Endoplasmic reticulum stress increases AT1R mRNA expression via TIA-1-dependent mechanism.

Abstract:

:As the formation of ribonucleoprotein complexes is a major mechanism of angiotensin II type 1 receptor (AT1R) regulation, we sought to identify novel AT1R mRNA binding proteins. By affinity purification and mass spectroscopy, we identified TIA-1. This interaction was confirmed by colocalization of AT1R mRNA and TIA-1 by FISH and immunofluorescence microscopy. In immunoprecipitates of endogenous TIA- 1, reverse transcription-PCR amplified AT1R mRNA. TIA-1 has two binding sites within AT1R 3'-UTR. The binding site proximal to the coding region is glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-dependent whereas the distal binding site is not. TIA-1 functions as a part of endoplasmic reticulum (ER) stress response leading to stress granule (SG) formation and translational silencing. We and others have shown that AT1R expression is increased by ER stress-inducing factors. In unstressed cells, TIA-1 binds to AT1R mRNA and decreases AT1R protein expression. Fluorescence microscopy shows that ER stress induced by thapsigargin leads to the transfer of TIA-1 to SGs. In FISH analysis AT1R mRNA remains in the cytoplasm and no longer colocalizes with TIA-1. Thus, release of TIA-1-mediated suppression by ER stress increases AT1R protein expression. In conclusion, AT1R mRNA is regulated by TIA-1 in a ER stress-dependent manner.

journal_name

Nucleic Acids Res

journal_title

Nucleic acids research

authors

Backlund M,Paukku K,Kontula KK,Lehtonen JY

doi

10.1093/nar/gkv1368

subject

Has Abstract

pub_date

2016-04-20 00:00:00

pages

3095-104

issue

7

eissn

0305-1048

issn

1362-4962

pii

gkv1368

journal_volume

44

pub_type

杂志文章
  • The nuclease domain of the SPP1 packaging motor coordinates DNA cleavage and encapsidation.

    abstract::The large terminase subunit is a central component of the genome packaging motor from tailed bacteriophages and herpes viruses. This two-domain enzyme has an N-terminal ATPase activity that fuels DNA translocation during packaging and a C-terminal nuclease activity required for initiation and termination of the packag...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gks974

    authors: Cornilleau C,Atmane N,Jacquet E,Smits C,Alonso JC,Tavares P,Oliveira L

    更新日期:2013-01-07 00:00:00

  • Cleavage of the sarcin-ricin loop of 23S rRNA differentially affects EF-G and EF-Tu binding.

    abstract::Ribotoxins are potent inhibitors of protein biosynthesis and inactivate ribosomes from a variety of organisms. The ribotoxin alpha-sarcin cleaves the large 23S ribosomal RNA (rRNA) at the universally conserved sarcin-ricin loop (SRL) leading to complete inactivation of the ribosome and cellular death. The SRL interact...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkq151

    authors: García-Ortega L,Alvarez-García E,Gavilanes JG,Martínez-del-Pozo A,Joseph S

    更新日期:2010-07-01 00:00:00

  • DnaB proteolysis in vivo regulates oligomerization and its localization at oriC in Bacillus subtilis.

    abstract::Initiation of bacterial DNA replication at oriC is mediated by primosomal proteins that act cooperatively to melt an AT-rich region where the replicative helicase is loaded prior to the assembly of the replication fork. In Bacillus subtilis, the dnaD, dnaB and dnaI genes are essential for initiation of DNA replication...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkp1236

    authors: Grainger WH,Machón C,Scott DJ,Soultanas P

    更新日期:2010-05-01 00:00:00

  • Quantifying deleterious effects of regulatory variants.

    abstract::The majority of genome-wide association study (GWAS) risk variants reside in non-coding DNA sequences. Understanding how these sequence modifications lead to transcriptional alterations and cell-to-cell variability can help unraveling genotype-phenotype relationships. Here, we describe a computational method, dubbed C...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkw1263

    authors: Li S,Alvarez RV,Sharan R,Landsman D,Ovcharenko I

    更新日期:2017-03-17 00:00:00

  • Methylation of nucleosomal and nuclease sensitive DNA.

    abstract::The proportion of cytosines methylated in the DNA of nucleosome oligomers and of core particles appears indistinguishable from that of total nuclear DNA from CHO cells. However the DNA in nucleoprotein which is initially released from nuclei by treatment with very low levels of micrococcal nuclease and the first 10% o...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/4.9.3097

    authors: Adams RL,McKay EL,Douglas JT,Burdon RH

    更新日期:1977-09-01 00:00:00

  • ORFDB: an information resource linking scientific content to a high-quality Open Reading Frame (ORF) collection.

