JM,Atwood JA 3rd,Angel PM,Fang M,Aoki K,Alvarez-Manilla G,Moremen KW,York WS,Tiemeyer M,Pierce M,Dalton S,Wells L

    更新日期:2009-08-01 00:00:00

  • Feasibility of detecting prostate cancer by ultraperformance liquid chromatography-mass spectrometry serum metabolomics.

    abstract::Prostate cancer (PCa) is the second leading cause of cancer-related mortality in men. The prevalent diagnosis method is based on the serum prostate-specific antigen (PSA) screening test, which suffers from low specificity, overdiagnosis, and overtreatment. In this work, untargeted metabolomic profiling of age-matched ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500409q

    authors: Zang X,Jones CM,Long TQ,Monge ME,Zhou M,Walker LD,Mezencev R,Gray A,McDonald JF,Fernández FM

    更新日期:2014-07-03 00:00:00

  • IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.

    abstract::Differentiating and quantifying protein differences in complex samples produces significant challenges in sensitivity and specificity. Label-free quantification can draw from two different information sources: precursor intensities and spectral counts. Intensities are accurate for calculating protein relative abundanc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400438q

    authors: Chen YY,Chambers MC,Li M,Ham AJ,Turner JL,Zhang B,Tabb DL

    更新日期:2013-09-06 00:00:00

  • Global Analysis of Protein Lysine Succinylation Profiles and Their Overlap with Lysine Acetylation in the Marine Bacterium Vibrio parahemolyticus.

    abstract::Protein lysine acylation, including acetylation and succinylation, has been found to be a major post-translational modification (PTM) and is associated with the regulation of cellular processes that are widespread in bacteria. Vibrio parahemolyticus is a model marine bacterium that causes seafood-borne illness in huma...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00485

    authors: Pan J,Chen R,Li C,Li W,Ye Z

    更新日期:2015-10-02 00:00:00

  • Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield.

    abstract::The solventogenic bacterium Clostridium acetobutylicum is an important species of the Clostridium community. To develop a fundamental tool that is useful for biological studies of C. acetobutylicum, we established a high resolution proteome reference map for this species. We identified 1206 spots representing 564 diff...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9012078

    authors: Mao S,Luo Y,Zhang T,Li J,Bao G,Zhu Y,Chen Z,Zhang Y,Li Y,Ma Y

    更新日期:2010-06-04 00:00:00

  • Mapping post-translational modifications of mammalian testicular specific histone variant TH2B in tetraploid and haploid germ cells and their implications on the dynamics of nucleosome structure.

    abstract::Histones regulate a variety of chromatin templated events by their post-translational modifications (PTMs). Although there are extensive reports on the PTMs of canonical histones, the information on the histone variants remains very scanty. Here, we report the identification of different PTMs, such as acetylation, met...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500597a

    authors: Pentakota SK,Sandhya S,P Sikarwar A,Chandra N,Satyanarayana Rao MR

    更新日期:2014-12-05 00:00:00

  • Western honeybee drones and workers (Apis mellifera ligustica) have different olfactory mechanisms than eastern honeybees (Apis cerana cerana).

    abstract::The honeybees Apis mellifera ligustica (Aml) and Apis cerana cerana (Acc) are two different western and eastern bee species that evolved in distinct ecologies and developed specific antennal olfactory systems for their survival. Knowledge of how their antennal olfactory systems function in regards to the success of ea...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300298w

    authors: Woltedji D,Song F,Zhang L,Gala A,Han B,Feng M,Fang Y,Li J

    更新日期:2012-09-07 00:00:00

  • The proapoptotic C16-ceramide-dependent pathway requires the death-promoting factor Btf in colon adenocarcinoma cells.

    abstract::Ceramides are central molecules in sphingolipid metabolism. They are involved in the regulation of cancer-cell growth, differentiation, senescence and apoptosis. To better understand how these secondary messengers induce their biological effects, adenocarcinoma cells (HCT116) were treated with exogenous long-chain cer...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9005316

    authors: Rénert AF,Leprince P,Dieu M,Renaut J,Raes M,Bours V,Chapelle JP,Piette J,Merville MP,Fillet M

    更新日期:2009-10-01 00:00:00

  • ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data.

    abstract::ProXL is a Web application and accompanying database designed for sharing, visualizing, and analyzing bottom-up protein cross-linking mass spectrometry data with an emphasis on structural analysis and quality control. ProXL is designed to be independent of any particular software pipeline. The import process is simpli...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00274

    authors: Riffle M,Jaschob D,Zelter A,Davis TN

    更新日期:2016-08-05 00:00:00

  • Highly altered protein expression profile in the adriamycin resistant MCF-7 cell line.

    abstract::The protein expression pattern in the cytosol fraction of the adriamycin resistant MCF-7 cell line (MCF-7/ADR) was compared to that of the parental MCF-7 cell line using two-dimensional gel electrophoresis and mass spectrometry. Twenty proteins with altered abundances were identified and studied in MCF-7/ADR. Both up ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0340577

    authors: Gehrmann ML,Fenselau C,Hathout Y

    更新日期:2004-05-01 00:00:00

  • Proteome analysis of silkworm, Bombyx mori, larval gonads: characterization of proteins involved in sexual dimorphism and gametogenesis.

    abstract::Sexual dimorphism is initialed by the components of the sex determination pathway and is most evident in gonads and germ cells. Although striking dimorphic expressions have been detected at the transcriptional level between the silkworm larval testis and the ovary, the sex-dimorphic expressions at the protein level ha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300920z

    authors: Chen JE,Li JY,You ZY,Liu LL,Liang JS,Ma YY,Chen M,Zhang HR,Jiang ZD,Zhong BX

