The potential of whole genome NGS for infectious disease diagnosis.

Abstract:

:Non-targeted identification of microbes is now possible directly in biological samples, based on whole-genome-NGS (WG-NGS) techniques that allow deep sequencing of nucleic acids, data mining and sorting out of sequences of pathogens without any a priori hypothesis. WG-NGS was first only used as a research tool due to its cost, complexity and lack of standardization. Recent improvements in sample preparation and bioinformatics pipelines and decrease in cost now allow actionable diagnostics in patients. The potency and limits of WG-NGS and possible future indications are discussed here. WG-NGS will likely soon become a standard procedure in microbiological diagnosis.

journal_name

Expert Rev Mol Diagn

authors

Lecuit M,Eloit M

doi

10.1586/14737159.2015.1111140

subject

Has Abstract

pub_date

2015-01-01 00:00:00

pages

1517-9

issue

12

eissn

1473-7159

issn

1744-8352

journal_volume

15

pub_type

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