    abstract::The ORFDB (http://orf.invitrogen.com/) represents an ongoing effort at Invitrogen Corporation to integrate relevant scientific data with an evolving collection of human and mouse Open Reading Frame (ORF) clones (Ultimate ORF Clones). The ORFDB serves as a central data warehouse enabling researchers to search the ORF c...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkh118

    authors: Liang F,Matrubutham U,Parvizi B,Yen J,Duan D,Mirchandani J,Hashima S,Nguyen U,Ubil E,Loewenheim J,Yu X,Sipes S,Williams W,Wang L,Bennett R,Carrino J

    更新日期:2004-01-01 00:00:00

  • Folate deficiency facilitates recruitment of upstream binding factor to hot spots of DNA double-strand breaks of rRNA genes and promotes its transcription.

    abstract::The biogenesis of ribosomes in vivo is an essential process for cellular functions. Transcription of ribosomal RNA (rRNA) genes is the rate-limiting step in ribosome biogenesis controlled by environmental conditions. Here, we investigated the role of folate antagonist on changes of DNA double-strand breaks (DSBs) land...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkw1208

    authors: Xie Q,Li C,Song X,Wu L,Jiang Q,Qiu Z,Cao H,Yu K,Wan C,Li J,Yang F,Huang Z,Niu B,Jiang Z,Zhang T

    更新日期:2017-03-17 00:00:00

  • Expression of C-terminal deleted p53 isoforms in neuroblastoma.

    abstract::The tumor suppressor gene, p53, is rarely mutated in neuroblastomas (NB) at the time of diagnosis, but its dysfunction could result from a nonfunctional conformation or cytoplasmic sequestration of the wild-type p53 protein. However, p53 mutation, when it occurs, is found in NB tumors with drug resistance acquired ove...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkl619

    authors: Goldschneider D,Horvilleur E,Plassa LF,Guillaud-Bataille M,Million K,Wittmer-Dupret E,Danglot G,de Thé H,Bénard J,May E,Douc-Rasy S

    更新日期:2006-01-01 00:00:00

  • Characterization of clinically used oral antiseptics as quadruplex-binding ligands.

    abstract::Approaches to characterize the nucleic acid-binding properties of drugs and druglike small molecules are crucial to understanding the behavior of these compounds in cellular systems. Here, we use a Small Molecule Microarray (SMM) profiling approach to identify the preferential interaction between chlorhexidine, a wide...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gky084

    authors: Calabrese DR,Zlotkowski K,Alden S,Hewitt WM,Connelly CM,Wilson RM,Gaikwad S,Chen L,Guha R,Thomas CJ,Mock BA,Schneekloth JS Jr

    更新日期:2018-04-06 00:00:00

  • An ARS element from Drosophila melanogaster telomeres contains the yeast ARS core and bent replication enhancer.

    abstract::We have sequenced the 0.7-kb-long fragment of Drosophila DNA which ensures the autonomous replication of plasmids in yeast. Deletion mapping has shown the ARS element to consist of at least two domains: the core having the consensus 11-bp sequence TAAATATAAAT and the enhancer which is no more than 90 bp long and is lo...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/16.3.1169

    authors: Gragerov AI,Danilevskaya ON,Didichenko SA,Kaverina EN

    更新日期:1988-02-11 00:00:00

  • Specific binding of o-phenanthroline at a DNA structural lesion.

    abstract::DNA intercalators are found to recognize a DNA lesion as a high affinity receptor site. This lesion-specific binding is observed when one strand of a DNA double helix contains an extra, unpaired nucleotide. Our assay for binding controls for the effects of sequence with a series of oligodeoxynucleotide duplexes which ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/16.24.11607

    authors: Williams LD,Thivierge J,Goldberg IH

    更新日期:1988-12-23 00:00:00

  • Cas9-chromatin binding information enables more accurate CRISPR off-target prediction.

    abstract::The CRISPR system has become a powerful biological tool with a wide range of applications. However, improving targeting specificity and accurately predicting potential off-targets remains a significant goal. Here, we introduce a web-based CR: ISPR/Cas9 O: ff-target P: rediction and I: dentification T: ool (CROP-IT) th...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkv575

    authors: Singh R,Kuscu C,Quinlan A,Qi Y,Adli M

    更新日期:2015-10-15 00:00:00

  • Discovering the 3' UTR-mediated regulation of alpha-synuclein.

    abstract::Recent evidence indicates a link between Parkinson's Disease (PD) and the expression of a-synuclein (SNCA) isoforms with different 3' untranslated regions (3'UTRs). Yet, the post-transcriptional mechanisms regulating SNCA expression are unknown. Using a large-scale in vitro /in silico screening we identified RNA-bindi...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkx1048

    authors: Marchese D,Botta-Orfila T,Cirillo D,Rodriguez JA,Livi CM,Fernández-Santiago R,Ezquerra M,Martí MJ,Bechara E,Tartaglia GG,Catalan MSA Registry (CMSAR).