    更新日期:2013-06-07 00:00:00

  • Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses.

    abstract::To cope with sudden changes in the external environment, the budding yeast Saccharomyces cerevisiae orchestrates a multifaceted response that spans many levels of physiology. Several studies have interrogated the transcriptome response to endoplasmic reticulum (ER) stress and the role of regulators such as the Ire1 ki...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00253

    authors: MacGilvray ME,Shishkova E,Place M,Wagner ER,Coon JJ,Gasch AP

    更新日期:2020-08-07 00:00:00

  • Multivariate data analysis of two-dimensional gel electrophoresis protein patterns from few samples.

    abstract::One application of 2D gel electrophoresis is to reveal differences in protein pattern between two or more groups of individuals, attributable to their group membership. Multivariate data analytical methods are useful in pinpointing the spots relevant for discrimination by focusing not only on single spot differences, ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr700800s

    authors: Jensen KN,Jessen F,Jørgensen BM

    更新日期:2008-03-01 00:00:00

  • Metabonomics approach to understanding acute and chronic stress in rat models.

    abstract::The effects of acute and chronic stress on the production of systemic metabolites were investigated in male Sprague-Dawley (SD) rats. Metabolites excreted in urine were analyzed using GC/MS in conjunction with multivariate and univariate statistical techniques. SD rats were subjected to two kinds of acute stress and c...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr801086k

    authors: Wang X,Zhao T,Qiu Y,Su M,Jiang T,Zhou M,Zhao A,Jia W

    更新日期:2009-05-01 00:00:00

  • Shotgun protein profile of human adipose tissue and its changes in relation to systemic amyloidoses.

    abstract::In systemic amyloidosis, accumulation of misfolded proteins as extracellular amyloid fibrils in tissues causes severe organ dysfunction, but the molecular events of tissue damage related to amyloid deposition are still largely unknown. Through the use of the MudPIT proteomic approach, comprehensive protein profiles of...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400583h

    authors: Brambilla F,Lavatelli F,Di Silvestre D,Valentini V,Palladini G,Merlini G,Mauri P

    更新日期:2013-12-06 00:00:00

  • Alterations of histone H1 phosphorylation during bladder carcinogenesis.

    abstract::There is a crucial need for development of prognostic and predictive biomarkers in human bladder carcinogenesis in order to personalize preventive and therapeutic strategies and improve outcomes. Epigenetic alterations, such as histone modifications, are implicated in the genetic dysregulation that is fundamental to c...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400143x

    authors: Telu KH,Abbaoui B,Thomas-Ahner JM,Zynger DL,Clinton SK,Freitas MA,Mortazavi A

    更新日期:2013-07-05 00:00:00

  • Binding Site Characterization of AM1336, a Novel Covalent Inverse Agonist at Human Cannabinoid 2 Receptor, Using Mass Spectrometric Analysis.

    abstract::Cannabinoid 2 receptor (CB2R), a Class-A G-protein coupled receptor (GPCR), is a promising drug target under a wide array of pathological conditions. Rational drug design has been hindered due to our poor understanding of the structural features involved in ligand binding. Binding of a high-affinity biarylpyrazole inv...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00023

    authors: Mallipeddi S,Kreimer S,Zvonok N,Vemuri K,Karger BL,Ivanov AR,Makriyannis A

    更新日期:2017-07-07 00:00:00

  • Quantitative analysis of brain nuclear phosphoproteins identifies developmentally regulated phosphorylation events.

    abstract::Protein phosphorylation is a globally adopted and tightly controlled post-translational modification, and represents one of the most important molecular switching mechanisms that govern the entire spectrum of biological processes. In the central nervous system, it has been demonstrated that phosphorylation of key prot...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8003198

    authors: Liao L,McClatchy DB,Park SK,Xu T,Lu B,Yates JR 3rd

    更新日期:2008-11-01 00:00:00

  • Proteomics of nitrogen remobilization in poplar bark.

    abstract::Seasonal nitrogen (N) cycling in temperate deciduous trees involves the accumulation of bark storage proteins (BSPs) in phloem parenchyma and xylem ray cells. BSPs are anabolized using recycled N during autumn leaf senescence and later become a source of N during spring shoot growth as they are catabolized. Little is ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501090p

    authors: Islam N,Li G,Garrett WM,Lin R,Sriram G,Cooper B,Coleman GD

    更新日期:2015-02-06 00:00:00

  • Plasma protein N-glycan profiles are associated with calendar age, familial longevity and health.

    abstract::The development of medical interventions for the preservation of disease-free longevity would be facilitated by markers that predict healthy aging. Altered protein N-glycosylation patterns have been found with increasing age and several disease states. Here we investigate whether glycans derived from the total glycopr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr1009959

    authors: Ruhaak LR,Uh HW,Beekman M,Hokke CH,Westendorp RG,Houwing-Duistermaat J,Wuhrer M,Deelder AM,Slagboom PE

    更新日期:2011-04-01 00:00:00

  • Streptozotocin-induced dynamic metabonomic changes in rat biofluids.

    abstract::Diabetes mellitus is a complex polygenic disease caused by gene-environment interactions with multiple complications, and metabonomic analysis is crucial for pathogenesis, early diagnosis, and timely interventions. Here, we comprehensively analyzed the dynamic metabolic changes in rat urine and plasma, which were indu...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300280t

    authors: Xu W,Wu J,An Y,Xiao C,Hao F,Liu H,Wang Y,Tang H

    更新日期:2012-06-01 00:00:00