    更新日期:2017-12-15 00:00:00

  • The evolution of the ribosome biogenesis pathway from a yeast perspective.

    abstract::Ribosome biogenesis is fundamental for cellular life, but surprisingly little is known about the underlying pathway. In eukaryotes a comprehensive collection of experimentally verified ribosome biogenesis factors (RBFs) exists only for Saccharomyces cerevisiae. Far less is known for other fungi, animals or plants, and...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkt1137

    authors: Ebersberger I,Simm S,Leisegang MS,Schmitzberger P,Mirus O,von Haeseler A,Bohnsack MT,Schleiff E

    更新日期:2014-02-01 00:00:00

  • Cloning and sequencing of a full length cDNA coding for human retinol-binding protein.

    abstract::We have isolated and sequenced a cDNA clone coding for human Retinol Binding Protein. The sequence indicates that Retinol Binding Protein is synthesized as a single polypeptide chain precursor which is then matured to the secreted protein by removal of a leader peptide. Southern and Northern blot analysis suggest that...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/11.22.7769

    authors: Colantuoni V,Romano V,Bensi G,Santoro C,Costanzo F,Raugei G,Cortese R

    更新日期:1983-11-25 00:00:00

  • Defining the sequence recognized with BmFTZ-F1, a sequence specific DNA binding factor in the silkworm, Bombyx mori, as revealed by direct sequencing of bound oligonucleotides and gel mobility shift competition analysis.

    abstract::BmFTZ-F1 is a Bombyx mori homologue of FTZ-F1, a positive regulator of the fushi tarazu gene of Drosophila melanogaster. In order to determine the sequence recognized with this factor, we made three sets of oligonucleotide mixture which contain 4 possible nucleotides at different positions within the previously propos...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/19.13.3689

    authors: Ueda H,Hirose S

    更新日期:1991-07-11 00:00:00

  • The nucleotide sequences of two tRNAAsn genes from tobacco chloroplasts.

    abstract::Recombinant plasmids which contain EcoRI fragments of tobacco chloroplast DNA carrying tRNA genes were constructed. Plasmids pTC211 and pTC293 contain the base sequences for tRNAAsn in their 1.4 and 1.1 Md EcoRI fragments, respectively. These two tRNA sequences are identical and are; 5'-TCCTCAGTAGCTCAGTGGTAGAGCGGTCGGC...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/9.21.5601

    authors: Kato A,Shimada H,Kusuda M,Sugiura M

    更新日期:1981-11-11 00:00:00

  • Evolution of the casein multigene family: conserved sequences in the 5' flanking and exon regions.

    abstract::The rat alpha- and bovine alpha s1-casein genes have been isolated and their 5' sequences determined. The rat alpha-, beta-, gamma- and bovine alpha s1-casein genes contain similar 5' exon arrangements in which the 5' noncoding, signal peptide and casein kinase phosphorylation sequences are each encoded by separate ex...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/14.4.1883

    authors: Yu-Lee LY,Richter-Mann L,Couch CH,Stewart AF,Mackinlay AG,Rosen JM

    更新日期:1986-02-25 00:00:00

  • Human N-ras: cDNA cloning and gene structure.

    abstract::The structure and organisation of the human N-ras gene has been determined by analysing cDNA clones derived from the two main mRNA transcripts. One clone in particular is 4.1 Kb long and originates from the larger (4.3 Kb) message. Sequence analysis of this clone has revealed that the N-ras gene consists of seven exon...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/13.14.5255

    authors: Hall A,Brown R

    更新日期:1985-07-25 00:00:00

  • Site-specific modification of the lactose operator with acetylaminofluorene.

    abstract::We have synthesized the tetradecamer GAGCXGATAACAAG containing a part of the sequence of the lactose operator. A guanine base in the sequence is replaced by the adduct of the carcinogen 2-acetylaminofluorene with guanine. Under the standard conditions of de-protection, the fluorene moiety is lost, leaving behind a gua...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/11.15.5093

    authors: Stöhrer G,Osband JA,Alvarado-Urbina G

    更新日期:1983-08-11 00:00:00

  • Size heterogeneity of EBV and mitochondrial DNAs in Burkitt's lymphoma lines.

    abstract::A simple, reproducible affinity chromatography method has been adapted for separation of high molecular weight supercoiled circular molecules from mammalian cells. Electron microscopic analysis of EB viral DNA obtained by this method, from the non-producer Burkitt's lymphoma line Raji, revealed monomer-sized viral mol...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/15.24.10345

    authors: Kinchington D,Griffin BE

    更新日期:1987-12-23 00:00:00

  • DEG: a database of essential genes.

    abstract::Essential genes are genes that are indispensable to support cellular life. These genes constitute a minimal gene set required for a living cell. We have constructed a Database of Essential Genes (DEG), which contains all the essential genes that are currently available. The functions encoded by essential genes are con...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkh024

    authors: Zhang R,Ou HY,Zhang CT

    更新日期:2004-01-01 00:00:00

  • Nucleotide sequence determination of bacteriophage T4 glycine transfer ribonucleic acid.

    abstract::The nucleotide sequence of a T4 tRNA with an anticodon for glycine has been determined using (32)P-labeled material from T4-infected cultures of Escherichiacoli. The sequence is: pGCGGAUAUCGUAUAAUGmGDAUUACCUCAGACUUCCAApsiCUGAUGAUGUGAGTpsiCGAUUCUCAUUAUCCGCUCCA-OH. The 74 nucleotide sequence can be arranged in the class...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/1.10.1287

    authors: Stahl S,Paddock GV,Abelson J

    更新日期:1974-10-01 00:00:00

  • Molecular modelling of the 3-D structure of RNA tetraloops with different nucleotide sequences.

    abstract::One surprisingly common element of RNA secondary structure consists of a hairpin capped by a four-base loop (or the tetraloop). Recently the 3-D structures of two RNA-tetraloops have been determined by NMR-studies. Both structures have a similar architecture: the first and the last bases of the loop form a hydrogen bo...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/21.19.4556

    authors: Kajava A,Rüterjans H

    更新日期:1993-09-25 00:00:00

  • The conserved regulatory RNA RsaE down-regulates the arginine degradation pathway in Staphylococcus aureus.

    abstract::RsaE is a regulatory RNA highly conserved amongst Firmicutes that lowers the amount of mRNAs associated with the TCA cycle and folate metabolism. A search for new RsaE targets in Staphylococcus aureus revealed that in addition to previously described substrates, RsaE down-regulates several genes associated with argini...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gky584

    authors: Rochat T,Bohn C,Morvan C,Le Lam TN,Razvi F,Pain A,Toffano-Nioche C,Ponien P,Jacq A,Jacquet E,Fey PD,Gautheret D,Bouloc P

    更新日期:2018-09-28 00:00:00

  • Molecular characterization of SMILE as a novel corepressor of nuclear receptors.

    abstract::SMILE (small heterodimer partner interacting leucine zipper protein) has been identified as a coregulator in ER signaling. In this study, we have examined the effects of SMILE on other NRs (nuclear receptors). SMILE inhibits GR, CAR and HNF4 alpha-mediated transactivation. Knockdown of SMILE gene expression increases ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkp333

    authors: Xie YB,Nedumaran B,Choi HS

    更新日期:2009-07-01 00:00:00

  • Mosaic tile model for tRNA-enzyme recognition.

    abstract::An improved algorithm was elaborated to analyse tRNA interaction with aminoacyl-tRNA synthetase based on analysis of tRNA sequences. The fundamental element defining the interaction between the tRNA and the synthetase is not a single nucleotide but a nucleotide combination named a tile which comprises of a given nucle...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/21.8.1941

    authors: Steinberg SV,Kisselev LL

    更新日期:1993-04-25 00:00:00

  • Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues.

    abstract::MicroRNAs (miRNAs) are small RNA molecules that regulate gene expression. They are characterized by specific maturation processes defined by canonical and non-canonical biogenic pathways. Analysis of ∼0.5 billion sequences from mouse data sets derived from different tissues, developmental stages and cell types, partly...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gks1474

    authors: Castellano L,Stebbing J

    更新日期:2013-03-01 00:00:00

  • A promotor directing alpha-amanitin-sensitive transcription of GARP, the major surface antigen of insect stage Trypanosoma congolense.

    abstract::The major surface antigen of procyclic and epimastigote forms of Trypanosoma congolense in the tsetse fly is GARP (glutamic acid/alanine-rich protein), which is thought to be the analogue of procyclin/PARP in Trypanosoma brucei. We have studied two T.congolense GARP loci (the 4.3 and 4.4 loci) whose transcription is a...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/24.2.272

    authors: Graham SV,Jefferies D,Barry JD

    更新日期:1996-01-15 00:00:00

  • Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.

    abstract::A truly universal nucleobase enables a host of novel applications such as simplified templates for PCR primers, randomized sequencing and DNA based devices. A universal base must pair indiscriminately to each of the canonical bases with little or preferably no destabilization of the overall duplex. In reality, many ca...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkw736

    authors: Spring-Connell AM,Evich MG,Debelak H,Seela F,Germann MW

    更新日期:2016-10-14 00:00:00